AMCG00004558 (LOC102781260)


Basic Information

Item Value
gene id AMCG00004558
gene name LOC102781260
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53573530 ~ 53586212 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004558
ATGATTTGCATATTGTTGGTTGCGGGTCATGGTGCCCTGCTGGAGTCCCAGATTCAGAATGATGGCACGGGTCTGTACAGCCACTTGACTGGAGTGCCCAAGGCCCTGCTGCCAGGAGTGGGTGGCAAGAAGATCCTGGACTTCTGGTGGGAGACTGTGAACACGCGCCAGTTGTTCAGCGAAGTCTATCTGGTCACCAACGCAGACAAGTACAAGCACTACGAACGCTGGGCCACAGCCAACGACTTCCCCGTGGAGAACGTGGTGAACGACGGCAGCACCACGCTGGAGGGCCGGCTGGGGGCCGTGGCCGACCTGGAACTGGCCATCCGCAGCCGCCGCCTCCGCGACGACATCATGGTGATTGCAGGAGACATGCTGTGTGCTGACCAGAACTTCGACATTGCCCAGGTCCTGCGATTCTTCCGGTCTAAGCCGGGCGATCTGGCCATTTACTACGagatggaggagggggagagcagCACTTCCCGGGGGATTGTGGAAGTGTGTCCCGAATCGCACAGGATCATGCACTTCCTGGAGAAGCCAGCGGCCGGGGTCACGGGGTCGCGGTTGGCCAGCGTGGTGTTCTACTGCCTGCGCAGCCAGACGCTGCCTTGCCTCGCCCGCTTCCTCGCCCTGCGGCCCAGAGTGGAGGACCGGACGCTGGGGCGGCTCTGGgagtGGCTGGTGAATGAGGAGAAGCTACCGGTGTACGGCATGAAGCTGCCCACAGGGTTCCAGCTCATCGGCCAAGTGGGGCTGTCGGACTACACCAAGTGGCTCGCCCACTATTCCACCAAACAGCAAGAATCCCTGGGCAAACCCATCCGGAGCCGGTCTTACGCCAGGGTCGGACTGATGGGAAACCCTTCTGACGGCTTCCACGGAAAAACCATCGCCCTGAGCATAGCCAACTTCTGGGCAGAAGTCAGCCTGACAGAGAGCAGCACGCTGTTCTACCAGTTCTGCTCCAAACAGGGCATCGCTCTAAGCAAGCAGAACTTCACTCTCAAGTACGACACCAACATCCCTCGCCAAGTGGGCCTGGCAGGCAGCAGTGCGATCGTGTCAGCCACCCTGAAGTGCCTCATGAAGTTCTTCAACATCACAGACAGCGATCTCCCCAAACCCGTGAGGGCCAACTTCATCCTGAACGTGGAGAGCGAAGAGCTGTTCATCACGGCGGGGCTGCAGGACAGGGTGGTGCAGGTGTATGAAGGGCTTGTGTACATGGACTTCAGCAAGGCTTTGATGGATGACAAAGGCTACGGGGAGTACATACCCATGGATATGAGCTGCCTCCCCCCGCTCTGGCTGGCCTATCTGGGAGACCCCAGCGACTCGGGCCGGATCCACAGCGACGTGCGCCAACGCTGGCTCAACGGGGACCCTGACGTGGTGGAAGCCATGAAGTCCTTTGCTGAGCTCACAGACGGAGCCCGGGACGCGCTGCAGAGCAGAGACTGGGCCCGGCTGGCTGAGCTGATGGACCGCAACTTTGATCTGAGGAGgTCTGTCTATGGTGATGAGTGTCTGGGACAAGGCAATCTGAAGATGGTGCAGTTGGCCAAACAGTTTGGCTCTGCTGTGAAGTTGCCTGGCAGTGGAGGTGCCGTGCTCGGTCTGTGTCTGGATTCACACAAGCTGGTGGAGCTGAAGCAGGCTTTCCAGCAGGCCGGCTGCGTGTTCTGCCACATTGTGCCCTTCGATCCGTGCGGCGGCAGAGCGCAGGGGCCGGACTGA

Function

NR:

description
PREDICTED: glucuronokinase 1-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
K16190 GLCAK; glucuronokinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004558 True 1746 mRNA 0.60 22 53573530 53586212

Neighbor

gene id symbol gene type direction distance location
AMCG00004559 NA coding downstream 39693 53526868 ~ 53533837 (-)
AMCG00004557 NA coding downstream 275433 53297456 ~ 53298097 (-)
AMCG00004556 NA coding downstream 282791 53285294 ~ 53290739 (-)
AMCG00004550 NA coding downstream 370978 53196270 ~ 53202552 (-)
AMCG00004552 alg9,LOC107691744 coding downstream 395086 53164673 ~ 53178444 (-)
AMCG00004561 NA coding upstream 1063 53587275 ~ 53605416 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding upstream 21595 53607807 ~ 53611269 (-)
AMCG00004560 NA coding upstream 32210 53618422 ~ 53627882 (-)
AMCG00004569 tecta coding upstream 292063 53878275 ~ 53905023 (-)
AMCG00004572 NA coding upstream 324165 53910377 ~ 53928613 (-)
G9074 NA non-coding downstream 79820 53493495 ~ 53493710 (-)
G9048 NA non-coding downstream 288559 53281051 ~ 53284971 (-)
G9002 NA non-coding downstream 425556 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 468694 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 1019157 52553919 ~ 52554373 (-)
G9141 NA non-coding upstream 76172 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 107992 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 111164 53697376 ~ 53700585 (-)
G9149 NA non-coding upstream 135030 53721242 ~ 53722122 (-)
G9153 NA non-coding upstream 207866 53794078 ~ 53829780 (-)
AMCG00004551 NA other downstream 384137 53179022 ~ 53189393 (-)
G8937 NA other downstream 622143 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 661778 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 699422 52850483 ~ 52874108 (-)
G8761 NA other downstream 1501944 52068053 ~ 52071586 (-)
AMCG00004567 NA other upstream 100204 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 446422 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 770248 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 855559 54441771 ~ 54450341 (-)
G9414 NA other upstream 990428 54576640 ~ 54620055 (-)

Expression


Co-expression Network