AMCG00004467 (trappc4,LOC106612982,LOC107561742)


Basic Information

Item Value
gene id AMCG00004467
gene name trappc4,LOC106612982,LOC107561742
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50209983 ~ 50225826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004467
GTTTCAGTCATGTCACTCTGTCTCAATACAATTAATGAGTCTCTTCATCTAACAGCATTGCAGAATTGTAAGTAGACAGACTCCTATAGAGAATCAGTCCCACCAAGTATACTGATAGTGGCTGAAGAACTCTTCAATACAAGTCCAATTTGTTTAGCCAGATCCACATGAGCATGTGCTTTAAAAAGATAACGTCCACTTTCTGTGATCAAACCAggtcaaatgcattttccaGCTGTTTAGATCCTTCTTCATAGAAGTTGTCAGCCCAACCAAGGTTCAAGATGTAGTTGATATTTAGCTCTCCTGAAGATATGCATATTTTCCACAATGAGATCATCGGTCACCACCGCACATCGATCAAAAGTGATAGCAGCCTCCGGTCACTGTTCTTTGGACAGACAAAGCGCTTGCGCCTCGCTGGTGGACCTCCATGTGCATCCTAATTGGGGAGCTTTGCATACAATTGAACACGATATATCAATTAGATGACGGACATCTTGAAGGGGAGGGACACTAATCAGAGATTGGGGTGTATAGGCCACTGAATCTAACTTTAAGGTCTGTGGTAGAGGCGCTGTTGGAGGGGACGTAAAACACAACCAAACATGTTTCTACAGTTGCAGAACAGAGATAGTTTCCTTGACCTCCATCAGACGACTTGTCTTAATGACTGGGATATGAATGAAGAGATTAAGCTGGCCACAACTACAGACCAGTTTTATCAAGACGAGAAGCGGAATGACCAGTATCTGGTGCAGTGGCATTACGCCAGGTTTTCCAGACGCTCCTCTTCGGGGAAAGACGACTCTCCCTCCCAGTCTCCCTCTGAGATGGACGAGCCCCAGATACAGCCCAGTCTGTGGCTGGTGGTCAACCCATGTCTTGTCTGTCCCATCAAATACCCATGTCAGATGACCCAGGTGTCCCCCCCAGCAGTAACAACGTGGTCCCCCCTGACTCCCAGCCCTGCCCTCAGCCCCCTGCCCCCTCTAGAGGAGCCAAGCCTGGATGAGTCTCTGCTCTCGGGGTCTTCATCCAGCGAATTCATGTTCACAGATGATGATGACACCTCCTCTGTGGACGTCCCTGTTCCTCGTAAGCCCAAGACCACCCGCAAGCCCAAGGCCCCGAAGGAGAGGGGCCGTAAGCCCGGGCCGGCCCAGAGCAGACGCCTCGCCAGGGTCCTGCAAGAGAGTGGCAACCTGAACAAGGGAGGCTGGCCCCGCCCACCGGTCAACTACTGCATCCTCATTGCCATGGCGCTCAACAGCAGCCGCTGCGGCAGCCTCAACGTGCAGCAGATCTACAACTTCATGCGGCAGACCTCCTTCGCAGGGAAAGCGCATGTCTATGAGAAGACGcatcaaaacaaactgaaagccGTCCTGGGCAAATTCATGGACAAGGTGAAGGAGGCCCGCAGGACCCTCAGGAGCCCACAGGTGGAGAAGTTTGACTGCACTAAGCATGAGAGCAACTTCTGGTGCTACTGCTGTGGGGCGGAGGTGCagaaacacattacaaatggCAACCTGACAGTGCTGCATGGAGGGTTGTTGGAGCACATGGCCAGCCCTGAGCACAGAAAGAACACGAACAAGTTCTGGTGGGAGAATAAAGCAGACTCTAAACTGAAGGAGAAGTTTCTAGTCACAGAGGAGGAGACTGACAGGTTTAAAACAGAAGTGGCCAAAGCACTGGAAAactttgaagaaaaagaagatgaaTTCATAAAACAGCAAGCTGCCCGTATACGAACCCTGGAGCAGGAGAGACATGAAATCCTGCAGGCCCTTGTAGAGCCTGAGACAGAGCAGGAGCTGCCCAGTGGACTGGAGGAGCCCCACGTCAGCTCTGGAACCAGCTCCTTCTGCAGGACACGGGGACCGTCGGATGGACCAGACCTAATGGAGGACCCCGAATGGCCAGGCTTAGAAGAGAGCTTAACTTTCATTGGCTACCAGGATACTGCCAAGGGTGGGAACATCCATACAGGAGCTACACCGCCCTGGTTGCAGGCCGACCCGCAGGAGGGGCCGGCTGCTGGCATGGCACAAGAGATCGGCCCGTCTCACACCGAGTTCCTCAAACACAAGGAGCAGGAGAAGTTGCGGAAGCTGCCCGCTAATCGCGTGGGGGCAAATTTCGACCACAGCTCTCAGACCGACGCCAGCTGGCTACCCTCGTTTGGCAGGGTGTGGAACAGTGGCCGGAGGTGGCAGTCGAGGCACCAGTTCCGGGTGGAGGAAGGGCAGATGAACCAGAAGAGAAAAAGGGGCGGCGGGGGCAAAGGGAGTAAGAAACCACGTCTCCAAGACCCAGAATAACCACTCCTGGCAGCGGTCCGATTAACCCTCAAGCCAAGTGCAATGTATAGAAATGATGTAAATAATGAACTGCTTTGATAATAAAACGCATGTTTACGTTGGTCAAACTCGAATCCAGGATTAACAAGAATCCCGTAACCATTTAGGAATGTTTCCCTGCAGTAACTGCATCTCTTATGTGGAAGTGTATTGTATTCCATTTTAAAACTTAACACTTTAATTAGAACTTAAAGACTGTCCTGTTTCATAAATTCTAACCTGCATTTCAATTATGCTGCACTCAGTGAAAACCTCTAATATGAACATAATGGTCATTAGTGGGAATAGTGACATTAGAGGCAGAATAATGGGTTTGAAAGTTAGATTAACTTTCCTAGGTATTTGAAAACAGCTTGGAACAGTTAAAATAGTACTACCTCCACAATGCATttacccatttaaaaaaataaatacatactttctAGTCCAGAGGAACACATTTTCCATTGAGCATGATAATCTTAGTCACAGATCTGTTTAATGAGATGATTTAATGCTGATTTAGGACAACCCCATAGACCAGGTATCCCTCCACCGATTCATGCAAGAAATCTGCACTCAATACAACCCATCCATTCCAATGTCCTGAATCGGACTCAAAAGTAAATCCACAAATCACAagtgttcttttcatttttttattgtatattttacaatCCCAACAAAATCTTCACAGGCCTCCTTGATGCATaatctgTTTATGCCTCCTTCTCATCTCCAGGAGCATCACCACCCTTGGTGTTTCTCGTGTAGATGACCTGCGCTCTGTGTTTCGAAACGAGCTTGATCATCCCTTGAGAGACAGTTCCTGGAGAGCAGCCCTGGCCAGAGAGCCTCTGATCTTCAGCCTCTCGGAGACCACAGCAGGTGTGATGAGTTTGTAGTTGGGCACCTCCTTGTACAGCTTGTCATAGGTGGCCTTGTCGAAGAGGACCAGGTTGTTGAGCTTGTCCCTCACCTTCCCTTTGGACCACTTCTACTCAAGGCCTTGCCTCCAGACTTATTAACGGGGTCCTTGTCCTTCTTTGAGGACTTTCCCgaatctttctttttcttatcgTCCTTCGGAGGCATGATGCTGCAGCGTCAAGATGTCggacagaaaggaagaaagccCTTGCGCGAACCCCTTAGAAGCCCCGCACATCCGTGAAACGCGGAAGTTTAACAGGCGGACCCGAGGGgtttctgggaaatgtagtgctTTACTGTAGAGCAACGCCCTTTCCGGCAGAGACGTAATGCAGTGAGCTGGGGAGGAGCGTCCGTGTAAACATGGCGATTTTCAGTGTTTACGTCGTAAATAAAGCCGGTGGATTAATCTACCAATATGACAACTACGTGCCCCGTGCAGAGGCCGAAAAGACTTTCAGCTACCCCTTGGATCTGGTCCTGAAGACCCACGATGAAAGGGTGATCGTTTCCTTTGGCCAGCGGGACGGGATCCGAGTGGGCCATGCCGTGCTCTCCATTAACGGCGTGGATGTCAACGGGAGGTACACGGGAGACGGGAAGGAGATCATCGAGTACCTGAAGGATCCGGCCAACTACCCCGTCTCTATCCGGTTCGGCCGGGCACGACTGAGCTCCAATGAGAAACTGATGCTGGCCTCCATGTTTCACTCGCTGTTTGCCATCGGCTCCCAGTTGTCGCCCGAGGTGGGAAGCTCTGGGATTGAAATGCTGGAGACTGACACGTTTAAACTGCACTGCTTCCAGACGCTCACAGGTATAAAGTTCATAGTGCTGGCAGACCCTCGACAGGCTGGGATTGATGCTCTGCTGCGAAAGATCTACGAGATCTATTCTGACTTCGCTCTCAAAAACCCCTTTTACTCTCTGGAGATGCCCATCCGGTGTGAGCTCTTTGACCAGAATCTGAAGGCTTCCCTTGAGGTTGCAGAGAAAGCGGGGACGTTTGGCCCAGGGTCGTGATCAAGTGTGGGGCTGAGAGCAGGTGCAGTGAGCCAGCGGGATCCCGTTTCTGGGGTTTTGTGTGAAGCAATTCTCAACTCTGTATGAAGAAAACCACTTGGGCTGATTTGTGGATATGGGGTGAAAAGCTGCAGCCTGCCTCACTGGAGATAATTTAAAGTCttatccttttaaaatacaagaaaatatgaTATCCTAAAGAGTcctattaaattaaacttaatcGTCCAAAGTGATCTTGGGCTTTGTAAAACTaaatttttgtgtgtgtgtgaactaaAACCATACCTGATATCTGCCTCCATCAACCTAAACTCTTTTGTGGTCTTCACACTGCattgtaaatatgaatgtgcAAGTTCCCTTGAATACGaatctgtaaataatgtataaataaagtaccTAGAAGTAATTTGCCTTGTCTAATCATGTGATGTTCTACAGCTGCTACATACAGCCTTTCCATTGACTGTCATTAGCTTTGTGTAGTGGGTTCTGTTAACACCGCAAAAACTGCTCCTACAATAaatctgatttgtatttatgtgttgc
>TU10376
ATTCATGCAAGAAATCTGCACTCAATACAACCCATCCATTCCAATGTCCTGAATCGGACTCAAAAGTAAATCCACAAATCACAagtgttcttttcatttttttattgtatattttacaatCCCAACAAAATCTTCACAGGCCTCCTTGATGCATaatctgtaaagaaaaacaaattggtttaatgaaaatatgcatTCACATCTGCAAATACAAAGCCTGTCCAGCCATGAGACCAGGACAGCTCCAGTTCTGGAACTGAACAACGAACACAACTCAAGACCACTGTTTCACTGTTCACAGATTTTAGATCAATGAGACCTGACCTGGTTAGGAGCATAATCTGATGTATAAAAgtagaacaaatatatatttcaccaaaTATAACCTAGTCTAGTGTAGTATGCACAGTACCTATCCACTAAATACAAAACCACTTTCATAAACCAGTCATTTTCTCTGAGCCGGAGTCCACCACACTGGACTAAGGCAAAGCCGAAGCAACCAGATGAGGGTGACGGGGGAAAAGCTGCTCACCTGTTTATGCCTCCTTCTCATCTCCAGGAGCATCACCACCCTTGGTGTTTCTCGTGTAGATGACCTGCGCTCTGTGTTTCGAAACGAGCTTGATCATCCCTTGAGAGACAGAAAAGGACAATTAGCTGCCGAAGACAAAAGCAGGCCTTATTATGTACATCTGTGGACTGGACAGTGAGTAGATAGCATCTCATCTTCCCTGGTCCTACAACATCCCTTTGAAATTAACACCTTTCCAACCCACTAAGTTATGGCAGCTCCCATAGGGCTGGCCTGATCATCTCTGCCCTACAAAAGCAGATACCTGGTATTCAAGGACTGCAGGACAGTGACTGACCTTTGTTGAGCAGTTCCTGGAGAGCAGCCCTGGCCAGAGAGCCTCTGATCTTCAGCCTCTCGGAGACCACAGCAGGTGTGATGAGTTTGTAGTTGGGCACCTCCTTGTACAGCTTGTCATAGGTGGCCTTGTCGAAGAGGACCAGGTTGTTGAGCTTGTCCCTCACCTTCCCTTTGGACCACTTCTCTTCTTGGCCTTGCCTCCAGACTTATTAACGGGGTCCTTGTCCTTCTTTGAGGACTTTCCCgaatctttctttttcttatcgTCCTTCGGAGGCTGCGTGTAGGAGAATTAAAAACAGTTACAGTAGTTGTTCATGGAAAGAATCAATGTACACAAAaccatgtaaaaataaatatgggaATAGACTAAatgattaacaattaaataaaaaagatcgtggtttaaatgcatttaaaatggtcGTTCTCCAGTTTTGAACGTGGATCGGATCTGTTAATATTACCGGTAATAGTACTGGCAGTGTATTGTAAGCATTTGAACATAGAACATTAACCACAAGTCGggaatgtatatataattcagGTTTTAGGATTAAGTAATAATGGTCCCCCCTGCCAAACACTACGTGCTTGTCAAAATATGtgggttttattattaacaattctGTGGGACAACAAAAGCTATATCCTATTATAACGTAAAGTTGATGcacaaatattaatatcaaGTAAAACTGATGCTGTATACAAGTCGACAGTGTAGGCCTCGCAGCACGTTGCAATACTGTGAAGGGCTGCACCATGGGAGCAATGTGCCTGGACGCTAAGGACgtaaaaatataagaaaatgcAGCCCTTTCCGAGCCCCTTTCCACGAATCTGCAAGGTCAAGACACCTGCCCACACCCCGGTGGAGAAATAAAAAGTCTCCACAAGCgactatgtttattttttccctaaaaACCTCGGACAGTCTGCTCACCATGATGCTGCAGCGTCAAGATGTCggacagaaaggaagaaagccCTTGCGCGAACCCCTTAGAAGCC

