AMCG00004457 (rnf26)


Basic Information

Item Value
gene id AMCG00004457
gene name rnf26
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50066398 ~ 50071941 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004457
ATGGGGCTggtgtactttttgttttgctgcatcGGACGCACCATAGACTTCCTGTGTTTCCTGCTGGATTTGAACTTCTGTGTCGTCAACTCGCTGATCCGGCTGCTGTTGGGCCTGGCATCTTTCATCTACCACCTGCCCATGCTCCTGACCAACTCGGTGGTGCAGTGCTGGAATCTGGCTCTGTTCTGCATGTTGACCACCGTGGAGGGGTTGGTGGGGGCGGCGCAGGGCTCCCTGAACGTGCTGAGCGGCTGGCTGAGGGTGTTCTGTGGCATGTCGGAGAGCTTCAAGATGGTGGGCCACCTCTCCTCGCACGTGCTGCTGCGcaccaaggagctgctgcaccGCGGCCTGCTGTCGGGCCACTCGCTGCTGCGGCAGGTGTGCGAGGGCTGCGGCATCGCGCTCAGCCTGGTCCTCTACTTCGTCAACACCATGGTCAACATGCTGCTCATCGGCACGCAGAACTGCTTCTCCGTGGCCGCTGCCACCTGGGATTCAGTGTCCGGGCCCTTGCAGAAGGCAGTGGAGTTCGCCCTCACGCTCTTCAGCTACCTCTCCAGCAGCCTGGTGGGTACGGCCATCATCCTGTGGACTCCCTGCCAGCTGGCCCTGGAGTTCCTGTGCTCCCTCAGCCACATCTTCATCAGCGTCTTCCTGCTCAACCTCTATGGGCTGGTGCTCACGCTGGGCATCGTCTCGGCCACCACACTCTACCTGAACCCAGGGCTGCCGCGACGGGGGGCCGACCGCACCCTGCGCTACATCAGCACAGTGCCCTCCCTTTCCCGCCTGCACAGAGTCCTGTATCGCCTCTACCTGGTGGCTCTGGCCCAGGCACAGGCCGTGCTGGAGTTGGAGATCTGGCAGCGAGTTGTGTGGCAGGGCAGTCAGACTGGGCAAGGAGGAGGCCAGGgggcggcggcagcagcagcagcagcgtttGAGGGAAACGTGGATGTTGGTGCCCAAGAAGCCAGGCATCCGGCGGGGTTTGCTGAAGAATACCTGGTGGGTGAAATGGCCACCCTAATTCAGCCTCCCCACGGTGCTCCTGAGAACGGAGAGCCCGCCCCACCCCTAGGCGCCCAGCTGGGCGACAACATCCCAGCTGCCCCCGCCCTCCCCAGTTCCAGCACAGACAGACCCTTGCAGAGGCACCCCTCGGGCGATGGGTACAAAGAGCCTCTGCCCGACAGCCTGCTTACGCTGCTGAAGGAGCACGAGGAAAGGAAGAAATGTGTCATCTGCCAGGACAGTATCAAGACCGTTCTGCTGCTGCCCTGCCGGCACCTGTGCCTGTGCCGTGAATGCACCAACATCCTGCTGCGCCAGCCCATCTACCAGCACAACTGCCCTCTCTGCCGGCAGATGATCCTACAGACCATGGACGTGTATCTCTGA
>TU10312
ACAGACAGACCCTTGCAGAGGCACCCCTCGGGCGATGGGTACAAAGAGCCTCTGCCCGACAGCCTGCTTACGCTGCTGAAGGAGCACGAGGAAAGGAAGAAATGTGTCATCTGCCAGGACAGTATCAAGACCGTTCTGCTGCTGCCCTGCCGGCACCTGTGCCTGTGCCGTGAATGCACCAACATCCTGCTGCGCCAGCCCATCTACCAGCACAACTGCCCTCTCTGCCGGCAGATGATCCTACAGACCATGGACGTGTATCTCTGAGCAGAGATATTAAGCCCTTTGATTTATTGTCATGTTGTAATAAAAAAGACAGTATTGTATTGGTGAGAAGGAGAATCTCGGTTTAACTTGACTAGAGCTGTTCAATCCCTGGTGACCGCTGGCTCCCGAGTCCAAGTGGCATGTGTGGCTTTTCCAATCCATTCCATTGCTGGCTCCTACTCAAACCGGCTCCTAAGGCAGCTGTTTGGTAGATTGCCATAGTCTTCCGGCTATGCTTAATAAGTAAGACTGTGCCATAACATTGTTTCAGCCAGtatcataaacaaataatatcaagaaacattttatttatttattttgattcccACTATGGaaatatttctaattaaaacaatctgtcaTGCTCTTTAAAAACTGACTTTAATTGTCATACTTATGCGTTGATATATTTTCTCTAGTTGATGACAGTCGGCTCTCAAGGGCAGTATCTTAATGCAGCCCTGGCTTTGCTTTCACGGGGGATGGAAGTGCACAGGTCAGGTTTAAGCTGCGTATTTCGCTCTTGATTGCTGTTCTGTGCCGCTGTAGATAAGCAGCAGGGCACCAACTGAAGAGCCCACAGATCTCTGCCCAGATTGTGTCGCTGGGCTCCTTATCCCTGATGAtgggaaaatacttttttgatcACAGATCAGTTTATTGCCAGTTAAGAAACCTTCCATTCCTACTGGTTGTCACTGCCATCTTTTGAATGcaaataattttagttttttggtgttgattttccttttttatttttgtagtctGGCTGTAACAATGTCTTGAGCTCTTGATAGTGGTTGACAGTAACGCATGGGGAATTGAACAGCTCTCTTGCCCAGTCACTAAATGGTTGATCAGCAGTGGCTTGTAATGCAGTGTTGAGATTTCCACCGCTCTTTGTTACTGTATAATAAGCATGATACCCCCCCTGTATCAAAGCTTTTTAACAAGTTTCTGAGGTTCCCCTTGGGACTTGGAGTCACCCCATCCTGATGGGAAATGGCTGCTGATTGGGGAGTTGGGTAACCTGAGCGAATGCACTACAGTGTATTAGGAATCTATTTTGTGGTCCACTGAAATAACCCCCGAGGGAGATTGTCAGTATACTAGTATACTCTGGTTGCATTTAAATTGTGGCCATCATAAATGATTGCACCttgcacaaaaataatatttaaaaaatcctttTAGCACCAGCACATCTGTCATGATACGCTGTGGATTGTGAGTGCACCATAGCTAAGTGATCTATATGTTCACAGTGAATAACGCAGGCACTGGCAGCCTAATCCTCCCAGCCTGTTCATGCTTCCAGGACATATTTAAGCTGAGACTTCTTGCTGGGTAACTCtcatcagcttttttttttttttttttttttttttttttttttttttctttgaaactgATTTACTAGTGTATTCAGGTAGACTAGTCTTAACATAAGGAGTTAGACTCAAGTCATACTAAAGAGTATAAGAGGTTAGATGACTCTTGCTGTGCCTAATGTGTTAGCCTCCTTTCTTCCAGGTTAACCTGCTGACTTTTGTGTATTCAGCACATCCTTCGCAGCTTTAGCCTCACTGGTCTATGCAAACTGCACCCTGGTCAGGTGACTGCCCCCCCGTAGCGAAATATGATGGACACTGGATGTAGACTGCTGGATTTAGTTTGTCCTTTTTCTCTGCTGTGGATTTGTCCCCTAAAAAGAATTGTGGTTGAATCTGGCAACACACCCTCCATAACTAATGTTAGAGATATTAGGAAaagctattatttaaaatgctttttgtataacttaattacattttctgattcttccttccttttagtttggattctgttttgtttttctcaatccTTTCCTCCATCGCACCTCGATTACTGCCTCGTTCTGAAGTGCAAAAGAGAAATGGAGAGCCGCACCAGCCATCGATCTGTTGTCCAAAATGAACGTTTACTTTGTGTTAGAAAGCTGCGATCTTTACCCCTTTATTTGTGTCATCACTAAAAAGGTATTGATCAGCACGCTGAGAAATATAATGTTACAGGTTTACAGCAGAAAATGGCTAGGGGATTTTCGCTAgcaattgcattatgctttttttattgcctTCCTCATTGCCTCAtgagtgaaagagagagcaagaaaaaactaaaccaaacaaatacaaattccGATAAGAGTTCATATTTGGCCTGGTGATATGAAGGAATGTTCCAGATAATAATTGTTTTGACATCAGGTCTGTTTCAATATCACTGTGCTTGAATCCTGGGCAGACTATGTGGCTTTTTACAGCTGCTGTGTAGGACTTAGTTTCTCAAAACATTGACCGGCAGCGTTTcccatttgtttatattaaccggttttaatttatttccaaaactCTTACCAACTaacttaccttttttttttttttagtttttctctctgcATTTGTGGTGTGCTGAAATCATTGAGGCCCTAAATTCATACCAAGTGGTCTTCTTAATGATATGTTAATgcttaaaactaaaacaaattagAGATCCTCTTGAGTCATGGGATACTGGATGACTGACCTTAAACAGTTACCAAGCAGTCAAATTCTGTGGTCTTCATAGGTGGTTAACATCACACATTAAATCTTAGTCTCAACCACATCTCTCTGCCTACTTAAAGGCGCAATGCCACAACACCTGTCAACACAGTGCTCATCTTTACAAAAACAGCCGACATCTTGGCTTGTGCGCTTGTGAAAATGATCATTATCTAAACGGTCTTCCAAATGTAAGGGCTTAAACTGTTTTCTGCCTCTACACAGCCTAATATCACTCTGTCCTTGTTTGACTTCTTCAATCACATTAGTTTCTGCTGGTGTTGCTGCTCgtttcatttgcttttttctgtgTCCAAAACATTCCAGGCTAAAATGGTCACTCAAAGAAATCAATCGCATAGacgaaaaaaaaatacagcaaaagcTAAAGTGCTAAATCAAAGGGCCACTTTGTTATTTGGCGATTTTTCTCGTTGGCAaagcagtctttttttattggCTTTAATGTGGGAAGTCACCGTAGCAAAATTATTTAAGATCATGGAAGCTTAGCCAGTTTTCGAAAGTGCTTAATCAGTCTTGTAAGCTTTCAAGCTTTATTCTGTCCTCTCAAAAGAGCAGTTGTAATGAAATGACTTGTTTtctaacttaaaaataatgctgTTATCGCATTACATCACAACAGTAAGcctaaagcattttctttttttcctctgggCTTTGTGGGTTTGCAGCCGTTTTGTGACTGATGGACTAACAGTAATTGTGCACAGTCCTTCAAGTTAGAAACTAAAATTTACTGGGACAGCTGGTTAAAGTGGCAAACTAGTGCTGCATCTGTACAGAAACCGGTCTTAAATATACAGACCAGGTGTGCTGATAGGAGTctgtaaaatgcaaacaagtgGAGATGGAGGCCTGTTCCTGTAGGAGCAGACACCGAAGGGAGAGAGGCGCACTGTACACCGAAAGCTGCCCGTATTTAGCTCACATTGCTCAAGTCAAGCAAAAATGATAACGGGACTGACGCTATGGCATGTGCTCCTGTCCTTCCACTGAATTAATGATTGTGCTGTTGAGCACTGTTTAAAGTGTTGCAGGCCTTGATCATTTGCCACGAGATAACACTAAAGTCTTCCACAGTCCacgtgttttttttgtatactcATTCATCATTCCTAGTGTGCAGTAGTAAGCAGAGAGGAATGCAGTGGTTTGCTATTGCGGCGTCATTTGTGTAGGTAAGTCGGCATTAAAAGCCTTGTGTAACGCAGATGGAGACAAACTATGTCTCTTGAGTTTTGAATCTGCTGGATATGTCGCTTTATGCTATGGGGTGTTGCAATAATATGTggagtttttcctttttctcttatTGGGGGGGATGTTTGGCCTCATTTGGAACAAGCTGTGTGTAACTGTGGCTCCAAGAAATTCTTTTCAAAACACTCAATAAATGTTCTCCTTTTTAAGAAGTGAGGTGTtcctatattttttttacatgt
>TU10314
ttttttttttttttttttttttttttttttttttttttctttgaaactgATTTACTAGTGTATTCAGGTAGACTAGTCTTAACATAAGGAGTTAGACTCAAGTCATACTAAAGAGTATAAGAGGTTAGATGACTCTTGCTGTGCCTAATGTGTTAGCCTCCTTTCTTCCAGGTTAACCTGCTGACTTTTGTGTATTCAGCACATCCTTCGCAGCTTTAGCCTCACTGGTCTATGCAAACTGCACCCTGGTCAGGTGACTGCCCCCCCGTAGCGAAATATGATGGACACTGGATGTAGACTGCTGGATTTAGTTTGTCCTTTTTCTCTGCTGTGGATTTGTCCCCTAAAAAGAATTGTGGTTGAATCTGGCAACACACCCTCCATAACTAATGTTAGAGATATTAGGAAaagctattatttaaaatgctttttgtataacttaattacattttctgattcttccttccttttagtttggattctgttttgtttttctcaatccTTTCCTCCATCGCACCTCGATTACTGCCTCGTTCTGAAGTGCAAAAGAGAAATGGAGAGCCGCACCAGCCATCGATCTGTTGTCCAAAATGAACGTTTACTTTGTGTTAGAAAGCTGCGATCTTTACCCCTTTATTTGTGTCATCACTAAAAAGGTATTGATCAGCACGCTGAGAAATATAATGTTACAGGTTTACAGCAGAAAATGGCTAGGGGATTTTCGCTAgcaattgcattatgctttttttattgcctTCCTCATTGCCTCAtgagtgaaagagagagcaagaaaaaactaaaccaaacaaatacaaattccGATAAGAGTTCATATTTGGCCTGGTGATATGAAGGAATGTTCCAGATAATAATTGTTTTGACATCAGGTCTGTTTCAATATCACTGTGCTTGAATCCTGGGCAGACTATGTGGCTTTTTACAGCTGCTGTGTAGGACTTAGTTTCTCAAAACATTGACCGGCAGCGTTTcccatttgtttatattaaccggttttaatttatttccaaaactCTTACCAACTaacttaccttttttttttttttagtttttctctctgcATTTGTGGTGTGCTGAAATCATTGAGGCCCTAAATTCATACCAAGTGGTCTTCTTAATGATATGTTAATgcttaaaactaaaacaaattagAGATCCTCTTGAGTCATGGGATACTGGATGACTGACCTTAAACAGTTACCAAGCAGTCAAATTCTGTGGTCTTCATAGGTGGTTAACATCACACATTAAATCTTAGTCTCAACCACATCTCTCTGCCTACTTAAAGGCGCAATGCCACAACACCTGTCAACACAGTGCTCATCTTTACAAAAACAGCCGACATCTTGGCTTGTGCGCTTGTGAAAATGATCATTATCTAAACGGTCTTCCAAATGTAAGGGCTTAAACTGTTTTCTGCCTCTACACAGCCTAATATCACTCTGTCCTTGTTTGACTTCTTCAATCACATTAGTTTCTGCTGGTGTTGCTGCTCgtttcatttgcttttttctgtgTCCAAAACATTCCAGGCTAAAATGGTCACTCAAAGAAATCAATCGCATAGacgaaaaaaaaatacagcaaaagcTAAAGTGCTAAATCAAAGGGCCACTTTGTTATTTGGCGATTTTTCTCGTTGGCAaagcagtctttttttattggCTTTAATGTGGGAAGTCACCGTAGCAAAATTATTTAAGATCATGGAAGCTTAGCCAGTTTTCGAAAGTGCTTAATCAGTCTTGTAAGCTTTCAAGCTTTATTCTGTCCTCTCAAAAGAGCAGTTGTAATGAAATGACTTGTTTtctaacttaaaaataatgctgTTATCGCATTACATCACAACAGTAAGcctaaagcattttctttttttcctctgggCTTTGTGGGTTTGCAGCCGTTTTGTGACTGATGGACTAACAGTAATTGTGCACAGTCCTTCAAGTTAGAAACTAAAATTTACTGGGACAGCTGGTTAAAGTGGCAAACTAGTGCTGCATCTGTACAGAAACCGGTCTTAAATATACAGACCAGGTGTGCTGATAGGAGTctgtaaaatgcaaacaagtgGAGATGGAGGCCTGTTCCTGTAGGAGCAGACACCGAAGGGAGAGAGGCGCACTGTACACCGAAAGCTGCCCGTATTTAGCTCACATTGCTCAAGTCAAGCAAAAATGATAACGGGACTGACGCTATGGCATGTGCTCCTGTCCTTCCACTGAATTAATGATTGTGCTGTTGAGCACTGTTTAAAGTGTTGCAGGCCTTGATCATTTGCCACGAGATAACACTAAAGTCTTCCACAGTCCacgtgttttttttgtatactcATTCATCATTCCTAGTGTGCAGTAGTAAGCAGAGAGGAATGCAGTGGTTTGCTATTGCGGCGTCATTTGTGTAGGTAAGTCGGCATTAAAAGCCTTGTGTAACGCAGATGGAGACAAACTATGTCTCTTGAGTTTTGAATCTGCTGGATATGTCGCTTTATGCTATGGGGTGTTGCAATAATATGTggagtttttcctttttctcttatTGGGGGGGATGTTTGGCCTCATTTGGAACAAGCTGTGTGTAACTGTGGCTCCAAGAAATTCTTTTCAAAACACTCAATAAATGTTCTCCTTTTTAAGAAGTGAGGTGTtcctatattttttttacatgtttacatctgtatatattatcatcattagcAGCACCATTTGAAACTGTCAacgatacattttctttaataaatactgttcaTCAAAC

