AMCG00004470


Basic Information

Item Value
gene id AMCG00004470
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50281745 ~ 50285988 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004470
ATGGTCCTGCAGAGAGCCCCGGAGCGCGCGGTGCTGTGGGGCTATGGGACCAATGCAGCGAAGGTCACCATCACTGTGCTGGGCATCCAGCAGAACAcatcacacactgtcactgtggaGAAACggaTCTGGAGGGTGACACTAGACCCAATGAAGCCAGGCGGTCCCTACCTCCTACGTGCCGTCCAGCAGAGTGCAGAGGGTGTCCAAGTCCGAAATCTGACAGACGTGCTCTTCGGAGACGTGTGGCTGTGTGGGGGACAGAGCAACATGGAGATGACACTGCTTCAGGTGATGAATGCTTCTGAAGAGTTGTCTGATTTGACAAAATATCCCACCGTGAGAGTCTTCACCGCAGCTCTAGAGATGAGCGATATGGAGCTCACCGACCTGCCGAGAGTTGAATTGGTCTGGACTCTCCCTTCTGCAGGAGTGCTGGGTGGAGGGAACTTCACGCACTTCTCAGCGGTGTGCTGGCTCTTTGGACGCTACCTGTACGAGAGCCGAAGGCATCCAGTGGGGCTGGTGGAGTCATGCTGGGGAGGTACGCCTGTAGAGGCTTGGTCCTCAGAGAGGGCTCTGCAAACGTGTGGCCTAGCAAAGCCCAAACACAGTTTCCAGAATGCCGGGGCCTCGTGGGACAATACGGTGTTGTGGAACGCAATGATTCACCCTCTGCTCAACATGACAATCAAGGGAGCCATTTGGTACCAAGGTGAGTCAAACACAGAGTATCATCAGGACCTGTACAACTGTACTTTCCCTGCCATGATCGACGACTGGAGGATGGCATTTCACCAGGGCTCAGGAGGCCAGACCTCACCAGTCTTTCCTTTCGGGTTTGTCCAGCTCTCCACGTACATAAAAAGATCGTTGAGCGACGCTTTCCCCAACCTGCGGTGGCACCAGACGGCCGACTACGGCTTTGCCCCCAACCCCCGCATGAAAAATACTTTCATGGCTGTCAGCCTGGACCTGGGGGATGAGGCGTCTCCCTGGGGCAGCATCCACCCTCGCTACAAGCAGGATGTGGCGCACAGACTGACCCTGGGGGCTCGAGCCGTGGCCTACGGGGAAAAGGGGGTCTCCTTCCAGGGACCTTTTCCACAAGCTATTAGGCTTCAAGGGGAATATATCAACATCACCTACAGTGAAAAGGTTTCGGTCACCAAGTCCCACACTGCCTTTGAAGTGTGCTGCAGCTCCTCACAGAGAGACCACCGCAATGCCAGCTTTGCGTGGGTTCGAGCTCCGATCGTTGAGACCAGCAGTAATGTTGTAGTGCTGTCCACAGACAAGTGCTCTGATGAGGTGGCTGCCCTGCGCTATGCCTGGAGGGACTGGCCTTGTCAGCTCAAGGCCTGTCCGGTCTACAGCGCTGACCATGCACTGCCTGCTGCCCCCTTCATGCTGCCGGTCAAATCTTGA

Function

GO: NA

KEGG:

id description
K05970 SIAE; sialate O-acetylesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004470 True 1428 mRNA 0.56 9 50281745 50285988

Neighbor

gene id symbol gene type direction distance location
AMCG00004466 NA coding downstream 47402 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 84098 50188692 ~ 50197647 (-)
AMCG00004461 cbl,LOC102793573 coding downstream 99689 50170076 ~ 50182056 (-)
AMCG00004460 cbl coding downstream 124000 50144710 ~ 50157745 (-)
AMCG00004456 c1qtnf5 coding downstream 233671 50042259 ~ 50048074 (-)
AMCG00004471 NA coding upstream 3954 50289942 ~ 50290739 (-)
AMCG00004475 NA coding upstream 354198 50640186 ~ 50660336 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 529734 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 571958 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 735350 51021338 ~ 51025994 (-)
G8370 NA non-coding downstream 146014 50127772 ~ 50135731 (-)
G8350 NA non-coding downstream 243390 50033396 ~ 50038355 (-)
G8347 NA non-coding downstream 261721 50019824 ~ 50020024 (-)
G8346 NA non-coding downstream 265960 50015539 ~ 50015785 (-)
G8345 NA non-coding downstream 266993 50014390 ~ 50014752 (-)
G8500 NA non-coding upstream 382958 50668946 ~ 50674553 (-)
G8505 NA non-coding upstream 395642 50681630 ~ 50681962 (-)
G8524 NA non-coding upstream 408586 50694574 ~ 50694803 (-)
G8541 NA non-coding upstream 435191 50721179 ~ 50722312 (-)
G8550 NA non-coding upstream 463030 50749018 ~ 50752724 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 55919 50209983 ~ 50225826 (-)
AMCG00004457 rnf26 other downstream 209804 50066398 ~ 50071941 (-)
G8340 NA other downstream 273051 50005132 ~ 50008694 (-)
G8310 NA other downstream 332153 49948861 ~ 49949592 (-)
AMCG00004429 NA other downstream 856563 49411207 ~ 49425182 (-)
G8501 NA other upstream 385078 50671066 ~ 50673375 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other upstream 424851 50710839 ~ 50720925 (-)
G8542 foxred1 other upstream 437879 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 444975 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1656705 51942693 ~ 51954532 (-)

Expression


Co-expression Network