AMCG00004444


Basic Information

Item Value
gene id AMCG00004444
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49775924 ~ 49796184 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004444
GGGGGGGTTCTGTCGCTATTCCGAGAGTACTGTTCGCAGCATCGAGCCTGGGAATCGAAACTGTCTGTATTTCGTGCAAATGGGCAACAATATCACAATAATACTGAGAGAAGTTAACGACTTCACCTTGTAGCTGCCTCGCTGGTGGATcgaaaggaagaagaagagggaggAATCAGGCAAACGCATTTGGGATCATTATCGTGCATCTGCATCATTGCCACTGTCTTGTTGCGACAGCAGCCTCTCTTTGCTACTTAACTGTGGAAAGggattacaaaaaaagaagaaataaaatcagcTTGCACGGGAAAAACGTTTTGCTTTGTTGATAATAGTGTTTTAATTGCAGAGCTAGTTGTATTGCATTATAGGCACTAACGATACAGTCTCTAATTGTAGCACTGCTAACAGAAACAGCACGGGTGGAAATCATATTGATACAAATAGTGATACAAAGTAACTTAACACTGTCGGCAAACAAGCAGCTACGCAAATTGTCTGCATCGATGGCACATTACACAACTGAGGGACTGGGTCTGAGTATAATGGGAATATGGAAATGACTGGGATGTAACCAGTTAACAGGAGCGATGTGAGCGACGTGTATCCACCTGGACCAGAgcacctggagagagaggagcgATTTATTTCATTGCAAccatttcacaatgcatttatcGCTGTAACAATGCATTGAAGACTTTAAGCCCAGGGCTTTACATATAAATGACGACAGGGGCTCTCCGATTTTTTTCTGtgtacttattaatttattgcagAAGTGACCAGAGCATCTTTCAGGCAATCTGTCTGTAACTAGATGTGTTGGGAAGTtagcaaatataataataataataataatgtgtgtgtacatgcataTCCCTTTATCCATAAAGTCCATGTATTTGATTTAACTCGTCATTATCCGGAGTGTAGAGCTTTCCGTCCAGATGCCAAAgtcttttttaaaaaacaatattgcctTTTAGGCTATTATATTTAACAATCTTACATTGAATGACTGATGCATTACGTctatgtaatatattattatatttgttgtaaGTATTACAAGCACTAGTGTAGGATCACAGCAGCGCAGTCGGATAAAAGGTTGGGTTTTTTTATGCTGATTTTGCTCTTTGAATGAAGATTCTTTATCAGTGTATTCTGCAATATTGTCAGGGTATCATTTGACATTAAGGATGGCAATGGTGACATTTCAAGATATCAGCTGGTGGATTTTGGTGTCCCTCTTCTTAGCCTCCTTGTTGACAGTACTGGCCTGGCTGGTGCAGTATTCCAGAGGACTACTGGGTGGCAGGAGTCAAAGTGTGGGAACCCAGGACAGGTCGGCAAGTGGTGGCATCTCTGTGGCACTGCCAAGCCCATCGCAGTACCAGCTCCGAGCCAGGGGTGTGTGGGGATCCCTGCTAAAGCTAGGCTTTGGGAGAGATGGAGGAGCCGGCAGTGGAGGAGCGAGTGATGCTGGGGTGAAGGGCTTGCTGTCTTCACTGTTCGCATTCAAGTCCTTCCGGGAGAACTGGCAAAGGACCTGGGTTCAAGCGCTCAATGAGCAAGCGTGTCGGAATGGGAGCTCCATACAGATTAACTTTGAGGACAGTCTGCAACTTCCCACCTCTGCCTCCATCAGTCATGTGACCTGCACAGATCAATCAGAACACAGTATGGTGTTAGAGTGCCACTGCGTTGTCGACTCAGTGACTTTCCCAGTGACGGTCACCCAGCAGTCCCCCGCTGCTGTTTCCATGGATACATACCAGGTCAACATGGCGCCCATGCATGCTCAGTTGGTGGTCTGCCTAGAAGAGATTGAGGAAGAAGGCCTTCTGGTCTCCTGGTCTTTCTCTGAGCACCCCCTGCTCTCCCTCACCATCACACCACGAAAGGTGCAACGGGAGGAGAGTGATGGGAAGGTGGACACCGGCACCATTGCTGAGCTGGTGAAAGACACCATCGTCAGCACACAGCCAGCCATGATCGTCAACCTCAAGGCCTGCGTCTCCAGCCCTGTGGCCCCTGGAGAGCGTCTGGTCAGGGGTGTCCACACCCCCTCCACGGAAACCCCTCTGTGCCGGCTCCTAGTCCGACAGCTCAGGGCCAGCAGTATCAGTGGAGCAGGAAGAGGAGgctGGGGAGAGCTGTGCTGTGCCCTGGAGCTGGACCACCCTGCCCAGCAGAGGAGGACACGCTTCCTGTCCCCTCCTTCAAGTCCAGGATCCAAGCTGGAGTGGAGCGAGGATGTCACACTGGATCTGGGCCCTAGCAGCAAGGAGCTGAGACTCAGACTGCTGGCGTACCTGGATCCCACTGAGCCCCGCAGCTGGCAGTGTGCCGCTCCGCTGCGCCCCTCCCTCACCCCCACCAAGAAGGTGGAGATGGACCGCACCATCATGCCCGACGGGACTATTGTCACCACAGTTACCACCATCCAATCACGGCCCAAGCTGGACTGCAAGCTGGACTCACCCTCCTGCTCCCCTTCCAAGGTGGAGGTGACCGAGAAGAAGCCCACAGTCCTTGCAGACAGCATCCGGGACACCGGGGTCTCTCCTACTACCAGCTCTCTTGTTCATGCTGGGGATGATGGCCACCTCTCCAACGGGCTGGACCCCGTGGCCGAGACCGCAATCCGACAGCTGACAGAGTCGGCCAGCAAGGCTGTGAAGAAAACGCCCACCAAGAGGAGCACACTCATCATATCAGGAGTGTCCAAGGTTCCGATTGCGGAGGACGATGCGGCTCTGTCGATCGGCTACGCGGCATCGATGGATGCAGCCCTCCACGGGGAGGCCTGCCACGGAGCCTCCAACCACTCTGCCACCAGCTCCCAGGCCACAATGCAGCCGGATCCCGACGAGACCACGCGCTCAGACATCTCGGAGAGGCCCTCCGTAGATGATGTAGAGTCAGAGACTGGCTCAACTGGGGCGCTGGAGACGCGCAGCCTCAAAGACCACAAAGTGGGGTTCCTGCGAAGTGGTACCAAACTCCTCTTCCGCCGGCGACATCGTCAGAAGAACCCGAGCCTCAGCCAATCACACGAGGACGTCTCCAACCTGGGCAACGGCTCGGCTGTGCGCAAGAAGTCGGGCAGCTTCTCGCGGCGCCTCATCAAACGCTTCTCCTTCCGCTCCAAATCCAAGAACAAGGCCAGTGCCAACGGAGGGGCGGCCGGCGGGGAGAACTGAGCGGGGCATCAGCAGGAGGGCGAGGGCGTGCTACTCGGCTAAGTGCAAGGACCCTGTACCCAGGATTGACCCCTGTGGAACACCTATCGTGTACAAACCCACGCACATCCCAAACTGTGCAGGATCCTCTGAAGACATTAATCTGGAAACAAGGAAGAAGGAAATCTTCACTGCCAGTCTGAATCTCCTGGGATTCTCTGGCTCCCTGCAGCAGGAGCGATGGATCTGAAGGACAGTGTAGGTGGTGCAGCACTGAATTCCTGCGCAGCGAGGCTCTCCCTAACCAAAATTGCTGAATATTTCCAAAGCCAGACCCTGTTCTTTTTTAGCACTGCGAAGTGTGGCCAATGCCATATCATAGAATGGATACTACAAGGGATTTTGAAAGTAGGCAGATATTTTTTGCACTAATGAAAATGATGGggggaagaacaaaacaaaacatctgtctattttttaaactctCTTTAAGCATTATGTCTTAATCTCCCtgtatatttttgcattatCATGGTACACATTTCGAGTTCATCTCTTTACTTGATTGAAACAACTATTTTTAACCTGGAATTGCAGCTATATTCTACCCTGGCTGAGCTGTAATAATGTAGTCATGTAGACGCAAAGCTGCTGTGCACAAGATCTGCAGTATGACTATGGAATGCACTTACAGTATTTCCTGGGGGTTAATGGACTCCTAATGCCTGCGGCCCACAGTTGTTCGAGTGAAACCCATCTGTGTGTCACAGCAGGAGGAATGCAGCACTGAGATGTACAGTGACCTGGGTGAGCTTTGCACTACTGACCCCACTGCTTGTACAAGGATCGGGCCTGCCATGGATACAGGATCGTCTATTGTTGCTGTGTAGCTTCAAAAAGAGGAAAGCCAAATCTGAAGAAAATCACCACTTGGGGTTAGGGAGATTTGTCTtttctcttcatatttttttcacactATTATTCCTGTTCAGATATCCATGGTGTCTTCAAAGAAATAATGGAAAACAGAGTCCATTTCACAGAGGGGGGCCAGCGAGAGCAATATGCCATCCTGAcgatctctctctgtgtgaggaGATTCTGATCTGAATCTCGGCACATTTACACTTGAGCTGGCCAGATGGGCTTATATCGACACGCATACGAGGTTTAGTGGAGCCGAGAACAAAATCCTGGATGGATGCTCCCTGGGTGAGGGGCACATGACACCGTGCTGCACTTCAGGAAAATAGGCTGATCTGGAACTGGTAATGGCCCGGAGAGACTTTGTGACTGTTTAGCTTCCTGCATATCTATTGGGCCGAATAATAGGTGCTGATTGTCCTGCTGGTGTGGAATGCATTCTCTCTGGGGACAACTGTGTGCAAAGGGTAATTGGGGGGGATGTGTTTGAGCTACATATTGAGTATAGGGAATTTACAGGCAGCTAATGGTGTGACTATGGTGATGGTGGCTAAACTTTGGTTACTGGTGGTCCGGTTGAgggtgtttatttgttttcattttctcttgtttgtttgttcatttgttgttgtttttttctttgttgataAAACAATGCTGGGCATTTTATAGCACATTTGATTAACACTAAATTTCCCCCAAAGGTCAGTCAATGAATAGTGAATCTTGTTGTGCAATAGAAATGTGTTGAACTCCATCTGTTTCATTCCCCTGTAGATTTCAGATGGAAACACCACCTTTACTTTTTGATTCTGTTTGTTGGTGTATACAATGTGTCTCTGTTGCAAATCactgagagtttttttttttctctcagaaaaagggaaaaacatattttgaggTGACCATACAGTTTGCTGCAGTAATGTAATGATTGTAAGGAAACAATCAAATTGAGCAAACTGTAGCTTTAAGGGCATTAACATAACACTATCTCATATCGTTCCTTATATTGGTGAAATCACTGGAACCATAGGCAGTGAACTTGGACTGCTGTTCAGTGCTACATATCCCAGACAGGCTAGTAAATCTGAAAAGGAACAACAGGGAAATCTTTCCTGGAAAAAAACTTAAACCAAATTACCAAACAGGAGCAGGGCTGTGCTACAAGATTTATACAGGTTCTAATTATGATGGGTTTTTTACCTTTAAGTTGCAATTCCTGCACTTTTCTTGCACACTGTAGGGTATAAATGaatcaatgtttatttgtacctttaaaaaaa