Function

symbol description
rnf26 Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF26 (ring finger protein 26).

NR:

description
PREDICTED: RING finger protein 26

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004457 False 1407 mRNA 0.62 1 50070535 50071941
TU10312 True 4318 lncRNA 0.49 1 50066484 50070801
TU10314 False 2775 lncRNA 0.48 1 50066398 50069172

Neighbor

gene id symbol gene type direction distance location
AMCG00004456 c1qtnf5 coding downstream 18324 50042259 ~ 50048074 (-)
AMCG00004447 NA coding downstream 224878 49839535 ~ 49841520 (-)
AMCG00004445 NA coding downstream 232658 49831199 ~ 49833740 (-)
AMCG00004446 NA coding downstream 243488 49820555 ~ 49822910 (-)
AMCG00004444 NA coding downstream 270214 49775924 ~ 49796184 (-)
AMCG00004460 cbl coding upstream 72769 50144710 ~ 50157745 (-)
AMCG00004461 cbl,LOC102793573 coding upstream 98135 50170076 ~ 50182056 (-)
AMCG00004465 NA coding upstream 116751 50188692 ~ 50197647 (-)
AMCG00004466 NA coding upstream 159333 50231274 ~ 50234343 (-)
AMCG00004470 NA coding upstream 209804 50281745 ~ 50285988 (-)
G8350 NA non-coding downstream 28043 50033396 ~ 50038355 (-)
G8347 NA non-coding downstream 46374 50019824 ~ 50020024 (-)
G8346 NA non-coding downstream 50613 50015539 ~ 50015785 (-)
G8345 NA non-coding downstream 51646 50014390 ~ 50014752 (-)
G8343 LOC107718271,LOC107690455,LOC107585544 non-coding downstream 53017 50013144 ~ 50013381 (-)
G8370 NA non-coding upstream 55831 50127772 ~ 50135731 (-)
G8500 NA non-coding upstream 597005 50668946 ~ 50674553 (-)
G8505 NA non-coding upstream 609689 50681630 ~ 50681962 (-)
G8524 NA non-coding upstream 622633 50694574 ~ 50694803 (-)
G8541 NA non-coding upstream 649238 50721179 ~ 50722312 (-)
G8340 NA other downstream 57704 50005132 ~ 50008694 (-)
G8310 NA other downstream 116806 49948861 ~ 49949592 (-)
AMCG00004429 NA other downstream 641216 49411207 ~ 49425182 (-)
AMCG00004420 NA other downstream 1081087 48940024 ~ 48985311 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 1585683 48463181 ~ 48480715 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other upstream 138042 50209983 ~ 50225826 (-)
G8501 NA other upstream 599125 50671066 ~ 50673375 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other upstream 638898 50710839 ~ 50720925 (-)
G8542 foxred1 other upstream 651926 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 659022 50730963 ~ 50738516 (-)

Expression


Co-expression Network