AMCG00004544 (LOC107600790,LOC107577576,LOC107735118)


Basic Information

Item Value
gene id AMCG00004544
gene name LOC107600790,LOC107577576,LOC107735118
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53117060 ~ 53150892 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004544
ATGGCTGGGGAAAGGCTCGGGCAGCAGCTGGGAATGAAGGTGTTGGCCTCAGCAGAGGACCCATCATCCTCTGTGCTCACTGCTTTAGCACAGTGTTTGCCTGTGCTGCGTGAGATCCCAAGGAAACCCCGTGCGCGGAGCAAGGCGGAAGCAGCAAACCCTGATTCCAAAATGGCCGGAGCCGACGGAGACGATTCTCTCTACCCCATTGCCGTGCTCATTGACGAGCTGCGGAATGAGGACGTGCAGTTGCGTCTGAACAGCATTAAGAAGCTGTCCACCATTGCCCTAGCGCTGGGCGTGGAGAGGACACGCACTGAGCTCCTTCCCTTCCTCACCGACACCATCTACGATGAAGACGAGGTGCTCCTGGCTCTCGCCGAGCAGCTGGGCAACTTCACCATGCTGGTCGGAGGGCCCGAGTACGTCCACTGCCTGCTGCCGCCCCTCGAGAGCCTGGCGACGGTGGAGGAGACGGTGGTGCGGGACAAGGCGGTGGAGTCCCTGCGCAAGATCTCCCACGAGCACTCCCCGGTCGACCTGGAGGTGCACTTCGAGCCCCTGGTCAAAAGGTTGGCCAGCGGCGACTGGTTCACATCCCGCACCTCCGCCTGCGGCCTCTTCTCCGTCTGCTACCCCCGGGTCTCCAGCACTGTCAAGGCAGAGATCCGCCAACATTTCCGCACTCTGTGCTCCGACGACACGCCTATGGTTCGCCGCGCGGCCGCCTCCAAGCTGGGCGAGTTCGCCAAGGTGCTGGAGCTGGACTACGTCAAGAGCGACATCATCTCTCTTTTCACTGCGCTGGCGTCCGACGAACAGGACTCTGTGCGGCTGCTGGCAGTGGAGGCCTGTGTGAGCATCGCCCAGCTGCTGCCCCAGGAGGACCTGGAGACCCTGGTGATGCCCACTCTGCGCCAGGCGGCGGAGGACAAGTCCTGGAGGGTTCGCTACATGGTGGCTGACAAGTTCTCGGAGCTCCAGAAGGCGGTGGGCCCAGAGATCACCAAGAACGACCTGGTGCCCGCATTCCAGAACCTGCTGAAGGACTGTGAAGCCGAGGTTAGGGCAGCAGCAGCCAacaaggtcaaagAGTTCTGTGAAAATTTGCCAGAAGACAGCAAAGAGACCATAATCATGAGCCACATCCTACCTTGTGTCAAGgaGCTGGTGTCTGACACCAACCAGCACGTGAAATCGGCCCTGGCGTCTGTCATCATGGGCCTCTCGACCATCCTGGGCAAAGACAACACCATCGAGCACCTGCTGCCCCTCTTCCTCGCCCAGCTGAAAGACGAGCTGTCCCAGTCCCTCCTGCCCGCTATCGTGGAGCTGGCCGAGGACGCCAAGTGGCGGGTGCGCCTGGCCATCATCGAGTACATGCCCCTGCTGGCTGGTCAGCTGGGGGTGGAGTTCTTCGACGAGAAGCTGAACTCGCTGTGCATGGCGTGGCTGGTTGACCACGCTGGCCCCTCACAGCAACTGGGATCTGGCCTCCGGAGACCCAGAACCAGTGGTGCTCCAGTGGGATGCTTCCACCGCTGGACCTCTGCCAGCCCCCACGCATGCTCTGGGGGAGACGTGCTGGTCTGCAGCTCTCTGGCTCCCTTGCTCTGGGCTGACTGGCTGATGACGGGCCCTTGTTTGGCCTACGTGGGGGCCGATGAGTTGTATGCCATCCGGGAGGCCGCCACCTGTAACCTGATGAAGCTGGTGGAGAAGTTTGGAGCCGAGTGGGCTCAGAACACCATCGTGCCCAAAGTGCTGGGCATGGCCAACGACCCCAACTACCTGCACAGAATGACCACTCTCTTCTGCATCAACGCTCTATCTGAGGCCTGCGGTCAGGAGATCACCACCAAGCAGATGCTCCCCGTCGTCTTGAAGATGTCCAATGACCAGGTGGCCAACGTACGGTTCAACGTGGCCAAGTCCCTACAGAAAATTGGCCCCGTCCTGGACAGCAATGCTCTCCAGACGGAAGTCAAGCCTGTGCTGGAGAAACTCACCACAGACCAGGACATGGATGTCAAGTACTTCGCCCAAGAAGCTATCAGCGTTCTCGCCCTggcttaaaaaacacacaaaaccgaAACAAACGAAATTAAAAAATCAGCCGGCCGCTCAGTCCGTGCCGAACGTACAAGACATCCCAAGACTTGCCGTGACTCTATTTATTGAATTCCAGGATCtggctacttttttttttttaaactggcaAAATCTGTGTGTTCCCTTCTTTGCTTTCAATGGTAGTAAGTGTACAAGGGAAGTACAGGTTTCCACAGTATTGGCAACGCTTGCTGTAAATCTTTAATTGCACTGAATGAGCCTGTCCGTCTGTAGACTAGACTTCACACAGCTCCACCCATCGGACCTGCTGTGGCCGCTACTGCAGTCTTGCATGGGAGTTGTAATCTCTTACTGTATCAATATTTCTGCTTAGTCTTCACCCTCTCATTTTGTACAGTCTGCTTTTGTAAACCCTCACTTTCCAGCACCAGGATACAGACGCTCGCTGTGATCCCAGTGAGCCGGGGACGGCCGTGCCTGCATTTTAGCCAATGCATGAGAAACACAGCCAACATGAAACCTGACCAGTGCGTCATACGTGCATCTTACCCTGGTCAGTGCAGATTACAGCCCCAGCGGGTTACggtttaatgtgtgtgtttggcaaGAAGTTGGAACTGCTCCCCAGATTTTTCTGTGCAATTAGTTATTAACTTCAAACTAGGGaccatcaaaaaataaataataattacctcTGAGTGAGGATTAATAGACAAGCGATGCCTAAAATCCATTAATGTCTTGTGGTGAATTGCCAGGGCTAGATGTCAAATTTGCCTCAGTTCTGCACCGTTAGTTTGGCTTTTTCCCTTTCTGTACATAGGTCTGCTTCTAGCTTGTGCGGCACAAGGTGTGATGCTGGTCGGTCGGTGATTTTGTTCTGTGTTCCAGCCTATTTTCCATCACATTTCTTGGGTGTCTTAGGATAAACTTACTCTCCTTGCCTGTTTGTGCCAATGACTGTGCTGTTGGAAGCATTCACTGTTGGGTTCAGTTTTCACCTCCTTTCTCAACATTATATAGgtaactgttttttatttttgtttattccgtttgtataaataaagtaaatagtgttttttttttttggcattaaACCACAAACGAGCCATGGGTCCCGTGTACAAATGCATTGCATGAGGAGTTGTATCTTGCAACACATTTAGCTGAACTTGCAACCATTGCAGCCAAAGAAGCTGGCTATGTGAAGTCTCACTCAGTGTCCCAAAATCCTCTGGGTGATACTCCATGTATCCGGGTATAGGGGGGTAAATGAATTCCCATTCTACAATCTagtaattaaccaattaatttaCTTGCTTGCTTCCCTCACTCCTGACCCCCTCTCCACCATTTACAGACATGTTTTTGAGTTTAAACCTTGATTGTCCTGTGTCAATAGACTGTGCTTTGgttttatataaatttaaaatcCCCTTAGAAGGGGTGATGTACTGTATATCTAGGGGAGAActtaataaagtaatacaacaaATTGTCGGTTCGctcgtgtgtgttttgtttggtcAGTGACCTTCAACGTCCTAGTTCCTGGTTTAGTGCTCGGCCTCAGGGTCCTGCCTGGGGAGCGATCAGTCTATTCCTGCCCGGCGCGGTGTGTTTCCTAGAAAGCGGACTGCACTGTGG

