AMCG00004480 (LOC107565095,LOC104942062,LOC107576893)


Basic Information

Item Value
gene id AMCG00004480
gene name LOC107565095,LOC104942062,LOC107576893
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50710839 ~ 50720925 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004480
ATGCCCGTGCCCAGCCGCGCTGCACCACCGAGCCTGACCCACACTGCCATGCTTGTGTGGAAGAACAGCCCCGCACACTGCAGTTACTCAGCCATCAAGAAAACCCACAGCCCACGCAACACTTCCATTGGCTGTGAAGGTCGGAGTTGCCAAACACACGTGTTCGGCGGTGCGGTGACGTCAACATGCGACACGTCGTGTTCCCTGATCACTGACAAGATGCTGGATTTCTTCACCATCTTCAGTAAAGGGGGCATCGTGCTCTGGTGCTTCCAGGGGGCCGGGGTCAGCGGCTCCTTCACCGGCCCGGTCAACGCGCTGATCCGCTCGGTCATCCTGCAGgAACGGAGTGGGAACAACTCCTACACCCATGACTCCTTGAGCCTCAAGTATAAACTGGATAACGAGTTTGAGCTTGTATTTGTGGTGGGCTTCCAGAAGATCCTGACGCTGACGTATGTGGACAAGTTTATAGATGACGTGCAGCAGCTGTTCCGGGATCGCTACAAGAACGAGCTGGAGCACAAGGGGGCTCTAAAGCTGCTCAACTGCAACTTCGACTTCAGCAAAGAATTCCACCAGCTTCTCCGGGAGGCGGAGGAGAGCAGCAAAGCTCGAGCCCCCGTCTCCATGAAGGCCTTCAACCAGTCCCAGAAATCCCAGAAAACTGTGAAGTCCATGATAAAGACCAACGGAGGGGACAAGGTCAAGGAGAGCAACCAGAAGAACAAAAAAGCCAAAATGGAAGCCCCGCCCCTGGCTGTGGAGTCGGTGGGAGGCTCTCCCAAAGGCGGGACCTCCGCTGGATCCCTCAAGACGGCGGAAAACGGGAACCGGGGCCTGTCGCCGGAGGAGATCGAGAAGAACCGCGCAGAGTTCTTCCGCAAGCGCATGGGAGGAGGCACGGAAAAGCCCAGCAAGTCTCCGAAACCGCCGTCGAAACCGCGGGGAAAGGAGAACCGCGTCTGGGACATGGGCGGCAACAGCAGCAAGCATCTGGACTACAGTGAGGAGAACAACTCCTCCGCCGGGGGCGCCGAGGAGGACTTCGCCGCAGATCCAGTGGTGCAGTGCAATTCCATGAAGGGAGATCTGCGCTCTGTGGATTACGAGTCCagcgaggaagaggaagaagaggaggaggaggagactgTGGTGGTCTCCAACACCAGAGAGAAAAGCTCCAAGAAGGGTGCGTTTGGGGGCATGTTCGGCATGCTGAAGGGTCTTGTGGGCTCTAAGAGCCTGTCTCAGGAGGTTATGGAGCCAGTGCTGGACAAGATGAAGGACCATCTCATCGCTAAGAATGTAGCAGCTGACATTGCTGCTCAACTCTGTGATTCAGTGGCCAAAAAACTGGAGGGTAAAGTCATGGGAACCTTTACCACTGTGGCCTCCACTGTGAAGCAGGCCCTGCAGGAGTCCCTGGTCCAGATCCTGCAGCCCAAACGGCGGGTGGACATCCTGCGGGACGTCCTGGAGGCGCGGACCCAGCGCCGGCCTTTCGTCATCACCTTCTGCGGGGTCAACGGGGTGGGGAAGTCCACCAACCTGGCCAAGATCTCCTTCTGGCTCATCGAGAACGGCTTCACGGTGCTGATTGCGGCGTGCGACACGTTCCGCGCCGGGGCGGTGGAGCAGCTGCGCACCCACCAGCGCCGCCTCAACTCCCTGCACCCCCCCGAGCAGAACGGGGGCCGGCCCTGCGTGCAGCTGGCTACGGCAAGGACGCGGCCGGCATCGCCATGGAGGCCATCGCCTACGGACAACACGCCCCTGATGACGGCGCTGGCCAAGCTGATCGCCGTCAACATGCCCGACTTGGTGCTGTTCGTGGGCGAGGCCCTGGTGGGCAACGAGGCGGTGGACCAGCTGgtgaaGTTTAACCAGGCCCTGGCCGATCACTCCATGTCCGACAAGCCACGCCTCATTGACGGCATCGTCCTCACCAAGTTTGACACCATCGACGACAAGGTGGGCGCTGCCATTTCGATGACCTACATCACCGGGCAGCCCATCGTGTTCGTGGGCACTGGGCAGACCTACAGCGACCTGCGCAACCTCAACGCCAGGGCTGTGGTCAGCGCCCTCATGAAGGCCTGAAGCCCGGACCCCCAGGCCCCGAGAAGAGATGCTGACATCGTGAAACACCgcaaagagaaaagaaacacgCTTCGAGAATTCCAGTCCTGCTACAGCGGCTTCCATCCTCACACCAGACCCACCGACCAACCGACGCGCACACACAGGCTTTCGAGCATTTCGACCCGGGCAAAACTGCGCTTGGCTTACAGCATGCTTTGTAAGTTCTGAACTCGACATCCACGCGTTTCACCCCTTGTCCCCTCCGAGCCCCGGGGGCCTCCGACACTGACCCCCAACGCGCGTCAGCTTTCCAAACCGGCGACGGAGAGCGGGAGACCCGTGGTAGAGAGCTCTGATGTCCCCCACGGTTCTTTTTATTGATAAACATGTTCGATTTTTAAGGAAAGTTATATTCAGGGATGAAAATGTTCGTTTTGGTTTACACAACTCCAGTTCCAGTTCCAGTGTTCTCATTTTTTGGCCTAGGTTGCCTTTCCTTTTCTAAATGTTCCAAAAAGCAGCAGCATGAACAACACCTCGAACCCCAGATCCCAGCACAGAGGTCTGAAGACACCAGTTTTAAAACCTCCACCCACATCTGGCCgaactgaaatgtattcacaGCCAGGCCCCCGGAGAGAGCCCAGTTACCACAGTGCCTATTGATGTCCACAAACCCGAGCACACGACTCCGCTGCGCGTGAAGGGTGTACAGTAGATCATCTCAATCCGGCTCCGAAATGTCCCAAATCCTGTGTGTCATCTCACATCTGCCTTTCGGTTTTGCTCTTGCACCTGCCAGGGCCTACTGTGTAATAGAAACTCCACTGACACAGCCAGAATAGCAACTCGAGTCcgctttcctttttttggaaGGCGCATCCGTGTGACTCGAGAACTGTTTTGCCGGCAGCCCACAGTGGCTTACAGCAGCCCTACACCTTTTGTCGGGGCTGTTCcagagatttaatttaatttttttttcttttgttttccaaaagaaatatataatactagTCTTAAAAGCCTCCAATCCCTTTAATTCTACAGTAGAGTAATGAGAGAAGCGAGAGCTATATAGAAAAAGACGTCATAATTTATGAGAATGTACTGCATTTCTTAAATAAAGCTGCTATGATGGCCGGTctggtgcatttgtttttcttgccctTCGTAACAATGGGCCAGTCTTGACAGCGGTGTTCTTGAGTGTGGAGGCAGGTGTTGTTCACTTCCTATCATGTCAGAAAAATATGGAAGTAGGGTGGTAAAATGCAAGGTCACTATTGGAATGGTTAGGAGAGTACGGTCTTTGTCTC
>TU10539
ggCCATAGGAATGAAACACAAGCACTTTtcatattgtgtgtatatatacttcAGCTAGATACTGAATTTAGTTAAGCTGTGATGCACCTTTTAACAAATGCCTACATTTACATGAGAGGTAACGGGTTTCCTTCACTCTTCTGCAGCTTTACTCCTTACACCTCTATATGCATGGTGTGCtgaatataataaacacatgcacGCATGCACAACACGGAAGCTtgtgcattatttatgtatataagaAATACCTTTGTAGAAGTCATTTCTGGTGACTGTGCTAATGCTGAAGCACCTGGACTGCAGTGCCCTCTCCACCCTCTGCCCACAGCCTGCGATGCCCGTGCCCAGCCGCGCTGCACCACCGAGCCTGACCCACACTGCCATGCTTGTGTGGAAGAACAGCCCCGCACACTGCAGTTACTCAGCCATCAAGAAAACCCACAGCCCACGCAACACTTCCATTGGCTGTGAAGGTCGGAG

Function

NR:

description
PREDICTED: signal recognition particle receptor subunit alpha-like

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005785 signal recognition particle receptor complex cellular_component
GO:0005047 signal recognition particle binding molecular_function
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K13431 SRPR; signal recognition particle receptor subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004480 True 3404 mRNA 0.55 16 50710839 50720588
TU10539 False 483 lncRNA 0.31 1 50720443 50720925

Neighbor

gene id symbol gene type direction distance location
AMCG00004475 NA coding downstream 50503 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 420100 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 424851 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 476496 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 513192 50188692 ~ 50197647 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 94797 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 137021 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 300413 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 757865 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 783543 51504468 ~ 51508828 (-)
G8524 NA non-coding downstream 16036 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 28877 50681630 ~ 50681962 (-)
G8500 NA non-coding downstream 36286 50668946 ~ 50674553 (-)
G8370 NA non-coding downstream 575108 50127772 ~ 50135731 (-)
G8350 NA non-coding downstream 672484 50033396 ~ 50038355 (-)
G8541 NA non-coding upstream 254 50721179 ~ 50722312 (-)
G8550 NA non-coding upstream 28093 50749018 ~ 50752724 (-)
G8552 NA non-coding upstream 34468 50755393 ~ 50756726 (-)
G8601 NA non-coding upstream 289893 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 1125987 51846912 ~ 51880156 (-)
G8501 NA other downstream 37464 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 485013 50209983 ~ 50225826 (-)
AMCG00004457 rnf26 other downstream 638898 50066398 ~ 50071941 (-)
G8340 NA other downstream 702145 50005132 ~ 50008694 (-)
G8310 NA other downstream 761247 49948861 ~ 49949592 (-)
G8542 foxred1 other upstream 2942 50723867 ~ 50725353 (-)
AMCG00004481 NA other upstream 10038 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1221768 51942693 ~ 51954532 (-)
G8760 NA other upstream 1344601 52065526 ~ 52065882 (-)
G8761 NA other upstream 1347128 52068053 ~ 52071586 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013617 srpra coding NC_007129.7 CM002902.2 44826173 ~ 44847855 (-)