AMCG00004475


Basic Information

Item Value
gene id AMCG00004475
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50640186 ~ 50660336 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004475
GGGCGGCGCTGCGGGTTTGCTTTCAGCTCCTTAAACAAGCCTCTGTGCAATCCCAGCCTTTTCCACGTTACTTTCAGTTTACAGTCTTTCAAATCAGCATTtcgttgtttttttcctgggaTGCACCAGTGTTTTCTTTGACACATATCTGGCGTGTGTGTGAGCCGGGCACAGTTTGTGGGCTTTAGTTGAACGCCGAGCGCACAGTGGCACACCGATGGTGATCCTCAGCGTGAGGAATGGGCACAGAAAGAGACTTGTGGCTCTCGGTCTGATTTTTCTGGGGATTGTTGTGTACTACTATCTGAGAAAGCAGCCAGCGGGGATGAACATCAGCAGGAATGTGGGTTTGAAGGCAGACTCCCCCGAGTTCACCCTCGAGGGAGAAGCATTCAGGATCCTGGGGGGCTCCGTCCACTACTTCCGCGTCCCCCGAGCGTATTGGAAGGACCGCATGCTGAAGATGAAGGCTGGCGGCCTAAACACGCTCACCACgtaTGTGCCGTGGAATCTACATGAACCAGAGAGAggagtttttaatttcaaagacCAGCTGGATTTAGAAGCTTATATCAATCAGGCCGCGGAAGTGGGACTGTGGGTGATCTTGCGTCCCGGACCGTACATTTGCTCAGAGTGGGACCTCGGAGGGTTGCCAAGCTGGCTTCTCCGCGACAAAGATATGAGGTTGAGAACAACGTACGAAGGCTTTACAGAGGCTGTAGATGCATACTTTGACAAGCTCATTCCAATAGTTGTCCCACTGCAGTTCAAGAAAGGAGGACCAATAATCGCACTGCAAGTGGAGAATGAATATGGATCCTATGCCATGGACAAAGAATACATGCCCTATATTAAAGAGGCTCTCCTGTCCAGAGGAATAGATGAGCTGCTGATGACTTCAGACAATAAGGAAGGCTTTAAGCAGGGAGGAGTGAATGGAGCGCTGGGTACAATAAACCTTCAGAAGCTCAAACATCAACACATAAAGCATCTAGCTACTGCGCAGCCCCACAAACCTAAGATGGTTATGGAGTATTGGACGGGGTGGTTTGACTCCTGGGGCGACCTTCATCACATCTTCCCTCCTGAGGACATGGCCAACGTGGTGACCGAAATCCTCAGAAAGGACATGTCCATCAACCTGTACATGTTCCACGGGGGAACCAACTTTGGCTTCATGAACGGAGCCCTGGAGTTCAACATCTACAAGGCCGATGTCATCAATTATGACGCCCCATTATCAGAAGCAGGCGATTATACTGTGAAGTACCTTCTTCTGAGAGACATATTCAGCCGGTACCACAGTGAGAGGCTGCCCGACATGCCCACTTTGTCCAGAAAAGCAGCCTACGAAAACTCAATTATGTACCAACACGTATCGATGTGGGAGGCACTGCAGTACACAGAAGGGCCCTTCAAATCGGAGAGCCCAGTGAATATGGAGAACCTGCCTGTGAACAATGACAATGGACAGTCCTACGGCTACACTCTCTATGAGACCCAGATCAACCGTGGGGGGGTTTTGCATTCTCAGAACAATGTTCGAGACAGAGCCCTGGTGTTTGTTGATCAACAGTTCATTGGCATCCTGAAATATAAGACCGTGGAACTGGCTGTTCCTGACGGGAAGGGTGTACGGAAACTCAGTGTGCTGGTGGAAAACTGCGGGAGGGTGAACTATGGCAAAGTCTTAGATCAGCAGCGGAAAGGTCTCGTTGGCGACATCCTGTTGAACAATATCCCTTTAAAGGATTTCACTATTTACAGCCTGGATATGAAGCCTGGTTTCATAGATCGGCTCAGTGGAGCGCACTGGAAAGTCGCTCCAGACGCACCGACAGTTCCTGGCTTCTTCCAAGGGAGGCTGTTCGTGGATGGCTATCCTAGGGACACATTTGTCAAACTGCCGGGCTGGTCAAAAGGAGTGGTGTTTATAAATGGGCAGAATCTTGGGCGGTACTGGTCCATTGGTCCACAGCAGACCCTGTACCTCCCAGGCCCCTGGCTGCACAGTGGAATCAATCAGATCATTATTTTTGAAGAACAGGAAGCGGAGAAGAAAGTCCTGTTTGTGGACACTCCCGACCTCGGGATGACTGTGGATATCCAATGAATAAAAGTTAACAACATCAGTCCGTCCTGTGTTTATTCTTCGGATCATCGTAGAATACCATGCCGTTGTCCGACTAATGTGTttgttgatatttatttaatgcacaaCACCCAAACCACTCTGCAGGAATCAGTTGTCGTAGTTGTCTTGTGGAGTTTATTAATTCTTTTGGTCAATCAAAGGGTGTCCTATATCTATGCAACCTAAAAGAGaggttcatttatttattttttccatagaAAATATGATGTACAAAAACCAATGTGTTTTATCATCATTTCATGAACATTAACTTTTAGTGAATCCTCTAAGTTCTGTTGCTGTATTTGATTAAAGTAAAAAGCCAAATGGGACTGGACTTTACATTGAAACCTTGATATCCTCATGTCATATGAATAGAGAGAGAGCATGTATATACacttcaaaagtttggggtcagttagaaatgtccttgtttttgaaagaaaagcaaattttgtgtccattaaaataacatcaaatttatcagaaatacagtgtagacattgttaatgttgtaaatgactattgtagctggaaacggctgatttgtaatggaatatctacataggcgtacagaggcccattatcagcaaccatcagtcctgtgtttcaatggcacattgtgtttgctaatccaagtttatcattttaaaaggctaattatcattagaaaaccattttgcaattatgttagcacagctgagaactgttgtgctgatcaaagaagcaataaaactgtccTTCTTTAggctagttgagtatctggagcatcagcaattgtgggttcgattacaggctcaaaatggccagaaacaaagaactttctacTGAAACTcagtcagtctattcttgttctgagaaatgaaagcTATTCCATGccagaaattgccaagaaactgaagatcttgtacaatgctgtgtactactcccttcacagaacagcgcaaactggctctaaccagaatagaaagaggagtgtgAGGCCCCAGTGCAccactgagcaagaggacaaatacattagagtgtccagtttgagaaacagacgactcacaggtcctcaactggcagcttcattaaatagtaccggctaaacaccagtctcaacgtcagcagtgaagaggcgactccgggatgctggccttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaagattaagatgggcaaagaACACAGACCCTGGACAGAttaagattggaaaaaagtgttatggacagatgaatctaagtttgaggtgttcggatcacaaagaagaacattcttgagacacagaccaaatgaaaagatgcaggaggagtgcttgacgtcatctgtcaagcatggtggaggcaatgtgatggtctgggggtgctttggtggtcaattactatatttcctgttcattttgctatatttcctattcaaactcatttcatgtatgttttcatgggaAACAAGGTGAcaccaaacttttgaatggtagtgtatataaatcaatataaaacactgtgtgtgtattttagtgTTTATAGACAAAAGGAGCTTGCTGATAACCTTCCTACATGAAGGCTTTTACTTTACATGCCATTATTTCATCATCTCCATGTGTATGTATACGTGTTTGGCTGTCAAATATGTGCCTTCAAAAAcctgttttacattattatgttttcatgttttgtcgATGATGTAATTATTAACTTTTACAACTACATTGGGATCTGGGTTAAAAAAAGGATCACATATGCTAGATGACTGAATTGCACAGTGCAATGTTATGAATGATGCAGATGTTGGTCCACATTGTTGCTTTACTgtgaatttttttattttattgaaaatataaatcgtataaattgtttattgaagaaaaatgaagaaaaaaataattgaggcatatgtgtattttaagtgtATGTTTGTAC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004565 beta-galactosidase activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004475 True 4086 mRNA 0.43 19 50640186 50660336

