AMCG00004505


Basic Information

Item Value
gene id AMCG00004505
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 51942693 ~ 51954532 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004505
ATGTCTCTCGTGTTGGTTGTAGATGCTCCCACGAACCAAACGCTGTATCACCGTTCATCTGATCAGGATAAGCCCCGGGTCCTGTCCAGACGTAGGATCTACACCCCCCCAGGGTCCTACCTGGAGCTGCAGTGTGTGGTGGAGAGCCAACCGGAGTCCGTGGTCAAGTGGTTAAACCCCGGGGGCACCATGCTGTCAAATGCATCCAACAGCAATGCGACCCTCACCCTGAACCCGGTGCAGGAGAGGGATGAGGGGATGTACGAGTGCAGCGCCACCAATGACTACGGGTCCGAAAAAATGAAAATCCGCATCGACGTCAACCCAGAAACAACTAAAACCGAGCGGTTGAGGTCAGAGTGGAAATACCCTGTAAAAGATGAAGGAGCAGCCGAAATACTGGCCCTTGATGAGCATGTGGATAAAAGGCACATCTCTGATAGTGGTCGCACAAATCCCCGTTAA
>TU10795
GTCATTTTCAATTTGGTTAACGGACAATAAGCActgcctttttttccttctcatgTGTAAATACAATGCTaatgtttgtgttaattataACAAAATGGCGACCACAAAACAATCGTGACAATATGGTGAAGTTGTATTAATCCTGGTCTTCAGCGGGTCTCCGATTCCTGAATCCTAACACAGCCTCGGTCGATGTCTCTCGTGTTGGTTGTAGATGCTCCCACGAACCAAACGCTGTATCACCGTTCATCTGATCAGGATAAGCCCCGGGTCCTGTCCAGACGTAGGATCTACACCCCCCCAGGGTCCTACCTGGAGCTGCAGTGTGTGGTGGAGAGCCAACCGGAGTCCGTGGTCAAGTGGTTAAACCCCGGGGGCACCATGCTGTCAAATGCATCCAACAGCAATGCGACCCTCACCCTGAACCCGGTGCAGGAGAGGGATGAGGGGATGTACGAGTGCAGCGCCACCAATGACTACGGGTCCGAAAAAATGAAAATCCGCATCGACGTCAACCCAGAAAGTACTCTTGCGGTTAGATTGGTCACATACCCATTGTTTGTGATAATTGTGTCATCTTTACTGCTCTACAGCAGATTTTGCAAAGATCATTTCCAGTCCATCTTC

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004505 False 465 mRNA 0.54 3 51942693 51954340
TU10795 True 627 TUCP 0.48 3 51953664 51954532

Neighbor

gene id symbol gene type direction distance location
AMCG00004502 NA coding downstream 23794 51870043 ~ 51918899 (-)
AMCG00004503 NA coding downstream 74155 51856858 ~ 51868538 (-)
AMCG00004497 NA coding downstream 110354 51817211 ~ 51832339 (-)
AMCG00004493 NA coding downstream 415098 51520856 ~ 51527595 (-)
AMCG00004491 LOC100195238 coding downstream 433865 51504468 ~ 51508828 (-)
AMCG00004517 NA coding upstream 258098 52212630 ~ 52222193 (-)
AMCG00004519 tomm40l,si:dkey-71l1.1,LOC103030645,LOC107691796,LOC107603199,LOC107574698,LOC107745123,LOC107663776 coding upstream 273088 52227620 ~ 52232504 (-)
AMCG00004518 NA coding upstream 282682 52237214 ~ 52240865 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding upstream 300311 52254843 ~ 52296244 (-)
AMCG00004522 NA coding upstream 363099 52317631 ~ 52336606 (-)
G8707 NA non-coding downstream 62537 51846912 ~ 51880156 (-)
G8601 NA non-coding downstream 931550 51010818 ~ 51011143 (-)
G8552 NA non-coding downstream 1185967 50755393 ~ 50756726 (-)
G8550 NA non-coding downstream 1189969 50749018 ~ 50752724 (-)
G8541 NA non-coding downstream 1220381 50721179 ~ 50722312 (-)
G8758 NA non-coding upstream 104204 52058736 ~ 52059501 (-)
G8759 NA non-coding upstream 108872 52063404 ~ 52065450 (-)
G8765 NA non-coding upstream 136337 52090869 ~ 52091247 (-)
G8769 NA non-coding upstream 162348 52116880 ~ 52163082 (-)
G8776 NA non-coding upstream 213808 52168340 ~ 52168541 (-)
AMCG00004481 NA other downstream 1204177 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 1217340 50723867 ~ 50725353 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 1221768 50710839 ~ 50720925 (-)
G8501 NA other downstream 1269318 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 1716867 50209983 ~ 50225826 (-)
G8760 NA other upstream 110994 52065526 ~ 52065882 (-)
G8761 NA other upstream 113521 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 895951 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 944227 52898759 ~ 52911752 (-)
G8937 NA other upstream 992280 52946812 ~ 52951387 (-)

Expression


Co-expression Network