AMCG00004561


Basic Information

Item Value
gene id AMCG00004561
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53587275 ~ 53605416 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004561
atgtatgtagGGCGGGCCGTGCGGCTCCTCCAATCGCACCTGGCGGGCAGGTGCGCAACGCGGAAGGGCGGGGAGAGGAGGCGGAGGAGCCGGGAGCCGTGGAACCGAGGAGCCGATCCCTGCGCGGCTGTGCGCCCGTCTGCCTCTCCTGCGCTCGGCCGCGGTGAGCGCCGGCGGCTCTACCCCACCGTCACGCCGAGCTGTGATGCCCCTCGGTGTCTGTTGTTCCCCGTGTTTGGCGTTGCTTTCTGCGGGAAACGAGTCTTTTCCCCCGAACTCACTCGCACTGAGCGCCGTGCGGGGAACTTGCGGGAATTGCGCTCTCACGGGCGACGTTCCCGCAAAGCCTCCAGTTTTGCAGTCACCACCAACACACCCACGGTCACAGTGCCAGAGAACGCAGGAGCTGATCTGGCTTGCTCCTACTCGGCTGACTTTGGCATCCCGAGGATCGAGTGGATGTACATGGACAAATCCGGATCTGAGACATTGATTTTCTATGAAGGACAGCCCACATCGAAGTACACTGGCCGTGTTGAGCAATACCAAGGGGGACTGCGCTTTAACAAAGTGACTCGCCAAGACAACGGGAACTATACGTGTGCAGTCTACTCCTCAACTGGAGTGATTGGAAAATCTGTGATCAAACTGATTGTGCAAGTGGCCCCATCTCCCCCCATATGCGGGGTGCCCTCCTCGGTGACCACCGGAAGCAGGGTGGTACTGACCTGTTTTGACAAAGATGGCTCCCCCGATTGCACATACAAGTGGTTCAAGAACCAGGTCCCCATGCCCGTGGATCCCAGCAAGATCCCAGCCTTCCAAAACTCATCCTACGTCCTCAACCCCACTGACGGGACTCTGgttttCCCGAGGGTTGCAAAGACAGACGCTGGGCAGTATTACTGCACAGCCGCAAACGGGGTTGGTAGTCCTGCCAGCTGCGGCGCATTGCAGATGGCAGTCAATGATGTGAACACTGGTGGCATTGTTGCTGGGGTGATTGTGGCCTTGTTGGCCCTGGGTCTGTTGCTGTTCGCACTGTGGTACGCTAATCGCAAAGGATACCTTCCCAaaaaaagtGAAAGCAAACCCAAAGTGGTGTACAGCCAGCCGCCAGCTGGACTTGACCAGGAAGATGGCGAGTTCCGACAGAAGTCTTCCTTTGTGGTGTGATGCAGCCCGGGACTGGTCAGCCCCCTGTGTCGGCCCCCTTCCTGTAATACCCAGCACATGGAAAAAAGCATCAATATCTATGGAATACCTCTACGAATGTTTTTCCCCTATgcgttttatttcctttaaatgttacttttattttttaaatgtgtttttataccTCTCACTCTAAATAGAAGCTAGTTTTTCTGGATAgaacattacatgttttttttttttttaccagcacCAATCTGGtagggatttttttgttgttgaaacaCCCAATTCCATTGATAAGTTCCTCTttcatactgtgtgtgtataagtaGCGAATAAAATGAATACTAGTGACCTCGGTGCACTAGTCACTTCAGCCTGCTCCCTGCGTGTGAAGATCCAGGTGGGATCCAGTCACGTGAAATGACCCTCCTAATTGTGCACAAGGCCAGCATTTTCATCTGCACCCCGAGTCAACTAATCGCTTATGAACCGATGCtgtacaataacattaaaatttAAGAACTTCTAATATGTCTGTTTTGGAACTGCATGTGAAACCCTGGGATGTATCGTTGCTGTATAGATATATTGTACGTAATctttaatgttttgctttgtacatttaaagtgtttgtatgtttaaacCACTCAGATTACTTTTATGGGCGCTatataaaagtttattattGTACGTTTAAATGTTTCAAGGTTAGTTTGTGCTGTTTTCCTATCTCTCTTTTAGGGTTTATGACGGAGTGGGTGggtatgtttttggtttttgtaaCCTTCGCTTCAAGGTTTGTTTTCCTTGCTTCCCAGAATAAGAGAGGCCTACTAATGTAGTGCATGTTTAACACTGACCTCGTATACATTTGATATCAATTGTGCTGTATGACTGAAACATTTCGCAGCTTTTTcgtgtgtattttaatagaaaCGGTATGGTCGTGATTTGGTGGAAAACTGGATGAATACGACCATTACTCCTAATGTAACATGAGGGCTGTTTGGATGCAGGACAGCGAAACGTGTGAATCGTCTGTTCTTATTCTGTGGGagttgtgctttttaaatctgCAAACTTTAGAGCAGCGGCAGTCAagtgtaagcaaattattaattcGGCATACAGGTAGAACACACCTTGCTTGCACACTTTTTCAGTACTATACCCTCTATTGCAGTGgctctcaaccctggtcctagaacttgcaattacttaattacttcaattaagggttcaattgaGAAATTCAGAGCTAGTTTAGtacaaaaaacagcaggttaggggctcctccaggatgaGGGTTGAGAACCACCGATCTAGAGAGATTATTCTGCGAGGTGAATTAGTGTATTGATTTGAAAGGCTCTGGATCAGTGACCACTGTAACAAAACTGAACCGGTcatgttttttcagattttatttctacaaaCTACCTCTGCACAAATGAGCTTAGTAGTTggccatttcattttcagtttatgaATTGCACTATgaactataaataaatgaatatataaaataccaaAAATCTGAACTGGACAGTGGATTTGATTCGTAATTAGTTAGTAAACTGATCGTAATATCCAATTGCCTGGACTGGCATGATGTGCTTTTGAATCACCTATTTTTATGTGTACATAAAATTGATAGAAAATGCAATCGGTCTCCCAGGGTCTTGGATGCAAATCAATACTCTTTATTTGCCTATTTACTGTTCTTCACTGGTATATGAATGAGAAATGGTCATCAATCCCTTTTGTGACCTATGttttgctgtgcttttaaaaattatatatatgaaatgctgtactgttgtaaaaaaaaaataaactttttttttcttagtt

