AMCG00004484 (fli1,LOC106612965,LOC103145351)


Basic Information

Item Value
gene id AMCG00004484
gene name fli1,LOC106612965,LOC103145351
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50857946 ~ 50878635 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004484
aaaaaaaaatcatccgGTTAACTGTCTCTTTCGCTCTGCCACATCTCGGGGGCTGGGATTAATTCAGGAGCGTGTCATGTTTGGGATATTGTTGGGGTCCACTGAAAATTGCCCAAAATGGACGGAACTATTAAGGAGGCGCTGTCGGTGGTGAGTGACGACCAGTCTCTATTTGAGCCGCCATACGCCGCTGCTGCCCCCCTGCCCAAGCCCGACATGACCGCCTCAGGAACACAGGACTACGGGCAGCCCCACAAGATCAACCCCATCCCCCCGCAGCAAGAGTGGATCAACCAGCCCGTCCGCGTCAACGTCAAGAGGGAGTATGACCACATCAACGGCTCCAGGGAGTCCCCGGTAGACTGCAGTGTTGGGAAGTGCAATAAGATGGTCGGAGGGACGGAAGCGACTCAGATGAGCTACGGGAGTTACATGGACGAGAAGAATGGACCCCCACCTCCCAACATGACCACGAACGAGAGGAGGGTCATTGTCCCCGCGGATCCTTCTTTGTGGTCACAAGACCACGTGAGACAATGGCTGGAGTGGGCAATCAAGGAATATGGGCTGCTGGAGATCGACACGTCATTATTTCAGAGCACAGATGGCAAGGAACTCTGCAAAATGAGCAAGGAGGACTTTATGAGACTCACGTCGGTGTACAACGCCGAAGTTTTGCTGTCACATCTCAATTACCTCAGGGAGAGTAGCTCGTCATTATCATATAACACACCATCTCATACGGACCAGTCCCCTCGCATAGCTACTAAAGAAGACCCTTCCTATGAAGCCGTTCGAAGGACAGGATGGCAAAACAGTATGCACAGTGGAAAAGGCTCACCAGCAGTCACGCAAAATGTGTCCAAGACCTCAGAACAACAACGACCCCAGCCAGATCCTTACCAAGTTTTGGGACCCACCAGCAGTCGACTAGCTAACCCAGGTAAGACCATAAAAGCCCTGCAGCCCCACCCCACCGAGTCCTCCATGTACAAATATCCGGCCGACCTGGCCTACGTGCCCTCCTACCACGCCCACCAGCAGAAGGTGAACTTTGTGTCGCCCCACCCACCTTCCATGCCCGTTACCTCCTCCAATTTCTTCGGAGCTGCCGGCCCTTATTGGAGTTCCCCAGCAGGAGGCATCTACCCCAATCCCAGCGTCCCCCGCCACCCCAACACTCACGTGCCTTCCCATTTAGGCAGCTACTACTAA

Function

symbol description
fli1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Acts upstream of or within angiogenesis and positive regulation of DNA-binding transcription factor activity. Predicted to be active in nucleus. Is expressed in several structures, including angioblastic mesenchymal cell; cardiovascular system; hematopoietic system; mesoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in blood platelet disease and thrombocytopenia. Orthologous to human FLI1 (Fli-1 proto-oncogene, ETS transcription factor).

NR:

description
PREDICTED: Friend leukemia integration 1 transcription factor

GO: NA

KEGG:

id description
K09436 FLI1; friend leukemia integration 1 transcription factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004484 True 1215 mRNA 0.54 9 50857946 50878635

Neighbor

gene id symbol gene type direction distance location
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding downstream 19839 50815722 ~ 50838107 (-)
AMCG00004475 NA coding downstream 197610 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 567207 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 571958 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 623603 50231274 ~ 50234343 (-)
AMCG00004487 LOC100136491 coding upstream 142703 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 600155 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 625833 51504468 ~ 51508828 (-)
AMCG00004493 NA coding upstream 642221 51520856 ~ 51527595 (-)
AMCG00004497 NA coding upstream 938576 51817211 ~ 51832339 (-)
G8552 NA non-coding downstream 101220 50755393 ~ 50756726 (-)
G8550 NA non-coding downstream 105222 50749018 ~ 50752724 (-)
G8541 NA non-coding downstream 135634 50721179 ~ 50722312 (-)
G8524 NA non-coding downstream 163143 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 175984 50681630 ~ 50681962 (-)
G8601 NA non-coding upstream 132183 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 968277 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 1180101 52058736 ~ 52059501 (-)
G8759 NA non-coding upstream 1184769 52063404 ~ 52065450 (-)
G8765 NA non-coding upstream 1212234 52090869 ~ 52091247 (-)
AMCG00004481 NA other downstream 119430 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 132593 50723867 ~ 50725353 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 137021 50710839 ~ 50720925 (-)
G8501 NA other downstream 184571 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 632120 50209983 ~ 50225826 (-)
AMCG00004505 NA other upstream 1064058 51942693 ~ 51954532 (-)
G8760 NA other upstream 1186891 52065526 ~ 52065882 (-)
G8761 NA other upstream 1189418 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 1971848 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 2020124 52898759 ~ 52911752 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location