Neighbor

gene id symbol gene type direction distance location
AMCG00004471 NA coding downstream 349447 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 354198 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 405843 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 442539 50188692 ~ 50197647 (-)
AMCG00004461 cbl,LOC102793573 coding downstream 458130 50170076 ~ 50182056 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 155386 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 197610 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 361002 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 818454 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 844132 51504468 ~ 51508828 (-)
G8370 NA non-coding downstream 504455 50127772 ~ 50135731 (-)
G8350 NA non-coding downstream 601831 50033396 ~ 50038355 (-)
G8347 NA non-coding downstream 620162 50019824 ~ 50020024 (-)
G8346 NA non-coding downstream 624401 50015539 ~ 50015785 (-)
G8345 NA non-coding downstream 625434 50014390 ~ 50014752 (-)
G8500 NA non-coding upstream 8610 50668946 ~ 50674553 (-)
G8505 NA non-coding upstream 21294 50681630 ~ 50681962 (-)
G8524 NA non-coding upstream 34238 50694574 ~ 50694803 (-)
G8541 NA non-coding upstream 60843 50721179 ~ 50722312 (-)
G8550 NA non-coding upstream 88682 50749018 ~ 50752724 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 414360 50209983 ~ 50225826 (-)
AMCG00004457 rnf26 other downstream 568245 50066398 ~ 50071941 (-)
G8340 NA other downstream 631492 50005132 ~ 50008694 (-)
G8310 NA other downstream 690594 49948861 ~ 49949592 (-)
AMCG00004429 NA other downstream 1215004 49411207 ~ 49425182 (-)
G8501 NA other upstream 10730 50671066 ~ 50673375 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other upstream 50503 50710839 ~ 50720925 (-)
G8542 foxred1 other upstream 63531 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 70627 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1282357 51942693 ~ 51954532 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110534862 LOC106603719 misc NC_048574.1 CM023228.2 20120958 ~ 20307243 (+)