AMCG00004525


Basic Information

Item Value
gene id AMCG00004525
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 52726785 ~ 52733805 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004525
ATGGGATCCGTCCCAGGCCGGCCGAGACCAGCCCTCCCTCCGCGGCGCGGCGCTGGAGATGAGCAGCGGCAGAGAATCGCCGCAGACCCGGCGTCCAGCATCGCTTCAGCCCGCTGCGCACATGCGCGACTCAGCCTGATTGGCTGGATCGCGCTCTACGCCTCTTTCTGTCACCTGAATGCTCGCCGCGGCTATGAGTGGAGCTGCCGCCTGGTGACGCTGCTCCACGGCATCCTGATCGTCTGCTCTGAAAACACCCCTCTGCAGGTCCAGGCCATGGTTCTCAGCCTGGGCTACTTCATCTTCGACATGTGCTGGTGCATCTACTTCCAGACCGAGGGCGGCGTCATGCTGGCCCACCACACCTTCAGCATCCTGGGCATCCTGCTTGCGCTGTGGCTGGGCGAGTCGGGGCCGGAGGTCAGCGCCGTGCTCTTCGGCAGCGAGATCACCAACCCCCTGCTGCAGGCACGCTGGTTCCTGCGCAAGACGGGCCGCTACGACAGCCTGGCGGGGGACGTGGTGGACCTGCTCTTCGTGCTGCTGTTCGCGGGGGTTCGGATCGGGGTGGGCGCCTGCATGCTGGGCTGCGAGCTGGCCTCCCCCCGGCCCAGGCTGGTCATCAAGGTCGGAGGGGTGGCCATGTACGTGCTCTCCTGGATCTTCATGGTGGACATTGGCCGTTTCGCCTACAGGAAGAGCTCTGCCAAGTACCGGCGGTGGTGGGCAAGCCGGAGCGGGGCGGCAGGAGCGGACACCAATGGGCATGCTGGGAAAGTAGACTGAAGGACTGGTCGCCCATCCTTCCTCCCTGGAAAGGGAATTTGTAGAAAaggaggttttgttttggaCAACTGCTTGAAGATTCCCTTTCCCTGTCGTCTGTAGCTCAGTAGAACCAATTCTTTTCATATTCATGTCACCgtactttcttttctttatcgTTGTGTCCCCAGCTGAccgtatttttaattaaacgcTGGGAAAGCTGTTAATTGGGACTTACAGTTCAGCACTGCTAGAGGTAGACGTTGGAAGAGATACTAAATTAAGTGTGTAGCTCTGAAAACTAGGCTCACACACAATCATCTATCCTGCTTTTCCcccttttgattttgttcatttatttcctGAGCTGCACACATGAAAAGCGCTTTAACTTGACAGTCACCTATTCCCCATCCCATTCCTTTCATCCCATTCTTACCTGCTGTTTTGTTCCTCTCCGTTTGACAAGACCTGATTGAATCTGGGCTCAGCTCACCTGTTCCCACTGAATGAAACCTTCTGCTGGAGATCCCCCAGGCAACTCCATGGGAAAACCTTTCAAAAGCGAGATAATTTAACATCTGTGGCTTGAACCTCGGTATTTAAAGTTCACCCCCAAAGAAACATTGTTATGTCTATATTTTCTCAGTCATAGTGGGTCACCGTTTAAACCCAAGAGGGGGTCTAGATATCCTCTTCTCCGATGGCCTGCTGGGAACACATGTGAAGTCTCGACTCTCACATACTCCTTCGTTTGTGTGAAGGAAACGTCAAACAAGACAGGGCTGTGGGGACAAAGAATGACCTGAAATCTGTCGTTTGGTTTCCCTGTGTTTTGCTCagtgagagggagtgagaggcACTGTGTCAAAAGACCTGTGGAAACGCTCCTGTTCTTAGAAGGTCCCCACAAATACTCGGAGATCTGCGGTGTAAGAACTAAATCTGTAGGCGGTTCTTGTATTTGAAAAGTGTCTCATTTCTGTTTGTACTTTTCAACTTTGGTTTATTGTAATTCTCTGCCAGAACACCCAAGTGTAAAAACACCGTTCTCTCCCCCAAAACCTTCTGTAAGGGCTTTTTTTATGAcactaaactaaaaaacaaagccATGATTTTGTTAAAACCTTCAGACAAATGAACAGTAGCCAAGCACAGGTTCCTAGCATTTGAATGATTGTTGTGTGTTAAGGGTCAGCCAAGAACTGGCATTGTGTTGAGCTTGTTCTTAAAACTAATGTCTTtaacattccttttttttaaatgtgcaatagGAAGATAGGACTTTTTGTTCCAGTAATGTTTTACACTGAAAGGATGCTTTTTAAACTAACGTCTTACTAAGTTTATTAGTCTGACTCCTGATCAAGGCACTGGTGTGAGAGACAACAGTTAATCCAACGGCAAGCGCTCTGTGTGAAAATCATTTCCACGTCTCTTCTCCAGCGTTTCAAAGTGGCAGCGATGTTAGAACTGCTTTAATTCTATACTCCTCTTTCAACCAGCCATCAAAACAACGCTTGACAGTGACTGGGTCTCCGAGGGGGTTGTTGAGGTGTCTGTTCTCGTTACGAGTGTCAGACGTGGTCCCTGGACATTTTGTCGACCTTCAGACACAAACGGTTTCCTTGCTTTGCTCGCAGCTTGACAATGAAACCAGCGGTTAGTGAAATTCACTTGTGTCGCAGTGTCACTTTAATACAAGATGAGGAAAATAGTGGCAGAGCTGTCGTGAGTGTGGAACTGGCGTGTTTGTTGAGCAGTGCACTATATAAACAGGCACCTTCCCCTCACATCCTTACAACAGAGTCTCCCAGAAGGCCTTGCAAAAACCCACACACTGTGATATCGCAGGCCTGGGGAGGGTCTCCGGTGACCGCAGTCTCTCAGAAGGGGAAAAGGTTGAAAAATGACCTTGCACAGAGGAGCGCCTTGCCTTTGGATCTCTTTCTAAACGACTTCCCgtctcttttgtattttaaacagtgagAAAACACTTTTACAAACTGAAGCCGTtttcttatacattttaactCGGATGGTTATTTTATAAATTTCTATTGAGGCgaggaaatgttttcttttgtattctgtaatcATCTTCAAGTCTCTCTTCAACCGCAGCGTTGTTTTAATCGACTTCTCTGGATTGTAAACCTGCTGTTGGTTTTTAAAGCCATCGATAGGCTCTTCTTTTAACCCTTTACATGAAAAGGAAGGGACCTACATCCATATTGAATGATTGAGTCTCGGATGGCTCCCAGTTGATTGTGCGCTGATTCAGCTGATCATGAGTTTCCATCGAggaatttaaatgtgatttttaggGTAAGACTTGAAGGTGAGGTTTGTAAATAAATGCCAGTTGATTGTGAGTGGAAGATGGATTCATTATCTGTTGTCTTTacacatattaataaaaaaatatag

