AMCG00004497


Basic Information

Item Value
gene id AMCG00004497
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51817211 ~ 51832339 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004497
ATGGATTACCCCAAGGACCAGAGCGGGGCGCACCTGCTGCAGCTGATGGAGATCCTGACCCCTGTCTCTGTCTCGACAGTGCAGGTGAgcttgcctgtgtgtgtggaggtcCCATCGGACAGCGAGGGCGTACAGGGGTACCCCATGAAGCTGACCTGCATCTCCTGCATGAGGAGGGAGGAGGTCGAAACCACCACCGAGGTCAACTGGTACTTCAATAGCAGCACTGGCAAACTGCAGACCCTGATATTCACGTTTCGCAGCGAGAAAGACAACTACACTAATATGAACTGGACTGGCCGTCTGCAGTGGGACGGCAGCCATGACCTACAGGACGTCTCCATCAGCATCGTCAACATCACCCAGAGCGACGCGGGCACGTACACCTGCGAGGTGAAGAGAGAGTTCATCTACAAAGTGTACAGGAAATCCCTCACCAGCACAAAGGTCATTTTCTTAGAAGTGAAGAGTGAAGCGAGTGAAGACACCACTGCTGTCTACTCTGAGATAATGATGTACTTCCTGCTAGTGTTTCTCACCTTCTGGCTGCTGGTAGAGATGGTCTATTGCTACAGGAAGATATCGAAGGCAGATGAGGTCGCCCAAGACAATGCGACAGACTACCTAGCCATTCCAtctgaacaaaaagaaaatccgGGTGTTCCTGTAGCGGAGTAAAAGTGATTATCTCAAACCCGAAtggtattttgtttctctttttgaaaCTATTTCTGCTCAGAAccaccctccccccccaccctctctctccctgtaccCTTTTGAGCATAACCGACTGGATCCATCCGCCCTGTTCCGTTTCCTCCATCACTCTGTGAAGCCCGTGGTATTGTCACTTCCATCTCCCTTCCCCTCCAAACCAACACCTTTTTAAGGATTCTATCTTTGTATTACTTTTGATTTACATTCATGATTAATACCTTTTCATTGGATGACAGATAAGTGGAAGATCACAAAGGTTTATTAATGTCACGGTACCTAATAAAGTACAAGACGTAACAGCATTAGTCATAGTAATAAGACAAGTCCTGTTTCCTGTCAGTAATAACAGCCAGCAGTTTTAATTGTACTtccttacattaaaataactgaaaatgttaaaaaggggTAAGATAGCTGATACCATATTCTCTTATTCCTTAATTGTACTCATGACGATTGCTGATAtggtttataatattgtttatatgCAAACAGTTTATGTTATTGATGTATATTGTCTTGAATAAAGGCAGCTACTAAATAACATAACTTGCATTAAATGTCCTGCCCCCATTGttcatgttctctctctctccgtcagTGAGCTCTTGCCATGATATATCAGCATCTGCGAAAAGCTAGCAATgaggtttttgtgtgtgaattgtgTGTCATTTCATTCCTTCTTCACATTTCTTGCTGTGACTTCACCTGACTCCAAAGAAAGTGTGCAAAGAAACCTGCTGTGCATTAACTAGGTGAGGCAAGGCGAGGAATTCATCAGACTCAATACACGTGACTGCTTTGCTTTTTTGGGGATGGGATGATTCACTTTAGTCAGGGTTGATAATGAGGCCGTTCTCTAGTGTGTAGGACTGATGCAGTTCAGTGTTGCCCGGCTGTACATCTGAATAAGCAAGTGAGAGGCTTTGGAAACGTTTCCCAGATAGATTTGCTTGCCCTCTTTGCCATGGTAATGTTCTTCAGCCAAGAATTACTTCGAACTATGAAGTATTTGGAAAATGTCTAATTCTCTTTAAGTGTCCGGTCTCGATCTCTTGAATGACCATACTAAAGTGCTACAGAAATaacattcaatataaaatatgacacAAAACAGGTGGTGTATGAGATATGTGGCTTTTGAATTGAAACCTCGTCCACATAAGTTTTAATGAGTAGTCATGTGTCATGCAGAATGCTCTGATAAAATAGTTTCACAtcaataatacttttaaaagaaTTTGAACATCATGAAGAGAAATCGAACATTCCTCAAAATGGTGGCACTGCAGCCAGGCTTGATTGTTctctttggttttcttttccaggGACTGATTGATATGTTACAGTAACAGCCGACCGGCACAAGAGGGAAGGAAACTGAAGTCCCTGATAGAACAAACAACACAGGTGTACCATGTTCTTAATCTTGGATGTCCCTTGCAGTTTTCCTGTTCGTACTATGAGTCACAAAACAGCTCTAAGCAGTCCTGACGTTAGCATAGTAGAATCGGCTCTTCGTCTTTGTGGTGTGTTGTGCAAAGAGCCTCCCCATTGGTCCAGCAACACTTTAAATTCACTCttgattttgtttagttttttccgtGACGCACGTTTGTGAAACGGTATTAGCCGAGATGCACTTTCCTCGTGGTGTTGAATGTCAGGCACCTGGCTTCACGCACTCAGTGAGACATGTTTGCGTAGCACAGAGAGAAATGTAGTCAGTAGTCACTTTCTGGTTTCACAAAGGATGGATTGCAAACCGCCGTTCTCAGTGTAATACGGACAACAGCGTGTAACTTTTTATTGTAGTTTAGCGGAACAGTGCAGCGCAATATTTTGGTCATTTTCACTGACATTTAGAAACTAGTGTTTTGACGTCTGTCTTCAGAAGAGACATCGACaccagtttgttttcttgggaGCGTTATACAGGTGTTCAAGTACTTTAAGAAACGGGtgctttttgatttgtttgctgttgatttcatttcctttttttccagtttttttttttatctcaggGATGACACAATATAATCCGTAGGCTGGATTAGACACTGGCCTGGTTAATTACACAGAGGCAGCTGTAGGGAGGACCCAGACCATGGCCAAATCATCCCATCTCTCCTACCCCACCATCACTAGAGTCCCCAAGGTTGCGTGAATGGGCTCACGATCTAAAAAGGAACTGGGTcaaaaaaatcctgaaaggcACCATCAGCAGCCAAGGGGAAATCTGGCAGTGcggttaatttattattgtttgtttgcttcggCACAACATGGTGGCTTGGCTGTAATTATTTATCCGGATTACGAGCTAGCGATCCACTCTCAAAAATGAAAGGCTCGTTTTATCGGTGTGGGAACTCAAAGGAGtagtcattttaattgaaacaagGCATCTCAATTGTTAATTAAGCCAAATTCATTTTTCCTGCAGTATTATCATATTTAGCCTCGCCCTGCTCTTTCTGGGTGGCCTACTAAATATAGGATCAGTTTGAAAAGTGGAATGGAGTGGAATTATTTGAgcataaatgtttgttttaaaattatcatcatcattctcTTGCTAAAGCCTCTCTGACACGTCGTACTTCAGATTTCTCCCTCACCTCTCTCGAGTTCGTGCACACTGGTCCCTTGACTGACAAATTCCCAAATTGTCTTGGAGTAAAAGCAACACGTTCACTTTGAGAAATGAAACTTCTAATACAAAGTGTCATAGTTACATTGTGTTGCTGGAATCTTTATGGAAGCTGATGACGTGGCCTTTCAGGATGCTGGTCTCAACCCTTCTCTGCATTTTTCTCAATGGTATTGTGGCATCCCAAACACAGAATCATTGTCGCCTGCCAGATGATAATGTGAATGTGAGAACTGTGAGTAGCTTTAATCTGAGCAATGCACAACTGTTTAGGATTTTTCTTTACTGTATATACGTGTGGACAGCATGCTTGATAAGTATGACTTTTCTGGAAATTTGTGACTAGTCTTGTGTACCAGatatttgacatttgtttttattgtgagaAACGAAGGCACAAACCTGTCTCTATGGCTTGTTCATATTTAAAGGCAGACTATTCCAAATTGAAGAAtgatctgaaaaacaaaaggtacATCAACAGCACTGATCAAAATCATGACATACAAGCAAACCGACACAGTTTAGCTGGTGCATTTGAAGGTGCACAAAGTTGCAGTGAAGGTGGGAAGTGAATACACGGACAATAACCAATCGAAGCAgaattttgtaacattttatctGATATACCTGTACTTTATAATCCACAcatctgtgttttaataaacactttttttttgttattttttggtaCGAAAGATCTTGTTTTCATCTGttaaaaagcatatatatagtttaattacaCACTTTCTAATGACGCCCCGTAACTAAACCGAATCAAAGTGCATTCTGTTGTTGACTGTTAACATGGCCTAAATATAACCCATCATCTTCTTATAACATTTCTATTTAAGAGCACTTTAGGTTTCAGGGAAATCCTGAGATCAATTCTTATTTACTTACTATTACTAGAAAACCACTGCCAGCTCTTTTCTACAGCTTGAACATGTTATAAATTATCTGTGGCATGTTGCCTTTGCACCATTGCCTTCCTATTACTATCAGTAAGACTAAATACATTGACTTCTGATCTCTTTAGATCTATAATATTAGCAATATATTCAGCTTTGTTGTTACATCAAACAACCAATTCCAGTGAGTATATATGATATTccctctgtttttattttctctgaagtTGTCCATATCCCCCGTTGTGTGGtcctatttattttggtaattagatttggggggaaaaagtgtGTGATTAAAGGCCAGAATGAAAGGTATTACCATTTCTCTCACTAGTATTAATCTCAGCTTAGCCAACATGGCAGTTATGCACGTCCAGGCCAAATTAGAGAATATGACGAGGTTTGTTTTCAACAGTCTGCCTTTAACTACTCCTGTCCTCTTCCTGTTCTAGATTGACTGTGTTTTGGCCTTGCTTTGGTTCAGGGAGAGATTCAACCTGAAAGATCCTTCTTACCTAAACATGTACAGTCCTTCCTTTTTATATTCGCCAACCTCTTTGTCAAGGCCACAGCGTTCACAATCACTGGATGAACCATGGACTGTCTGTTCAATTAGTTTTGCATCCGTGCTGTGGAAAATAATCGACCGATTAgtcaatttagtttttctgcccGTCTCAAAAGCAATGCATTCATCACAGTTGGCACAGTGGGATTGCTATTACATGGCGGCCAAAGCTTTTGATTGCTGTTGTCCCGTGTAATCCTGCAGGTGAGATTGCCtgggcatttttattttcatcctgTACCAAGTGCCGGTGCATTACGCTCCAAACCCAAATCAAAGCCAAACAGGACAAGAAGTATTTTACCATCTGGCCCTAAATGCAATCGCAGGGAGAATATTATTTAGTTCTTCTTTCCAGATTAAACATCTGTAgtttaaaacagttttgtgTTACAGATAGCTTCTGATGCAGCCAACTAGATTATGTGAAATCCCACTTGGCACTTAAGTGAGGATAGCCCACAGTATTACAGTACTGTGGTATGGTATCATCATTATCCCGGCTCTGAACTGATTTCGAATATTGTAGGTAATAAgatgtattctgtttttaaagattgttttaCAAACCATAATTTCTGGAAATGTGTGTTGTTATAATGGTGAgttttaatacagtaaatagGGGACCACAGTCATACACTGATCCCAGTGTTTTGATATGCTTTCCTGCTAAGCCGtgggtgtgtgaatgtgtgcagtgCATCCATATTGTATTACACTGATGTTTGGAGCTTTCTCTGGATACTTTTTGGTACTCAGGATAATTTTAGGTTGAATTTGTCCtgtattattcatttgaattacaaataattggCTACATTTAAAGGgatatgtttgctttttatatgaATGTGAAATGCTCTCACCTTGTGTGCTCAAACTGATATCCcctttaaataaagtgcatgcaaatgacaataataaagaaacaaacaaaccaaaacaaaaatgaatgtaaacatttatCAAAACTGGCAAAACGACAACGGTATTGTTTCagcttctgttctgttctgcttCCATGAAtcctcgtgtgtgtgtgtgtgtgtcattagcCGTCACTCTCTCAACATTTCTCAGTCTTCACAGTTATACCTTCCGCCAGGTAATGACACTAATCTTTACACTTTTAAACTAATATGTGGTTTACAGACCAgatcaggaaaaaaatacaatgatgaCAACCAGCGTGCTTCAGGAGAAACATGGTTTCCACTACAGATGCCTCACAGGCTGGCTTCTTATATACTCCTAAGGTTTTTGATGATAATAAACAgttacacatacacagataaacCTTCTCAATTTTCCCAGGATGGTTGTATCGGCTGAACTGTGATTTCTTGAAAATACTGCATCAGTTGTCTGGCATCTCATTAACTCATGAAACATCAGCCATGCCCAGTTACAGAATGGGTTTGACAGATgctattttttccccaagactAATACTTGAATTATGTGGAAGAAACCATGGAAAAACTATTGGTTTACAATGATTCATTTCACATAGGATGTAGCTGCATAACCATCAGGACCAGAGACAGAAATGGAGAGGGGAAAGAGGATGATATAGATTTAAAGCacactttcaaaaacaataagtGCAACATCAATGTTTACACTCGGGTATGTGATGATTGTACTCATTATGGCTAAGAAACAGGTGAAGGATGTTCTAAACTAAACTGTGCTTTTAGCATCATATTTAAATCAAGAATTGCCCATTATAACATGGATATTACACTTTATTCCTGCCTCCGTAATGCAGGGTGGATTTACactctttgtttttcacattcccTCTCAACCTGAGGCGGCTTGTCCTTGAAAGACTGTACAGAAATACATAGAATACATCAACCGGTGGAGCGGAAAATTCAACTTCAAATCGGTCCTTTCCTCTTCTGTAGGGGGTTAAGAAGACCAAAGAGGAGGAATTAACAACAGATGATTTTTACAGACATGGCCGACACGTTTCAAATAACACCAGCTAGTGTGTCAACCTGCATGCACTATTGGagaatacaccgatcagccataacattatgaccacctgcctaatattgtgtaggt

