AMCG00004559


Basic Information

Item Value
gene id AMCG00004559
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53526868 ~ 53533837 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004559
cagAAAGCCCTGGTGTCAACGGGGGGCAGGAGTGTGCAGGCCGCCTGTGACTGgcTGTTTTCTCACGTGGACGACCCGTTCTTGGATGACCCCCTCCCCCGGGAGTATGTGCTGTACCTGCGGCCCAGCGGGCCCCTGCTGCACCAGCTCTCCCACTTCTGGCAGCAGTCCCGGGTCACCTGTGGCAAGAACAAGGCCCACAACATCTTCCCCCATGTCACACTGTGCCAGTTCTTCATGtgtgcggACAGTAAGCTGGAGGCTCTGTGCGAGGCGCTGCAGTCCACGGTGTGTCAGTGGAGGGGCCGCTTCCCCAACCCCCTGCCCCTGGAGCTCTACACCTCCTCCAACTTCATCGGGCTgtcatcCCAGGCgtgctcttcctcctctttcttATCCCCTGACGCCCATGTGGAGCCGCACAAGAAGCAGCTGCACGTTACCCTGGCCTACCACTTCCAGACCAACCACCTCGCCGCCCTGGAGAAGTTGGCCAAGGGCATCGACGTCTCGCTGGGCTGCGATTGGTTGGCTGTGCTCTTCTCCCGCGACATCCGCTTCGCCAATCACGAGACGCTGCGCGTGATGTACCCCTACGCACCGCAGAACGAGGACGAGCTGGAGCTGGTGCCCGGGGACTTCATCTTCATGTCCCCGGTGGAGCAGTGCAGCACCAGCGAGGGCTGGGTGTACGGGACCTCACTCAGCACGGGGCTGTCCGGCTTACTGCCCGAAAACTACATCGTCCGCGCCGACGAGAGTGACACTTGGGTCTTTCACGGGTCCCACTCATTCCTGAACTGCGCCTCGCCCTCGGGTGCCGGGGGTGGCTTTGACGGACTGGACAGCCGACTGCTGGACGAGCCCGGCCCCGGGGAGCCCCCCTCCCTCAGCGTCATCTGTCCCCCCATGCAGGTCCTCAGGGTTAACAGCCAGTCTCGGCTGCCCAAGCGCAGCCTCTTTGTGTGTCGCCACGGCGAGAGGATGGACGTGGTGTTCGGCAAACACTGGCTGTCCCAGTGCTTCGATGTTAAAGGTCGGTACGTTCGCACAAACCTGAACATGCCGGCGAGCCTTCCAGTCAGAAGTGGAGGCTACCGGGACTACGACAAGGACGCCCCCATCACAGTGTTCGGCTCCACGCAGGCCCGCCTCGTGGGGCTGCAGCAGGAGGGCAAGATGAAGATCCGCGTGGAGCCGGGGCTTTTTGAGTGGACCAAGTGGGTGTCCGGCACCTCGCTGCCAGCCTGGATACCTGCCACCGATCTGGCTGCTGCCAATCTGAGTGTGGACACAACGTACAGACCTCATATTCCAGTCAGCAAGCTGGGCGTCTCTGAATCCTACGACACGTACATCAGCCGCAGTTTCCAGGTCACCAAGGAAATACTGTCCGATTGCCAAGGTAAAGGCTCCACAGAGTTCACCCGGCAGGTCAGACTGAGGATGGCCTATCTGTCAACTCTTGTCAACTCTCGTTCCTTTTATTCCCCTGTCTTGCAGATCCCCTACCTGGGTTTCTGTGCTTGTGAGGAACAGGGCGACACTGGCGTGTGGCAGCTGGTCGACCCCCCCATCCTGCCCCTGACCCATGGGCCCAACCATAGCTTCAACTGGAGGGAGACGCTGCTGCAGGAC

Function

GO: NA

KEGG:

id description
K18993 UBASH3, STS; ubiquitin-associated and SH3 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004559 True 1638 mRNA 0.62 12 53526868 53533837

Neighbor

gene id symbol gene type direction distance location
AMCG00004557 NA coding downstream 228771 53297456 ~ 53298097 (-)
AMCG00004556 NA coding downstream 236129 53285294 ~ 53290739 (-)
AMCG00004550 NA coding downstream 324316 53196270 ~ 53202552 (-)
AMCG00004552 alg9,LOC107691744 coding downstream 348424 53164673 ~ 53178444 (-)
AMCG00004553 NA coding downstream 364516 53151871 ~ 53162352 (-)
AMCG00004558 LOC102781260 coding upstream 39693 53573530 ~ 53586212 (-)
AMCG00004561 NA coding upstream 53438 53587275 ~ 53605416 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding upstream 73970 53607807 ~ 53611269 (-)
AMCG00004560 NA coding upstream 84585 53618422 ~ 53627882 (-)
AMCG00004569 tecta coding upstream 344438 53878275 ~ 53905023 (-)
G9074 NA non-coding downstream 33158 53493495 ~ 53493710 (-)
G9048 NA non-coding downstream 241897 53281051 ~ 53284971 (-)
G9002 NA non-coding downstream 378894 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 422032 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 972495 52553919 ~ 52554373 (-)
G9141 NA non-coding upstream 128547 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 160367 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 163539 53697376 ~ 53700585 (-)
G9149 NA non-coding upstream 187405 53721242 ~ 53722122 (-)
G9153 NA non-coding upstream 260241 53794078 ~ 53829780 (-)
AMCG00004551 NA other downstream 337475 53179022 ~ 53189393 (-)
G8937 NA other downstream 575481 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 615116 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 652760 52850483 ~ 52874108 (-)
G8761 NA other downstream 1455282 52068053 ~ 52071586 (-)
AMCG00004567 NA other upstream 152579 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 498797 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 822623 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 907934 54441771 ~ 54450341 (-)
G9414 NA other upstream 1042803 54576640 ~ 54620055 (-)

Expression


Co-expression Network