AMCG00004435


Basic Information

Item Value
gene id AMCG00004435
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49582123 ~ 49588829 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004435
CGCGCTTCTCCCTGCACCGCAGCACAGCACTTCCCAAACTATCCCGGATTGTCCGTGGGAAAAAAtggctttttaatttgaaagcatcGTCGCCCGAGAGAACCGTGCTTTGCTTTTGCAACGCACCCTTACAAACTAACACAACTTCCAGCAAGAATGGAgTCTCACAATGCTCCCCCCACTCTGTCCATCGTGGCTCAACAGTTCAGCTCTGGTGCATCTTACCCGTTTGGCATTTTAAATCGAAATAGACGAAATGTTGGCGACATCAGCTCCTCACTGGAAAATGAATCCCCCCaccccctcgctctctctccctcacaggCTAGcatcagccaatcacagggaTGGAGGGGGGAGGAGTCAGCTGAGAACCAACACTTAATTGGCGATGGTCTCACCGACTGGATGACTGAAAAAGTGGATTTCTCCTCttacctccctccctctcactcctctccctcacccaacccctccctccctccctcacccccCCAGCATGATGTCCAGGTACCCTCTGACCTGGAGGTCATGACCTCTCTGCTGCAGGAAGAGCTGGCACAACTGGAGGATTACTTCCTGTCTGAATCGGAATCGGAGAAAGCAGAGAAATTGGAAAAATCTGACAAAGCATCTCTCCTAGCAAGCCCCCAGTCTTACTATCATTTGCCTTATACCCCTTACAACTCGGGCCAGTCAGAATCCAGCCCACTGCTCGTTACATTGGCAACTGGGGAGCTTGATCTGCTGAGCTTCTGCGGCGGTCCAGTTGGCCGTCCCAAAACGCCTAGACCAGTCCCATATAATTGCAGTCGTCCAGGCAGCCATAGTAGTCGAAAGAGATCTTCTGATAGTGGAAGGGTAGACGAGGGACTGGAGAATAGCATCTGGAGTTGCAAAAGAAATCTCTCAGGTAGTCCAGAAGTGGCAGTCAGCTACTGCTTTATAGGGGACAACAAGGTGGGTGGGGAGGAATATTGCCTGGGTAGTGCAGTAGAAGTTAGGGAAAGCACCATCTTGCTGAAAGAGGAGGAGAATTACTGTTTCACAGAAGATGTTACCGATGGAGATAAGGTGGTGGGTGGGTTTTGCCTTGGTGGTTCACTGGAGGCGACCCACAAGAAAGAGGGCCAGTTGTTGTATGGTTTGAAGGAGGTCAGTGGCAGCGAAGATGGAATGGAGGTGGAGGTGCAGCACCGCGGTAGAGCCGGCGAGCTGGTAGAGGTGGAAGACAAGCCATGTTTTCTCGAGGTCACAGCCACAGCGGAGGCCTATAGCAGCTTTCTGGAGAGGCCAGACGAGTCTTTGAGGGCAGGGGGTTTAGAGGCAGGAGAGCAGCACCATGGGTTCTGCTTCCCCGGCTTCCTGGGAGAGGAGTCCCGGGAGTGTGTGCCGGGGGGAGACGGGGATGGAGTGGAGGGGGGATCTCCCAGCCACAGAGCAGACAGAGAGGAGCAAGAGGAGCCCTGTCACATTAAGCCAGAGCCAGACACTGCCCCTGAAGCCCCAACCGGAGAACGCAAGCAGAAGAAGAGAGACCAGAACAAGACTGCAGCTCACAGATATCGCCAGCGCAAGAGAGCCGAGCTGGACTGCCTGGAGGAGGAGCTCCGGGGGCTGGAGGGGAAGAACCGAGAACTGCGAGACAAGGCCGagtctgtggagagagagatccAGTATGTCAAAGACCTGCTCATCGAGGTCTACAAGGCCCGCAGCCAGCGCCTCAAGCATGAACCCAGCGCCTGATGTCCATCAAACAACGTCCCACTCTTTATCCTCTTTTAAAACCAGCTATCAAAGAAAcaattaagtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatcttattagCATTGACAggtctcttcctctttctttgTAGTACTAGatgattattttctctttgtcaTTGCAAAGAAAATCTAGCAGCGTTTCAGTTGATGTCATCCACTAATATCTACTtctatatacataataaaagaCCAGCTGATCATGTCCACAAGCACTGTGATATTTGTCACCTTTGTcattctgaaatgtgtgtgacaCGGTCCTCGAATCCTTCACTCTGCCAGAGgagtaaatgtttttgtttgtcttgttgttCTATGACTAATGTTCTCAGCAGGGTGCCGCTGATTGGCTGCTCTCTGTCCAATGGGTTGCAGTTATGAAGCTCATAATCCTACAGgtgaaataacttgaaattaCTCATTTTCATGATTGGCTGACTGCTTTATGATTGGTCATTTCTTATTCCTCCATTTATGgactacaggaaaaaaaaaacatacaatttacgcaagtacaaaaatacacaaaacattcTGTTGAGTCATTGGGCAGCAACTTAACAAAAAcgttaacatttatatatatatatatatatatatatataaatgtgtgtgtgtgtgtttatgtgtatgtatgtgcactGTATACTTTGTATAATCTctcaaaaagtaaaaatagcATTTAAAGTTATTCACTGTTATTCAAACACACTTTACTGCTTAAGTAGACAATGCATGTTAAATTTAGAGAGCATGTCAGTAATGCAAAGATGAATGTGGAAAATGAGGAAAGTGTTCACAACTGTTTTCTGCATGGTACAAATGACTCCCGCCCATAgcaacacattttctgaataatgcAACTTGAGCTACTGTTACACAGCAGCTTTCGTTATGGCCAGCTTTAAGACTGTTCCATGTTTcttgatgcatttcattttaaggggggcttttttcttttcttttttacagtgACAGTTTGTTACTGGGGGGAAAAAGCTCCCATCCATTTGAtgcctctttttttttatctctcgTTTTTAATCTCTGCTTTACCACCTGCTGTACCTGCGAAAAACAATCACTCCTTCATAATTTTCACAACTGTGTTTGaatacacttctgtttttttttaagaactatggtcaggaaaaaatatatgaacaaaacatttctaggtctttttcaggtaatgtttttatatttctgtgtggTAGCTTGTGAAGTGCTGAAGTGTAGCTTTGCTTCTGAAGATGCAGCGTCCAGTGGTttattgaaaattgatttttattttaatttattgatctATGCAGCATGGCTATCAGCTGATTTAGACATTTTGTAGTGACACTTTTAATGTTGGGATGGAGCTTGAATGGTAGACTGCTAGTTTGGTGCTatgcaaataatatttttttcctgggAAATTGAAGAGACTATTAAAGGTCCTGTTTAGTTGTGACAAATACTGCAGGAAGTAAGATTCCATTACAGCAACAGAGTACAAACCAAAGCAGTTTACAGAACATTTGGCTTTGGAAACATCTATATTATGATAAATTGCAGCCCAAATAATGATTAGCCTCACCTTCCCTTTTGTTTCATCTGCTGCGTAACctatggcttttttttttccctgttattCTTACGAATGCTATAGAAGCCATTTAAAACATCCTCATGCAGAATTGTAATTTACCTGGTGCTCGATTTGTCGTGATGTGGTTTCGAGAACTTTTATCTTCATGTGACGTTCGCGCAGAAAGAGGGACGCTGCATCTTTTCAACTTCTGCTTTGAAACATCTCTGCGATGTACAATCAGCTAGTTCTACATTGATGTATCCTGTTTTGTTCCCGTCACATTGCTCTGCGCTTGTGGCAAGAGGTTTCTAATTCTCACAAATAGTCCAGCTTCACACGTGTTAGTTTTTTACAACAGGGTAAGAGAGGCGCCATCAGTCCACTTTTGTGCTGGAGCTGATTAAACTTTTCTGCGTCGTATCTCTGCTTTGTGTAAGCTGTGTCCTTTCTGTTATCTAAATAAAGTGACTTCTGTCTGCACTA