Function

GO: NA

KEGG:

id description
K04847 SCN3B; voltage-gated sodium channel type III beta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004497 True 6940 mRNA 0.40 5 51817211 51832339

Neighbor

gene id symbol gene type direction distance location
AMCG00004493 NA coding downstream 289616 51520856 ~ 51527595 (-)
AMCG00004491 LOC100195238 coding downstream 308383 51504468 ~ 51508828 (-)
AMCG00004492 NA coding downstream 332779 51478790 ~ 51484432 (-)
AMCG00004487 LOC100136491 coding downstream 791217 51021338 ~ 51025994 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding downstream 938576 50857946 ~ 50878635 (-)
AMCG00004503 NA coding upstream 24519 51856858 ~ 51868538 (-)
AMCG00004502 NA coding upstream 37704 51870043 ~ 51918899 (-)
AMCG00004517 NA coding upstream 380291 52212630 ~ 52222193 (-)
AMCG00004519 tomm40l,si:dkey-71l1.1,LOC103030645,LOC107691796,LOC107603199,LOC107574698,LOC107745123,LOC107663776 coding upstream 395281 52227620 ~ 52232504 (-)
AMCG00004518 NA coding upstream 404875 52237214 ~ 52240865 (-)
G8601 NA non-coding downstream 806068 51010818 ~ 51011143 (-)
G8552 NA non-coding downstream 1060485 50755393 ~ 50756726 (-)
G8550 NA non-coding downstream 1064487 50749018 ~ 50752724 (-)
G8541 NA non-coding downstream 1094899 50721179 ~ 50722312 (-)
G8524 NA non-coding downstream 1122408 50694574 ~ 50694803 (-)
G8707 NA non-coding upstream 14573 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 226397 52058736 ~ 52059501 (-)
G8759 NA non-coding upstream 231065 52063404 ~ 52065450 (-)
G8765 NA non-coding upstream 258530 52090869 ~ 52091247 (-)
G8769 NA non-coding upstream 284541 52116880 ~ 52163082 (-)
AMCG00004481 NA other downstream 1078695 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 1091858 50723867 ~ 50725353 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 1096286 50710839 ~ 50720925 (-)
G8501 NA other downstream 1143836 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 1591385 50209983 ~ 50225826 (-)
AMCG00004505 NA other upstream 110354 51942693 ~ 51954532 (-)
G8760 NA other upstream 233187 52065526 ~ 52065882 (-)
G8761 NA other upstream 235714 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 1018144 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 1066420 52898759 ~ 52911752 (-)

Expression


Co-expression Network