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like

GO: NA

KEGG:

id description
K03456 PPP2R1; serine/threonine-protein phosphatase 2A regulatory subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004544 True 3720 mRNA 0.53 17 53117060 53150892

Neighbor

gene id symbol gene type direction distance location
AMCG00004539 NA coding downstream 108436 53006399 ~ 53008624 (-)
AMCG00004540 NA coding downstream 117248 52997112 ~ 52999812 (-)
AMCG00004532 NA coding downstream 149351 52964213 ~ 52967709 (-)
AMCG00004534 NA coding downstream 185379 52927361 ~ 52931681 (-)
AMCG00004528 NA coding downstream 295399 52809595 ~ 52821661 (-)
AMCG00004553 NA coding upstream 979 53151871 ~ 53162352 (-)
AMCG00004552 alg9,LOC107691744 coding upstream 13781 53164673 ~ 53178444 (-)
AMCG00004550 NA coding upstream 45378 53196270 ~ 53202552 (-)
AMCG00004556 NA coding upstream 134402 53285294 ~ 53290739 (-)
AMCG00004557 NA coding upstream 146564 53297456 ~ 53298097 (-)
G8981 NA non-coding downstream 12224 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 562687 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 747597 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 913380 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 948519 52168340 ~ 52168541 (-)
G9048 NA non-coding upstream 130159 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 342603 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 511492 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 543312 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 546484 53697376 ~ 53700585 (-)
G8937 NA other downstream 165673 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 205308 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 242952 52850483 ~ 52874108 (-)
G8761 NA other downstream 1045474 52068053 ~ 52071586 (-)
G8760 NA other downstream 1051178 52065526 ~ 52065882 (-)
AMCG00004551 NA other upstream 28130 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 535524 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 881742 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 1205568 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 1290879 54441771 ~ 54450341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030508 ppp2r1ba coding NC_007116.7 CM002889.2 57773222 ~ 57798096 (+)
grasscarp (Ctenopharyngodon idella) CI01000059_02287710_02308577 PPP2R1A, PPP2R1B, PPP2R1B.S, PDGFB, PPP2R1A.L coding CI01000059 null 2286982 ~ 2308742 (+)