AMCG00004552 (alg9,LOC107691744)


Basic Information

Item Value
gene id AMCG00004552
gene name alg9,LOC107691744
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53164673 ~ 53178444 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004552
ATGGCGGCCAGGGGGTTCCGGCAGAGAAACAGACGAGGAAGCAAGCAAGATGCAAACAACGTGAACCCCAACACGGGCAGCGACCCCCGCATCAGAGAAGAGAGCAAAGCGTCGGAGGACAATAAAACCTCCGAGGTTAAGAATGACCAATGCTCTAAGTCTCTGTGCCCTCCCTGCCCTTGCCCTTCCTGCCTGGGTAGCTGCCCCCCCGAGCCGCACTCGTCCCCCTTCACCCAGCCTGTCTCCTGCTGCAGGGGCTCCAGCCGGGCCGGGCAGGTGTGGGCGCCCGAGGGCTCCACGGCCTTCAAGTGTCTGGTGTCGGCCCGCTTCTGCGCCGCGCTGCTCAGCAACATCTCCGACTGTGACGAGACCTTCAACTACTGGGAGCCCACCCACTATCTGCTGTACGGGAAGGGCATGCAGACCTGGGAGTACTCCCCTACCTACGCCATCCGCTCCTATGCCTACCTGTGGCTCCACGCGTTGCCAGCCTGCTTCCACGCTAGAATACTGCAGACCAACAAGgTCCTGGTATTCTACTTCCTGCGCTGCCTGCTGGCCTTCACATGCTGCGTCTGTGAGCTCTACTTCTACAAGGCCGTTTGTAAGAAGTTCGGGCTCCACGTTGGCCGTCTCATGCTTGCGTTCCTGGTGCTGAGCGCAGGGATGTTCACGTCGTCGGCAGCCTACCTGCCCAGCAGTTTCTGTATGTACTGCACTGTGGTGGCGATGACCGGCTGGTTCCAGGACAGGCCGGCGGTGGCCGTGCTGGGGGTGGCGGCCGGCGCCATCGTGGGCTGGCCATTCAGCGTCCTGCTGGGGCTGCCCATCGCCTTTGACCTGCTGCTGATGAAGAGGAAGTGGAAGAGCTTCATTACCTGGGCCCTGGTGGCACTGGTGCTGTTTCTGGCTCCCGTAGTGGCAGTGGACAGTTACTACTATGGCAAGCTGGTGGTCGCCCCTCTGAACATCGTCCTGTACAACGTCTTCACTCCCCACGGGCCCGATCTGTATGgcacCGAGCCCTGGCATTACTACTTTGTAAATGGATTCCTCAACTTCAACCTGGTGTTTGTGCTGGCCCTGCTGTCGCTGCCCCTCACCGCGCTGATGGAGGCTCTGCTGCAGCGCTTCAATGTGCAGAACCTCGGCCGCCCATACTGGCTCACCCTGTCGCCCATGTACATCTGGATGCTGGTGTTCTTCACTCGGCCCCACAAGGAGGAGCGCTTCCTGTTTCCCATCTACCCCCTCATCTGCCTGTGCGGAGCTGTGGCCCTGTCTTCACTACAGAAGTGCTACCACTTCCTGTTCCAGAGGTACCGCCTGGAGCACTACACCATCTCCTCTCACTGGCTGGCCCTGGGCTCGGTGCTGGTGTTTGCTGTGCTGTCCCTGTCTCGCTCCATTGCTCTCTTCAGAGGTTACCACGCTCCTCTGGATTTGTACCCAGAGTTCCACCGCATTGCCAAGGACCCCACCATCCACACCGTGCCGGAGGGGCGGCCcgtcaatgtgtgtgtgggcaAGGAGTGGCACCGTTTCCCCAGCAGCTTCCTCCTGCCTGACAACTGGCAGATGCAGTTCATCCAGTCGGAGTTCCGTGGCCAGCTGCCCCAACCCTACGACAAGGGTCCCCAGGCCACGCGGATCGAGCCCCCGCACATGAATGACCAGAACCTGGAGGAGCCCTCTCGATACGTAAGTACCCCTGCCACCCTTGCCGGCACTGACGACAATCTCGCCGCCCGGAAGACCTCGGACACAGAGCAGATAAACACTGCAGCCCAGGATCAGGGGTGTGAATACTCATTTAGTCCTCTTAATGAAGCTGCCCTGACTAAGGTTAATCTAAGGTTATTAAGGATCCATTGA

Function

symbol description
alg9 Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in central nervous system; epiphysis; polster; and retina. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Il. Orthologous to human ALG9 (ALG9 alpha-1,2-mannosyltransferase).

NR:

description
PREDICTED: alpha-1,2-mannosyltransferase ALG9 isoform X1

GO:

id name namespace
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K03846 ALG9; alpha-1,2-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004552 True 1875 mRNA 0.60 13 53164673 53178444

Neighbor

gene id symbol gene type direction distance location
AMCG00004553 NA coding downstream 2321 53151871 ~ 53162352 (-)
AMCG00004544 LOC107600790,LOC107577576,LOC107735118 coding downstream 13781 53117060 ~ 53150892 (-)
AMCG00004539 NA coding downstream 156049 53006399 ~ 53008624 (-)
AMCG00004540 NA coding downstream 164861 52997112 ~ 52999812 (-)
AMCG00004532 NA coding downstream 196964 52964213 ~ 52967709 (-)
AMCG00004550 NA coding upstream 17826 53196270 ~ 53202552 (-)
AMCG00004556 NA coding upstream 106850 53285294 ~ 53290739 (-)
AMCG00004557 NA coding upstream 119012 53297456 ~ 53298097 (-)
AMCG00004559 NA coding upstream 348424 53526868 ~ 53533837 (-)
AMCG00004558 LOC102781260 coding upstream 395086 53573530 ~ 53586212 (-)
G9002 NA non-coding downstream 16699 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 59837 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 610300 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 795210 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 960993 52203194 ~ 52203680 (-)
G9048 NA non-coding upstream 102607 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 315051 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 483940 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 515760 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 518932 53697376 ~ 53700585 (-)
G8937 NA other downstream 213286 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 252921 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 290565 52850483 ~ 52874108 (-)
G8761 NA other downstream 1093087 52068053 ~ 52071586 (-)
G8760 NA other downstream 1098791 52065526 ~ 52065882 (-)
AMCG00004551 NA other upstream 578 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 507972 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 854190 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 1178016 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 1263327 54441771 ~ 54450341 (-)

Expression


Co-expression Network