Function

symbol description
trappc4 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Orthologous to human TRAPPC4 (trafficking protein particle complex subunit 4).

NR:

description
PREDICTED: trafficking protein particle complex subunit 4

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0005801 cis-Golgi network cellular_component

KEGG:

id description
K20303 TRAPPC4, TRS23; trafficking protein particle complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004467 True 4856 mRNA 0.49 24 50209983 50225826
TU10376 False 1888 lncRNA 0.43 2 50212192 50214639

Neighbor

gene id symbol gene type direction distance location
AMCG00004465 NA coding downstream 12336 50188692 ~ 50197647 (-)
AMCG00004461 cbl,LOC102793573 coding downstream 27927 50170076 ~ 50182056 (-)
AMCG00004460 cbl coding downstream 52238 50144710 ~ 50157745 (-)
AMCG00004456 c1qtnf5 coding downstream 161909 50042259 ~ 50048074 (-)
AMCG00004447 NA coding downstream 368463 49839535 ~ 49841520 (-)
AMCG00004466 NA coding upstream 5448 50231274 ~ 50234343 (-)
AMCG00004470 NA coding upstream 55919 50281745 ~ 50285988 (-)
AMCG00004471 NA coding upstream 64116 50289942 ~ 50290739 (-)
AMCG00004475 NA coding upstream 414360 50640186 ~ 50660336 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 589896 50815722 ~ 50838107 (-)
G8370 NA non-coding downstream 74252 50127772 ~ 50135731 (-)
G8350 NA non-coding downstream 171628 50033396 ~ 50038355 (-)
G8347 NA non-coding downstream 189959 50019824 ~ 50020024 (-)
G8346 NA non-coding downstream 194198 50015539 ~ 50015785 (-)
G8345 NA non-coding downstream 195231 50014390 ~ 50014752 (-)
G8500 NA non-coding upstream 443120 50668946 ~ 50674553 (-)
G8505 NA non-coding upstream 455804 50681630 ~ 50681962 (-)
G8524 NA non-coding upstream 468748 50694574 ~ 50694803 (-)
G8541 NA non-coding upstream 495353 50721179 ~ 50722312 (-)
G8550 NA non-coding upstream 523192 50749018 ~ 50752724 (-)
AMCG00004457 rnf26 other downstream 138042 50066398 ~ 50071941 (-)
G8340 NA other downstream 201289 50005132 ~ 50008694 (-)
G8310 NA other downstream 260391 49948861 ~ 49949592 (-)
AMCG00004429 NA other downstream 784801 49411207 ~ 49425182 (-)
AMCG00004420 NA other downstream 1224672 48940024 ~ 48985311 (-)
G8501 NA other upstream 445240 50671066 ~ 50673375 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other upstream 485013 50710839 ~ 50720925 (-)
G8542 foxred1 other upstream 498041 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 505137 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1716867 51942693 ~ 51954532 (-)

Expression


Co-expression Network