AMCG00004524


Basic Information

Item Value
gene id AMCG00004524
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52623406 ~ 52665227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004524
CTAGGCAATGTAGCATTCTCACCAAGGACCCCCCCCCTGACAAGAAGCACAAGAGTGACAAACCCACTGTCCCCTCGCATGAGTTTGACCCTACAGGGCTAGTTCAACGCTGTGTGATTATCCAGAGAGATGATAATGGCTTCGGGCTGACAGTGAGCGGAGACAATCCAGTGTTTGTGCAGCTTGTCAAAGAAGATGGCGCTGCGATGCGTGCTGGTGTCCAGACAGGGGACAGAATAATAAAGGTGAATGGGACCCTGGTTACACATTCAAACCATGTAGAAGTTGTGAAGTTAATCAAATCGGGCTCCTATGTGGCTCTCACAGTCCTGGGAAGACCCCCTGGATTACCCCAGATTCCTCTGTCCGAGTCGGAGGGGGATCCAGGAGCGCTGGTCCAAGGGGGGTCCTCAGTCACCTCTCCACACTCCCCCGGACAGACAGGAGGGGAACGCACATCCAGCCCCTCGGATCGCATCACTGCCCCTGTTCCCGTCTGGgaagaaaacaacattgtCCATAACCAGAAGGTAGATATCTTACAGAAGATGCTTTCCAAGGAGCAGCGAGATTTGCAGCTGATGAAGGAGGAGTACAGCCGAAACCCTACACCTAAACTACTGAAGGAGATCCAGGAAGCCAAGAAGCACATTCCCCAACTGCAGGTCCAGCTCAGCAAGGCCACCGGCGTGGTGCAGgACGGGCTGCACCCCTCTCGGTTGCCCTCCGACCCCCTGCAGATCACCGAGGGCGAGGACGGCAGCGGTGACGCGGACCAGACTCTCTCCCCGCGGGGCGACAGTGGCACAGAAAGCCCCCGGCCAAACAGCACGGGCTCCAGCTTCTCGCCCAGTCTGTCGTCCCCCTTCACGGACTCGCCCTGCCAAAGAGAGACGCCCTGCCACAGCCCAAAGACCACCCCCAAGGACAGGCTCAACTCCTTTGACTCTCCAGAGGCTGAGGAGACGGCGGacctgGACTCTCACTCGCAGTCCAGTGTGGGCAGCCCCCCGACTCGCCTGGCCTCCCAGATCATCGGAGCCGAGGACGACTACTTTGAGACGGAGCAGGAGCAGATTAATGGCCAGTGCAGCTGTTTCCAGAGCATGGAGCTGCTCAAGTCTCGGCCGGCACACCTGTCCGCGTTTCTCCACCACGTCGTGTCACAATTCGACCCTGCGCCGCTGCTCTGCTACCTCTATGCTGACCTCTACAAGCAGACCAACTCCAAAGAGACCCGCCGCGTCTTCATGGACTTCCACTCCTTCTTCATGGACAGAGGGGCGAATCTGAAGGTAGCTGTTCCTGAGTCCATCTCTGCAGAGCTCGAGAAGAGGAGGCCGGAGCTGATTCCAGAGGAGCTGCACAGGCAGTATGTTCAGCTGATGCAGGAAGCTCTGATGCCCGACATCCAGAGAAACCTAGAGGACTTCAGGCAGAAGCGCAGTATGGGACTGACGCTGGCTGAGAACGAGTTGACCAAGCTGGACACCGAGCGCATGAGGGACCGTGTGGCGCTGGAGAGGGAGCGCTCCTGTGCCGAGCAGATCATCACAAAGATCGAGGACGTCCTGGCGACAACACAATCCACAGAAGAGGAGAAGTGCACCACCATGCAGTACGTCATCCTCACCTACATGAAGCACCTGGGTGTGAAGGTGAAGGAGCCGCGCAACCTGGAGCCGAAGCGCGTCCGTATCGGCTTCCTGCCCAAAATCAAGAAGAGCATCAAGacggagaaggagggagaggagaaggtGAAGAAGCCGCGCTTTCCCAGCATCCTCGGCCAGCCCCGGAGGCCCAGCCGCCACGATAGCACTGCCATAGGCCGAGCCATCGAGATCAACAGGAGGACCCAGAAGCAGCCGTCCCAGCCGGCCCTCAGCGTCCCCGAGCACCCGGACCCCAGCCGAGCCCGGGGCAGCCAATCCAGCGAGGGATCGGACCCCATGCACACCCCGGCGCTGGCCACCTCGCCCCCCtacagcagcggcagcagctTGGCTGGCGAGCAAGGGGGGCGCGACTCCGACTCCGGCCTGACTCCCTCCTCGGCATTGCCTAAACAGAGCGAGGGTCTTCACTTGGGGGACTCCGCAGACGGCATGCCACGGACCCCCAACACCATCTTTGATTTCAGCCTCTCCGCTCTGGACCACCTACCGGAGGAGGAGCGGGAGATGGACAGGATCATTGAGAGTGGGACTCCCAAGGCCATCAGGAGGATGGACACGCTGAGCGGCGGGGAAGTGCAGAGCGAAGACGACCAGTGCTACGAGATCGACTCGGAGCTGGATCCCCCGAACTGGCAGCAGCTGGTGGGCAGGGAGGTTCTGGCCGGTCTGACGCCCCACGAGATCAAGAGGCAGGAGGTCATTAATGAGCTCTTCTACACGGAGCGCGCTCACCTGAGGATGCTGCGGGTGCTGGACCAGGTGTTCTACCAGAAGCTCACGAGAGAGGCCATCCTGCCACCCGCCGACATCAAGCACATCTTCGCCAACCTGGAGGAGATTCTACAGCTGCACGTTTCGATAATCGAACAAATGGCGACAATCCGAAGGAAGAACGAGACGTCCGTGATCGACCAGATAGGAGACGACCTCCTGTCTTGGTTCAGCGGCGGGGAGGAGGAGAAGATCAAGCGGGCGGTGGGCACTTTCTGTAGCAACCAGCCCTTCGCACTGGAGCTCATCAAGAGCCGGCAGAAGAAGGACTCCCGATTCAGTGCCTTCATACAGGAGGCCGAGAGTAACCGTCTGTGCCGCAGATTGCAGCTGAAGGACATCATCCCTGTGGAGATGCAGAGACTGACAAAATATCCCCTCCTGCTGGAGAACATCGCCAAGTACACAGAGGACAACGAGGAGAAAGAGAAGATCAAGAAGTCAGGCGAATGCTGTCGGCAGATGCTCAACTACGTCAACCAGGCAGTCAAGGAGTCCGAGAACAAGCAGCGACTCGAGGACTATCAGCGCCGGCTGGACCTCTCGTCCCTGAAGCAGAGCGAGAATCCGATGATCTCGGAGTTCAAGAACCTGGACCTGACCAAGCGGAAGATGATCCACGAGGGACCACTCTCTTGGAAGGTTAATAAAGACAAGACAATCGAGCTGTACACCTTGCTTCTGGAAGACATCCTGGTCCTCCTACAGAAGCAGGACGAGAAGCTAATCCTCAAGTGGCACAGCAAGAACCTGGCCGGCACAGCGGACACCAAGCACACCTTCAGCCCCATCATCAAACTCAACACCGTGCTGGTGCGCTCGGTGGCCACAGATAACCGGTCCTTCTTCGTGCTTTCCATGTCTGATAATGGTGCTCAGATCTACGAGCTGATGGCTCAGACAGTGTCGGAGCAGAAAACTGGTGAGCGAGAGGAAGTGGAGCTGATTGGCAGCAGCACGAACCAGAAACTGAACAAAGACTCCGACCGCATCTCCACCGGAAGCATCCAGTCCCCAGAGAAGGACGTGGGTGTGGTCTCGCCGGGGATGCTGCCGACTCCGCCCCCGGGCTCTGCATCATTCGAAGGGCATGAACCagaaggggaggaggaggcggagagCGACGTCAGGGAGGTGTCCTACCTGGAGCCCGAGCTGGAACACAGGCTGCCCTTCCTGCCCCAGAGGTCACGCCAGGGCGTTGCAGTTGACGACGAAGAGCCGGCCGCCTTAAGCATCCCACCCTCCCCGTCGAAAGCCCAGGAGGCACTCGAGAGCCtGGCAGCAATTAAAGAGTTCCTCGTCGGCCAGCTGCTcctggagagaggggagagcgGGAGGGCATCCCCGGACCCCCTGCGCGCCAGACCTGTCTCCTCAACGCGGCTCCTCCGCACGACGTCACTGCGCGGCCCCACGGACGGAGCCGGGCCGGGGGCCTCCTCTGCGTATCACTCCCCGGAGAACGGTGCGGAGGAGAAGGGTCGGGCCCTCGGGGGCAGTGACCCGGGGAGAGGCCTCAGACTGGGCCGGGAGATGGGCCGGGACCCAGCCTCCGAGGAGATGGACGAGCGGTTTTTCGAGGCTTCCAATGACTACAtgagctacctggtcctggagggctaCGGCGGCACGGGTGAGAGCAGTACCGATGACGACCTGCTGAGTGGTGCCAGAGACCCGGGAGGGCGGCGAGGGTCGGCTGGCGACTCGGGAATCGACTTGAAGAAACTGGCCTCGTTCTCCTCGCAGGCTGGTGGGGCGCACAACTTCAGGCAGCAGGTCATGACGCACTTCAAGGTCCTACAGGACAACCTGCAGATTCTTAAGATAAAAGTTAGTGAGGGCAGAAGAGTGCCTGCCCCTGCATCTGCCCcgggagggaggaggaagggacGGACGGAGtag

