AMCG00004523 (grik4,LOC108439963,LOC107676315,LOC106529682)


Basic Information

Item Value
gene id AMCG00004523
gene name grik4,LOC108439963,LOC107676315,LOC106529682
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52353372 ~ 52399171 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004523
ATGTCAGCGTGGCTTTGCGGATCTCTCCGGGCTTTGGCAGTAAGCGACTCCGTGGGCTCGATCGGGGgcacattaaatattgaaTCCAGCGCTGACAGACTCCGCTTGTGTGCCGAGCAGGTCGGGGCAGAAAGCAGTGTCGCGGCGATCCTGGATGACCCGATGGAGTGCAGCCGAGGCGAGCGGCTGGCCATCACGCTGGCGAAGGAGAGGATCAACCGGGCCACAAACCGCTCCCAGACCGCCAAGCTGGAAGTGGACATCTTCGAGCTGCTGAGGGACAGCGAGTACGAGACCGGAGAGACCAtgtGCCAGATCTTATCCAAGGGGGTTGTGGCGGTCCTGGGCCCCTCTGCCAGTCCAGCCTCCAACTCCATCATCAGCAATATCTGCGGCGAGAAGGAGGTACCCTATGTCAAGGTGGCCCCAGAGGACATCCTGAAGGTGCAGTTCCCCCGCTTCACTACCCTGAACCTCCGCCCCACCAACACCGACATCAGCCTGGCTGTGGCGGGCCTCCTCAACTTCTTCAACACCACCACCTCCTGCCTCATCTGCGCAAACGCCGAGTGTAAGCCTCCTGTTTTACTCAGTTTTCCCTCTGTGTTGGGACTTGTCATCACCTCCACCCATTGCTGGGACACGCCAACACAGGGCAGGAAGTGGAAACTCACCTCGGCTGGGGTCCTGCCAAACCCTGGCAACTCTAGCGTGAGGTTAGAAAAGAGGGGCACAGCTCTGGCTGTGGAGCTCTTTGAGgcagaaatgtatttgaagaacTGCGTGACAGAGATCGGGACCTTATCCCCTTACCCACTCTGTCTTGCAGAAGCAGAAGGCCTGCTCAACCTGGAGCGTTTGCTGAGGCAGTTCCTGATCTCCAAGGAGACGCTGTCCGTGCGCATGCTGGACGACAGCCAAGACCCCACCCCCCTGCTGAAGGAGATCCGGGATGACAAGACAGCCACTATCATCGTGGACGCCAATGCCAGCATGTCCCATATCATTCTGCAGAGGGTAGGACCCACCTCCGCCCCTTCCCCCAAACTCCAGGTGTCCCCGTAA

Function

symbol description
grik4 Predicted to enable kainate selective glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ion transport. Predicted to be located in membrane and synapse. Predicted to be integral component of membrane. Predicted to be part of kainate selective glutamate receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane. Orthologous to human GRIK4 (glutamate ionotropic receptor kainate type subunit 4).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004523 True 1065 mRNA 0.59 8 52353372 52399171

Neighbor

gene id symbol gene type direction distance location
AMCG00004522 NA coding downstream 16766 52317631 ~ 52336606 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding downstream 57128 52254843 ~ 52296244 (-)
AMCG00004518 NA coding downstream 112507 52237214 ~ 52240865 (-)
AMCG00004519 tomm40l,si:dkey-71l1.1,LOC103030645,LOC107691796,LOC107603199,LOC107574698,LOC107745123,LOC107663776 coding downstream 120868 52227620 ~ 52232504 (-)
AMCG00004517 NA coding downstream 131179 52212630 ~ 52222193 (-)
AMCG00004524 NA coding upstream 224235 52623406 ~ 52665227 (-)
AMCG00004525 NA coding upstream 327614 52726785 ~ 52733805 (-)
AMCG00004526 LOC103129659,LOC106941049,LOC104945933,LOC107657232 coding upstream 338967 52738138 ~ 52783362 (-)
AMCG00004528 NA coding upstream 410424 52809595 ~ 52821661 (-)
AMCG00004534 NA coding upstream 528190 52927361 ~ 52931681 (-)
G8795 NA non-coding downstream 149692 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 184831 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 190290 52116880 ~ 52163082 (-)
G8765 NA non-coding downstream 262125 52090869 ~ 52091247 (-)
G8759 NA non-coding downstream 287922 52063404 ~ 52065450 (-)
G8833 NA non-coding upstream 154748 52553919 ~ 52554373 (-)
G8981 NA non-coding upstream 702730 53101901 ~ 53104836 (-)
G9002 NA non-coding upstream 748594 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 881880 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 1094324 53493495 ~ 53493710 (-)
G8761 NA other downstream 281786 52068053 ~ 52071586 (-)
G8760 NA other downstream 287490 52065526 ~ 52065882 (-)
AMCG00004505 NA other downstream 398840 51942693 ~ 51954532 (-)
AMCG00004481 NA other downstream 1614856 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 1628019 50723867 ~ 50725353 (-)
AMCG00004529 bco2 other upstream 451312 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 499588 52898759 ~ 52911752 (-)
G8937 NA other upstream 547641 52946812 ~ 52951387 (-)
AMCG00004551 NA other upstream 779851 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 1287245 53686416 ~ 53863369 (-)

Expression


Co-expression Network