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004525 True 3198 mRNA 0.48 3 52726785 52733805

Neighbor

gene id symbol gene type direction distance location
AMCG00004524 NA coding downstream 61558 52623406 ~ 52665227 (-)
AMCG00004523 grik4,LOC108439963,LOC107676315,LOC106529682 coding downstream 327614 52353372 ~ 52399171 (-)
AMCG00004522 NA coding downstream 390179 52317631 ~ 52336606 (-)
AMCG00004521 grik4,LOC108439963,LOC108277597 coding downstream 430541 52254843 ~ 52296244 (-)
AMCG00004518 NA coding downstream 485920 52237214 ~ 52240865 (-)
AMCG00004526 LOC103129659,LOC106941049,LOC104945933,LOC107657232 coding upstream 4333 52738138 ~ 52783362 (-)
AMCG00004528 NA coding upstream 75790 52809595 ~ 52821661 (-)
AMCG00004534 NA coding upstream 193556 52927361 ~ 52931681 (-)
AMCG00004532 NA coding upstream 230408 52964213 ~ 52967709 (-)
AMCG00004540 NA coding upstream 263307 52997112 ~ 52999812 (-)
G8833 NA non-coding downstream 172412 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 357322 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 523105 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 558244 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 563703 52116880 ~ 52163082 (-)
G8981 NA non-coding upstream 368096 53101901 ~ 53104836 (-)
G9002 NA non-coding upstream 413960 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 547246 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 759690 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 928579 53662384 ~ 53663246 (-)
G8761 NA other downstream 655199 52068053 ~ 52071586 (-)
G8760 NA other downstream 660903 52065526 ~ 52065882 (-)
AMCG00004505 NA other downstream 772253 51942693 ~ 51954532 (-)
AMCG00004481 NA other downstream 1988269 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 2001432 50723867 ~ 50725353 (-)
AMCG00004529 bco2 other upstream 116678 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 164954 52898759 ~ 52911752 (-)
G8937 NA other upstream 213007 52946812 ~ 52951387 (-)
AMCG00004551 NA other upstream 445217 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 952611 53686416 ~ 53863369 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008486 tlcd5a coding NC_007126.7 CM002899.2 22435460 ~ 22444746 (+)
eurasian perch (Perca fluviatilis) G13008 NA non-coding NC_053113.1 CM020910.1 55149 ~ 55402 (+)
tiger barb (Puntius tetrazona) G11669 sepp1b,LOC107729074,LOC107674235,LOC107679336 non-coding NC_056700.1 CM032069.1 12658294 ~ 12661872 (-)
mexican tetra (Astyanax mexicanus) G12860 tmem136,LOC108436527 non-coding NC_035898.1 CM008301.1 22528680 ~ 22531101 (-)