Function

GO: NA

KEGG:

id description
K07532 ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004524 True 4358 mRNA 0.60 36 52623406 52665227

Neighbor

gene id symbol gene type direction distance location
AMCG00004523 grik4,LOC108439963,LOC107676315,LOC106529682 coding downstream 224235 52353372 ~ 52399171 (-)
AMCG00004522 NA coding downstream 286800 52317631 ~ 52336606 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding downstream 327162 52254843 ~ 52296244 (-)
AMCG00004518 NA coding downstream 382541 52237214 ~ 52240865 (-)
AMCG00004519 tomm40l,si:dkey-71l1.1,LOC103030645,LOC107691796,LOC107603199,LOC107574698,LOC107745123,LOC107663776 coding downstream 390902 52227620 ~ 52232504 (-)
AMCG00004525 NA coding upstream 61558 52726785 ~ 52733805 (-)
AMCG00004526 LOC103129659,LOC106941049,LOC104945933,LOC107657232 coding upstream 72911 52738138 ~ 52783362 (-)
AMCG00004528 NA coding upstream 144368 52809595 ~ 52821661 (-)
AMCG00004534 NA coding upstream 262134 52927361 ~ 52931681 (-)
AMCG00004532 NA coding upstream 298986 52964213 ~ 52967709 (-)
G8833 NA non-coding downstream 69033 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 253943 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 419726 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 454865 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 460324 52116880 ~ 52163082 (-)
G8981 NA non-coding upstream 436674 53101901 ~ 53104836 (-)
G9002 NA non-coding upstream 482538 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 615824 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 828268 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 997157 53662384 ~ 53663246 (-)
G8761 NA other downstream 551820 52068053 ~ 52071586 (-)
G8760 NA other downstream 557524 52065526 ~ 52065882 (-)
AMCG00004505 NA other downstream 668874 51942693 ~ 51954532 (-)
AMCG00004481 NA other downstream 1884890 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 1898053 50723867 ~ 50725353 (-)
AMCG00004529 bco2 other upstream 185256 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 233532 52898759 ~ 52911752 (-)
G8937 NA other upstream 281585 52946812 ~ 52951387 (-)
AMCG00004551 NA other upstream 513795 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 1021189 53686416 ~ 53863369 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_03844170_03870555 ARHGEF12A coding CI01000072 null 3843492 ~ 3870555 (-)