Function

GO: NA

KEGG:

id description
K06089 F11R, JAM1, CD321; junctional adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004561 True 3016 mRNA 0.45 12 53587275 53605416

Neighbor

gene id symbol gene type direction distance location
AMCG00004558 LOC102781260 coding downstream 1063 53573530 ~ 53586212 (-)
AMCG00004559 NA coding downstream 53438 53526868 ~ 53533837 (-)
AMCG00004557 NA coding downstream 289178 53297456 ~ 53298097 (-)
AMCG00004556 NA coding downstream 296536 53285294 ~ 53290739 (-)
AMCG00004550 NA coding downstream 384723 53196270 ~ 53202552 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding upstream 2391 53607807 ~ 53611269 (-)
AMCG00004560 NA coding upstream 13006 53618422 ~ 53627882 (-)
AMCG00004569 tecta coding upstream 272859 53878275 ~ 53905023 (-)
AMCG00004572 NA coding upstream 304961 53910377 ~ 53928613 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding upstream 330328 53935744 ~ 53949364 (-)
G9074 NA non-coding downstream 93565 53493495 ~ 53493710 (-)
G9048 NA non-coding downstream 302304 53281051 ~ 53284971 (-)
G9002 NA non-coding downstream 439301 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 482439 53101901 ~ 53104836 (-)
G8833 NA non-coding downstream 1032902 52553919 ~ 52554373 (-)
G9141 NA non-coding upstream 56968 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 88788 53694204 ~ 53695507 (-)
G9146 NA non-coding upstream 91960 53697376 ~ 53700585 (-)
G9149 NA non-coding upstream 115826 53721242 ~ 53722122 (-)
G9153 NA non-coding upstream 188662 53794078 ~ 53829780 (-)
AMCG00004551 NA other downstream 397882 53179022 ~ 53189393 (-)
G8937 NA other downstream 635888 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 675523 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 713167 52850483 ~ 52874108 (-)
G8761 NA other downstream 1515689 52068053 ~ 52071586 (-)
AMCG00004567 NA other upstream 81000 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 427218 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 751044 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 836355 54441771 ~ 54450341 (-)
G9414 NA other upstream 971224 54576640 ~ 54620055 (-)

Expression


Co-expression Network