AMCG00004517


Basic Information

Item Value
gene id AMCG00004517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52212630 ~ 52222193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004517
CTTGTTCCTACCTGCTCACAACGCTGAAACTTGTGCTTCAGCCCATTCTgtttcttgtctgtctgtctctctcgctctctcacacactctctcttctcttcacaAACGATTTCCTAGTGTGAGTTCTGCAAAACACCACTTGCTGCCTAATCGTCCGCGAGACTCGCCTCACTGGGACTTAGTCTACCAGGACTGGATGTACCTGGTGGTGGACCTCTGCCCAGGTTGTCCATCTGTGAGCAGCAGCCCAGGAGCCCAGTGACTGTGGAGAGAATGAGTGGAGGCCCTGACCAGGCCCTGAAAGGATGAGGAGGAAGACCCTCGCTTGGGCTTTATTCTTCTACCTGCTGTGGGGTCAACTGACGTCCTCAGACGGGCTGTCTCCTCCTGAGAATTTCACCTTAACCATAGAGGACTTCATAGCTGTTGTGTACTGGAGCCCAGCAGCCAGGAACCAAACAGACACCCTCTACACAATCGAGATGAAAAACCTGGGggaatcATGGAAGGAAGTTGACGGCTGCAGAGGCATCGAGTCCACGAGCTGCACACTGCCGCTGACTTTCGAAGACATCCATGGACACTACTTCATCAGGGTGAAGTCCATGCGGAGGAACGAGACCTCAAAGTGGTCTGATACCCTGCAGGTCCAACCTTACAGTCACTCAAAGGTGAGCCCCCCCATTGTCACGCTGTCTCTCCAGCACCGGGAGGTCAAAGTCAAACTCGAACACCCCATCAGCAGTCAGTGGGGAAACGCTGAGTACACTGTACAGCTTTATGAGAGAAGCACCCCCTGGGCCATCCAGAGGAAAATACTGATGAATATTTCGGATCCTGTCATCTGTTCCTTCGAGGGACTCATTCCGGGCTACCACTACTGTGTGAAGGCCAAAGTGCTAGCCTACAGTGAGAGCCCACAGTCCCAGGAGGCGTGTATCTTCCTGCCCAGTCGGAACGGGACAGCCATCTGGCTCCCAGTTAGTTTTGTGAGCTGTTTTCTACTGATAGTGTTCTTCCTGGTAGTAAGCCTATACATGATGGTGCAATGCTACCTGAAGCCCAAGCCCTCTAACCTCCAGACTCCTAAAACACTGGAGATTCTCACGGAAGGTCCAGGCAGAAGGTCCAGGCTCCGGGATGTGGTCTGGAGTCCCAAAAGAGCCCccatctcttctctctccctctcggaCTCCGATGCCCTGCTGTGCAGCAGCCTGCGCTTGGACAGCGGATACGAGCAGGGTTTCCTGAGCACCAGCAGCATGTCCAACTCGACCGTCGGCGACCAGGACTACAGTAAGAGGTGCTCGCTGTTTTACAGACTAGAGAGGGATGGGGAGGAATCGTTGGGGGAGGTGCTGGAGTGTGCAGAGAgcctccctccctgccctctTTCAGGCATCGACGAAGAGGAGTGGAGTTGGGGTCAGGCGCCTGATTTAGAGAGCGGTCCGGAGCAGCAGCAACCAGATATAACCAGTCTTGACAGTCCGGGTGTCCCGCTTTGCACGCTCTCTCTGGCCTACAACCTGGAGGAAGAGGCCCAGCCAGACAGCACTTGCAGGGACTACAGTGACAGCACTTGCTTGCACAATGCAGTTGACAATGCAGAGAATTCGGTTCTCTACCACGGGTGCACGGATGAGCCTCTCTCTCCAGGGTACCAGGCCCGATTGGGTGTGCTGGCAACAAAGCTCTGTAGAGAGTCGATCCCATGCCCAAGATTTGTTCACATCCTGCCCAGTGGGTATGAAAGCCGCCCAGATCCATGTGCCTATTAATCTTCGGGACCCGGCCTGACCAGATACAAtcacctgaaaaaaaaaagacatttggcTGCTGTAGAATGACTGGTGCTGCTGTGTTTCCACTCAGAGCCGGCTTCTAGTGGGCTTCATACTGCAGTCCACGGCATGGCTGGGGATCCACAGCAGAAGGCAATGGCCGCCATCTTTCTTATATATGTCCAGCTGCTCTTTggcatttttttccattatgtgTCCAAAAATGCACTACTTGGCAAAAGCCTGACAGGATATGAACACAAACAATGCCCCTGAGATGCAGGGAATGATGCTGACTGACTGGCAGATAAAGATGCTGCTTCCCTGGCCTGTCCACAGCTGGAGCTCTGGATCCAAGACAGTCTTTCCTATGACAGAGAGATCTCAAACTACCTCAGAAACCCAGTACGCCGGTCCCACACTCTCTAGGGTGGATATAGCAGTTAACCAAGCAAGACCTGAGGCTAATGAAGAAGCCTATCAATAGAATGGCGATGGTGCTTTGACCAGGAGTACAAATCATGTTGAGCAATATctctcacacaacacaatgttaTTAATATGCTGAAAGCTTGCACTGGGGGAAATGGAGTCTCCACCTCTTTTCGAACTTCAACTACAAGTACTGCTCTTGTCTCTTCTGGAGGACACAAGCTCTGTGGATGTCACAGTAGTTCAGTATACAGTAATGTTTATCAATAGCCAcgcattttcaaacatttgcaTCCAAGACAGCAGAATGACTTCCTTCTAAGACATGATGCCATTTCATGTCAGTTGtttttggattatttatttgtttgtttcacatttgttttttgcctCCAGCAAGGATTCCAGCCGTGGTGATTGAAGTTCATGCTGTTGGCTTAAAGGAAAACTTTGTTTATATCATGTACATAACTGAACCATTGTTGAACCTTCTCATACACCTGTACCGCGTAAAGTATTTGTtcaaactcaaataaataaaataatatctatatttctatatatgtCTTACTAAACTATGCCTTTCCCTGTGGTTACACACTATATGGGGTGTAAAGGAGTGCTCCAAAAGCTgtgaaaatcaacaaaatatgttttgggtGTTGGCAG

