AMCG00004560


Basic Information

Item Value
gene id AMCG00004560
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53618422 ~ 53627882 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004560
CTATTGCAGAGTAGGGCTAGCCATGATCTAACTAGTACCTTAGGCTGGTAGTtgatgtgtgtgcgtgagagagagaaagaaattgaGCTGCAGGTAGAGACACACTATTCATAACATGTTAAAGAGTTGTAGTGAAGTGACCCTTTTGGACCACACTATCTGCCACATTGAAGAACTCCGGCTTAAATGAATGATCACTTCTACCTCTAATCAGCAATCATAGGATTCATTCATGGTCCTTAAATGCCAGGTTTGGGTTACACACTAATTTTCTGTCGTGGTCTATGCACTCCCTGAAGTAGCCATGGCCACCCCCTGGCCACTCCATGTATAAAACTTTAGTTCCGCCAGTGATTATTACTAGCTACTGACCTCTCACCTGACCTTACACTTCTCCTGCGCTCTGGGTCCAGCACCCCAGGTATTCCCAGTTATTACACTATAGCACTCTAATTTGTGTTGTGAtacaatgtatatgtttttcagATATGTGTCAATGTAAGTGTGTTGGGTTTGGCTCAGTGTCACTCTTCTCTGTGCAGTGTGGCAGTGCTGGTTCGAGTTGCCCAGGGGGGGTCTGTCTATGGGGAGAGTATGCTGCTCATCAGGGCTGTGCGATGGTAGCTCTATGAGTCGACCTGATTCAGGTCGGCAGAGAATTTGACTACTCTCTTCTGGATTGGGATAATTAATGGGAAAACTGGGGTGTTTCTGTTGACTTGCagaatgtttttacattttgtatttgtattcaggGTTGGTCCCCAGATCTCATTACTGAATTAttctattaaatatatctttaaccCAATTTTGATTGGGGCTTTGATGTCGGAGAATTTACTTTTTATGGCGTAGAATGAACTGCTTGCTTTTTCTTGTAGTTTTATTATAGCCAGTCTAGATGTATTTGATGTGTTGATTGTGAGACCCAGGTATGCGTAACTGGTGCAGTGCTCCAGGAGGCTATTCCCCAGAGTAAAGTGGTACCTGTGTCCCTTAGGTATGGATTTTTTCTGGAAGATCATAAGTTTTGTCTTGTCCAAATTTACTGTCAAGGCCCATGTCTGACAGTTCTTTAGAGTTTCCCAGAAGGAGTTTCAATAGAGTCTTCAATTTCATGTAGTTTGTGGGATATGCggtcttgtttctttttttgaagCAGGTTCTTGTCCTGTTGGACGGTCTGGCAGTAGCTTAGGCGTAGTTCCTGATTGTGgggctcattttgttttttattggacagctgtctgaagtctgaagtCTGAAGTCCAGCTGCACATTGGCTATCaaaccagatttatttttgtttgtgttttctatttgtacGTTTTGTGCGGCTTTTTCACAGGGTACTCTCACACGGCAATGCTTAGCCAAACACAATGCACTGCAGCTTGTCTTATCTTCTGACTGCTTGCTCAAGAGCCAGAACCACAAGCACACCACCAAGTCACAGCAGGTGGTGGggcctcctctcctcctcttcaaCCTCCAACCCCTGCACACATAACTGTTGATCTGAACTAATCTAAAGTTAGATTTAAGTTATTTCACAAACCACAAAGTCCCACCTACTGTCACTGATCTCATTTAGGTAACTGGGGCTGGAGTTGCTGGTGGGGCTCTCAGGTTGTAATTTTCCATTCCTACAACCGGTGGCGGTGGGTGCTAGAGTATTACACTCTGAAAGCAATGGAAAAGGACATGGGGAGGGGTTGGAGGGATACATGTATATGCATGATGGCGTTGTCTCTTCTACCGTATTTCATCCACCAGCGATGATATCAATCAGGGATTCTCCCTTGAGAGTGAGCTTCATGTCCACGCCCCCCCacgaacaaaaaataatcaattaaccaatcaagATGACAAAGTATGCCCAAGAATTCAGCAAGCATTTGTTGAATTGATTTGACTTGATCCAGCAGCAGcgagaataaaaaataaaaaataaatgaaagttgCAATTATCagagtaatttatttaaatgattttcagcTGGGAGGCCCCTCACACATGTTAggactgcagcagctgctttgtATCATTGGCATCTCCAGAAACCTTTTAATGGTGCTTAAGTCCAATTTATAGCCTGTGGGGacataaattaaacaagacGAGAGTGGATGTCTGTCTgcttgcaaaacaaacaagcaaacaacatCTGAGGTTTGGGCGAGGCTCCGTCAGATCTGTGGTGTATAATGCATCCTCGTCTGGTCTAGCTGTAGCACTTCACCACCCGCCACActgccagtctctctctccGAGCCGTGCGTAGTCCGTCCCCACCCTTCTCCAGCTGGACGCCTGTGGCAGAACCGGAGGGGGAAGCACAGAGACGAGACAAAACCAAGAGGCACATGAGGATGCATCCCCTTGGAACACTAGCTCTCCTAGCAGGGCTCTGTTTGGCTAAGCGAGAACACAACCACAACTTGCAGGGCCTCACCGTATGCATCGACAACCGGGACCTCATGATGAACTGTGTGCCCTGCTGCTCGACCTCCAACATCCACTGCTACTTCATGTTCAACGGCAAGCCGGTGGGCGGCACCAGTGGTGGACCCTGGCCGCCCCCCGAGATCCCAGCCCACATCTCCCGCACGAAAAACAACACATGCCTCCTGACGGTGGCAAACTGGACCGACAGCTATTCAGGGAACTACACCTGCCAGATCAGGCACAAATGGGTGGGGTTGGTGCAGAAAGATAATGAGTGGAAGAGACAGGCCAATGAGACAGTGGTGGTGAACCAGAACGTCACGCCCCATCCTTTGCGCTGTGCTAAACGAGATCACTTCACTCTCTCTGCTGCTCGTCTCGACACGCTGGGCAGTCCTGCTCCAGAGCACGGCCGATCAACGTCAATCCGAGCCAAGAGGATGTATCTCCCAGCCGCACTTGTCCTCCTCCTGTCAGTTCTCACTTCGGCCCAAGATGTGACTCATGTGACTGCGTGCACTACGAAGGAAAACAATCTGCAGATGTACTGCAAGTTCACCCCCGACGGCAATTCCACCATCAACTGCGACTTCCTGGAGAATGACAAGAAGATGGGTGGCACCCAACCTGGTTATAATGCAGATCCCACCTTCAAGAACCGCGTCAACGTCACCTTGCTGGCGTCAACCAAGGACACGTGTCGGCTTATCCTCACGGGCTTTGCTAAGGACAAGTCAAACAACTACACCTGCGAGATCACTCAGGGCAAGACAGCCTCCAAGGTTTTGGCTGTGAACGGCAAGAGTGTGGTCCCTTGCTCTGCGCTCAGTGTGCTGTTCCAAGCCCCTGCTCTGCTGATGCTGTCTGTGATGTCGCTTCCTgcgctgctgcagctgctctcTGTGTGACCAATCGGAGCGGCCGTGTGACCCCGTCGCCACGCAGCGGAGATTCTAGTGTCGGTGGTGAAATCATTTCTACCAATTTGGGGAGCTGTCACTGTAACGTGACATACCTTTGTAATTCCAAAAATAGTTGATTCAATGAATAACAAATGTCTGAACTAGAAATAGTAGTGGTGAGATGTTTGTTAACCTTTCCAAATTGGGGGGGTATAATTAGGGTTTTAAGGCTGGAATAGTATAGGGGAAATGggatctataatatatatatgtgtgtatgttcattgtttttcaaaactgatGTGGGTCTTTTGCTCTCCTGAATTGGATGTACACATCTCTGCACTGACTTTTGCCACTTTGCTAAATTCAAATCATTTGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004560 True 3738 mRNA 0.47 7 53618422 53627882