Function

GO:

id name namespace
GO:0010605 negative regulation of macromolecule metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0010629 negative regulation of gene expression biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:1901361 organic cyclic compound catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0044270 cellular nitrogen compound catabolic process biological_process
GO:0046700 heterocycle catabolic process biological_process
GO:0019439 aromatic compound catabolic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004444 True 5404 mRNA 0.48 14 49775924 49796184

Neighbor

gene id symbol gene type direction distance location
AMCG00004440 NA coding downstream 3646 49768277 ~ 49772278 (-)
AMCG00004439 LOC103368493 coding downstream 22808 49746828 ~ 49753116 (-)
AMCG00004438 NA coding downstream 112069 49636642 ~ 49663855 (-)
AMCG00004436 NA coding downstream 172577 49602154 ~ 49603347 (-)
AMCG00004435 NA coding downstream 187095 49582123 ~ 49588829 (-)
AMCG00004446 NA coding upstream 24371 49820555 ~ 49822910 (-)
AMCG00004445 NA coding upstream 35015 49831199 ~ 49833740 (-)
AMCG00004447 NA coding upstream 43351 49839535 ~ 49841520 (-)
AMCG00004456 c1qtnf5 coding upstream 246075 50042259 ~ 50048074 (-)
AMCG00004460 cbl coding upstream 348526 50144710 ~ 50157745 (-)
G8133 NA non-coding downstream 674012 49101708 ~ 49101912 (-)
G8118 NA non-coding downstream 727851 48977624 ~ 49048073 (-)
G8116 NA non-coding downstream 819461 48955376 ~ 48956463 (-)
G7979 NA non-coding downstream 2089357 47685925 ~ 47686567 (-)
G7978 NA non-coding downstream 2090050 47685631 ~ 47685874 (-)
G8281 NA non-coding upstream 15194 49811378 ~ 49814054 (-)
G8286 NA non-coding upstream 48398 49844582 ~ 49858455 (-)
G8307 NA non-coding upstream 148114 49944298 ~ 49945808 (-)
G8308 NA non-coding upstream 151699 49947883 ~ 49948531 (-)
G8309 NA non-coding upstream 154666 49950850 ~ 49951534 (-)
AMCG00004429 NA other downstream 350742 49411207 ~ 49425182 (-)
AMCG00004420 NA other downstream 790613 48940024 ~ 48985311 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 1295209 48463181 ~ 48480715 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 2469335 47048124 ~ 47306589 (-)
AMCG00004398 anc13,anapc13,LOC107756075,LOC107693524 other downstream 2888170 46883292 ~ 46887754 (-)
G8310 NA other upstream 152677 49948861 ~ 49949592 (-)
G8340 NA other upstream 208948 50005132 ~ 50008694 (-)
AMCG00004457 rnf26 other upstream 270214 50066398 ~ 50071941 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other upstream 413799 50209983 ~ 50225826 (-)
G8501 NA other upstream 874882 50671066 ~ 50673375 (-)

Expression


Co-expression Network