Function

GO: NA

KEGG:

id description
ko00513 Various types of N-glycan biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004517 True 2888 mRNA 0.50 7 52212630 52222193

Neighbor

gene id symbol gene type direction distance location
AMCG00004502 NA coding downstream 293731 51870043 ~ 51918899 (-)
AMCG00004503 NA coding downstream 344092 51856858 ~ 51868538 (-)
AMCG00004497 NA coding downstream 380291 51817211 ~ 51832339 (-)
AMCG00004493 NA coding downstream 685035 51520856 ~ 51527595 (-)
AMCG00004491 LOC100195238 coding downstream 703802 51504468 ~ 51508828 (-)
AMCG00004519 tomm40l,si:dkey-71l1.1,LOC103030645,LOC107691796,LOC107603199,LOC107574698,LOC107745123,LOC107663776 coding upstream 5427 52227620 ~ 52232504 (-)
AMCG00004518 NA coding upstream 15021 52237214 ~ 52240865 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding upstream 32650 52254843 ~ 52296244 (-)
AMCG00004522 NA coding upstream 95438 52317631 ~ 52336606 (-)
AMCG00004523 grik4,LOC108439963,LOC107676315,LOC106529682 coding upstream 131179 52353372 ~ 52399171 (-)
G8795 NA non-coding downstream 8950 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 44089 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 49548 52116880 ~ 52163082 (-)
G8765 NA non-coding downstream 121383 52090869 ~ 52091247 (-)
G8759 NA non-coding downstream 147180 52063404 ~ 52065450 (-)
G8829 NA non-coding upstream 147046 52369239 ~ 52369463 (-)
G8833 NA non-coding upstream 331726 52553919 ~ 52554373 (-)
G8981 NA non-coding upstream 879708 53101901 ~ 53104836 (-)
G9002 NA non-coding upstream 925572 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 1058858 53281051 ~ 53284971 (-)
G8761 NA other downstream 141044 52068053 ~ 52071586 (-)
G8760 NA other downstream 146748 52065526 ~ 52065882 (-)
AMCG00004505 NA other downstream 258098 51942693 ~ 51954532 (-)
AMCG00004481 NA other downstream 1474114 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 1487277 50723867 ~ 50725353 (-)
AMCG00004529 bco2 other upstream 628290 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 676566 52898759 ~ 52911752 (-)
G8937 NA other upstream 724619 52946812 ~ 52951387 (-)
AMCG00004551 NA other upstream 956829 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 1464223 53686416 ~ 53863369 (-)

Expression


Co-expression Network