Function

GO: NA

KEGG:

id description
K09044 ATF5; activating transcription factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004435 True 3880 mRNA 0.44 6 49582123 49588829

Neighbor

gene id symbol gene type direction distance location
AMCG00004433 NA coding downstream 120723 49450828 ~ 49461400 (-)
AMCG00004432 NA coding downstream 142404 49437957 ~ 49439719 (-)
AMCG00004423 LOC106580930,LOC106612539 coding downstream 322422 49250236 ~ 49259701 (-)
AMCG00004419 NA coding downstream 647707 48932465 ~ 48934416 (-)
AMCG00004417 NA coding downstream 651559 48910997 ~ 48930564 (-)
AMCG00004436 NA coding upstream 13325 49602154 ~ 49603347 (-)
AMCG00004438 NA coding upstream 47813 49636642 ~ 49663855 (-)
AMCG00004439 LOC103368493 coding upstream 157999 49746828 ~ 49753116 (-)
AMCG00004440 NA coding upstream 179448 49768277 ~ 49772278 (-)
AMCG00004444 NA coding upstream 187095 49775924 ~ 49796184 (-)
G8133 NA non-coding downstream 480211 49101708 ~ 49101912 (-)
G8118 NA non-coding downstream 534050 48977624 ~ 49048073 (-)
G8116 NA non-coding downstream 625660 48955376 ~ 48956463 (-)
G7979 NA non-coding downstream 1895556 47685925 ~ 47686567 (-)
G7978 NA non-coding downstream 1896249 47685631 ~ 47685874 (-)
G8281 NA non-coding upstream 222549 49811378 ~ 49814054 (-)
G8286 NA non-coding upstream 255753 49844582 ~ 49858455 (-)
G8307 NA non-coding upstream 355469 49944298 ~ 49945808 (-)
G8308 NA non-coding upstream 359054 49947883 ~ 49948531 (-)
G8309 NA non-coding upstream 362021 49950850 ~ 49951534 (-)
AMCG00004429 NA other downstream 156941 49411207 ~ 49425182 (-)
AMCG00004420 NA other downstream 596812 48940024 ~ 48985311 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 1101408 48463181 ~ 48480715 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 2275534 47048124 ~ 47306589 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 2694369 46883292 ~ 46887754 (-)
G8310 NA other upstream 360032 49948861 ~ 49949592 (-)
G8340 NA other upstream 416303 50005132 ~ 50008694 (-)
AMCG00004457 rnf26 other upstream 477569 50066398 ~ 50071941 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other upstream 621154 50209983 ~ 50225826 (-)
G8501 NA other upstream 1082237 50671066 ~ 50673375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_01751833_01753354 ATF5B coding CI01000053 null 1751833 ~ 1753451 (+)