Neighbor

gene id symbol gene type direction distance location
AMCG00004562 usf1,LOC107657261,LOC107601709 coding downstream 7153 53607807 ~ 53611269 (-)
AMCG00004561 NA coding downstream 13006 53587275 ~ 53605416 (-)
AMCG00004558 LOC102781260 coding downstream 32210 53573530 ~ 53586212 (-)
AMCG00004559 NA coding downstream 84585 53526868 ~ 53533837 (-)
AMCG00004557 NA coding downstream 320325 53297456 ~ 53298097 (-)
AMCG00004569 tecta coding upstream 250393 53878275 ~ 53905023 (-)
AMCG00004572 NA coding upstream 282495 53910377 ~ 53928613 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding upstream 307862 53935744 ~ 53949364 (-)
AMCG00004573 NA coding upstream 336103 53963985 ~ 53965707 (-)
AMCG00004570 NA coding upstream 351863 53979745 ~ 53988395 (-)
G9074 NA non-coding downstream 124712 53493495 ~ 53493710 (-)
G9048 NA non-coding downstream 333451 53281051 ~ 53284971 (-)
G9002 NA non-coding downstream 470448 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 513586 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 1064049 52553919 ~ 52554373 (-)
G9141 NA non-coding upstream 34502 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 66322 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 69494 53697376 ~ 53700585 (-)
G9149 NA non-coding upstream 93360 53721242 ~ 53722122 (-)
G9153 NA non-coding upstream 166196 53794078 ~ 53829780 (-)
AMCG00004551 NA other downstream 429029 53179022 ~ 53189393 (-)
G8937 NA other downstream 667035 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 706670 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 744314 52850483 ~ 52874108 (-)
G8761 NA other downstream 1546836 52068053 ~ 52071586 (-)
AMCG00004567 NA other upstream 58534 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 404752 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 728578 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 813889 54441771 ~ 54450341 (-)
G9414 NA other upstream 948758 54576640 ~ 54620055 (-)

Expression


Co-expression Network