AMCG00004423 (LOC106580930,LOC106612539)


Basic Information

Item Value
gene id AMCG00004423
gene name LOC106580930,LOC106612539
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49250236 ~ 49259701 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004423
GACCTGTGTGGAGCCACCACCTGCGACACACTGGGCATGGCGGACGTGGGGACAATGTGCGACTCCAAGAGAAGCTGCTCGGTCATCGAGGACGATGGCCTTCCTTCGGCCTTCACCACGGCACACGAGCTGGGACATGTCTTCAATATGCCCCATGATAACGTGAAGGCCTGCGAGGAGGTGTTCGGGAGGCTGAAGGACAATCACATGATGTCTCCCACGCTAATCCAGATTGACCGCTCTAACCCCTGGTCCGCCTGCAGTGCGGCCATTGTCACCGACTTCCTGGACAGTGGCCACGGGGACTGTCTCCTGGACCAGCCTCAGAAGTTGCTGGCTCTGCCCGAGACGCTCCCCGGCACCAACTACAACCTGAACCGGCAATGTGAGCTGGCGTTCGGCATTGGCTCCAAGCCCTGCCCTTACATGCAGTCCTGCACCAAGCTGTGGTGCACCGGCCAAGCCCGCGGCCAGCTGGTGTGCCAGACCCGCCACTTCCCCTGGGCCGACGGAACCAACTGCGGTGATGGCAAGTTCTGTCTGAGAGGAGTCTGCACCGAGAAGCACGACGTCACCAAGAATAAGGTAGACGGCCGATGGGGGAAGTGGGGCGTCTTTGGCTCCTGCTCTCGGACCTGCGGCGGGGGGGTCCAGCTGGCGAAGAGGGAATGCAACAACCCAGTACCAGCCAATGGGGGCAAATACTGTCAGGGGCTGCGTGTCAAATATCGCTCCTGCAACCTGGAGTCCTGCCCTGACACAGgtaaAAGCTTCCGAGAAGAGCAGTGTGAAGCCTTCAATGGCTTCAGTCTCAACACGAACAGGCTGACTCCTTCTGTGGTGTGGGTGCCAAAGTACTCCGGAGTCTCCCCCAAGGACAAGTGCAAGCTCATCTGCCGGGCAAACGGCACGGGATACTTTTACGTTCTTGCCCCTAAGGTGGTAGATGGAACGCCCTGCACCCCAGACTCCTCAGCGCTCTGTGTGCAAGGGAAGTGCATAAAGGCCGGGTGCGATGGGAAACTGAGCTCCAATAAAAAGTTTGACAAGTGCGGCGTGTGCGGCGGCGACAACAAGAGCTGCAAAAAGGTGTCGGGCTTATTCACGAAACCCATACAAGGCTACAACTTTGTGGTGATGCTGCCGATTGGAGCCTCCAACGTTGACGTCAGACAGCGGGGCTACAAGGGGATGGTGAACGACGACAACTACCTAGCGGTGAAGAACAGCCAGGGAAAGTACCTGCTGAATGGGAACTACGTAGTGTCCGCGGTGGAGAAGGACATCATCGTGCGGGGCAGCCTGCTGCGCTACAGCGGCACAGCCACGGCGGTGGAAATGCTGCAGGCCTTCAAGCCCTTGCAAGAGCCCCTGACCGTGGAGGTCCTGTCGGTGGGGAAAATGACCCCGCCACGCGTGCGCTACTCCTTCTACTTGCccaaggagaacaaggaggaGAAGATGGCCTACAAGAAGGAGGCAAAAGCCAACTCGCATAATAGCGTCCTGGTGGAGTCCAACAAGGTGGAGCTGAAGAAGCCTCCATACAAAAGGCAGATGTTCAAATGGGCTGTAGGCAGCTGGGACGACTGCTCTGTGACGTGCGGTAACGGCCTGCAGAAGAGGATGGTGGAGTGTCTTGATGGGGATGGGAAATCGGCCACTGACTGTGACTCAACCCAGCGGCCAAACGACATCCGGCTGTGCGGAGACCCATGTCCAGTGTGGGACATCGGAGACTGGTCACCCTGCTCCAAAACTTGTGGGAAAGGGTTCAAAAGACGGGTTTTACGCTGCATGACTCAGACTGGTCTGCTCCTGCCCAGAGATCACTGTACCAGCAAAAAGAAACCACAGGAACTTGACTTCTGCACACTACGGCCGTGCTAA

Function

NR:

description
PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 15-like

GO: NA

KEGG:

id description
K08629 ADAMTS15; a disintegrin and metalloproteinase with thrombospondin motifs 15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004423 True 1890 mRNA 0.58 7 49250236 49259701

Neighbor

gene id symbol gene type direction distance location
AMCG00004419 NA coding downstream 315820 48932465 ~ 48934416 (-)
AMCG00004417 NA coding downstream 319672 48910997 ~ 48930564 (-)
AMCG00004418 NA coding downstream 355235 48889077 ~ 48895001 (-)
AMCG00004413 NA coding downstream 665835 48583139 ~ 48584401 (-)
AMCG00004409 NA coding downstream 824527 48404180 ~ 48425709 (-)
AMCG00004432 NA coding upstream 178256 49437957 ~ 49439719 (-)
AMCG00004433 NA coding upstream 191127 49450828 ~ 49461400 (-)
AMCG00004435 NA coding upstream 322422 49582123 ~ 49588829 (-)
AMCG00004436 NA coding upstream 342453 49602154 ~ 49603347 (-)
AMCG00004438 NA coding upstream 376941 49636642 ~ 49663855 (-)
G8133 NA non-coding downstream 148324 49101708 ~ 49101912 (-)
G8118 NA non-coding downstream 202163 48977624 ~ 49048073 (-)
G8116 NA non-coding downstream 293773 48955376 ~ 48956463 (-)
G7979 NA non-coding downstream 1563669 47685925 ~ 47686567 (-)
G7978 NA non-coding downstream 1564362 47685631 ~ 47685874 (-)
G8281 NA non-coding upstream 551677 49811378 ~ 49814054 (-)
G8286 NA non-coding upstream 584881 49844582 ~ 49858455 (-)
G8307 NA non-coding upstream 684597 49944298 ~ 49945808 (-)
G8308 NA non-coding upstream 688182 49947883 ~ 49948531 (-)
G8309 NA non-coding upstream 691149 49950850 ~ 49951534 (-)
AMCG00004420 NA other downstream 264925 48940024 ~ 48985311 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 769521 48463181 ~ 48480715 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 1943647 47048124 ~ 47306589 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 2362482 46883292 ~ 46887754 (-)
G7882 LOC107575789 other downstream 2781802 46468125 ~ 46468434 (-)
AMCG00004429 NA other upstream 151506 49411207 ~ 49425182 (-)
G8310 NA other upstream 689160 49948861 ~ 49949592 (-)
G8340 NA other upstream 745431 50005132 ~ 50008694 (-)
AMCG00004457 rnf26 other upstream 806697 50066398 ~ 50071941 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other upstream 950282 50209983 ~ 50225826 (-)

Expression


Co-expression Network