AMCG00004567


Basic Information

Item Value
gene id AMCG00004567
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53686416 ~ 53863369 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004567
ATGCAGCAAATCAACAGTGAAGGTGTGGGCTTACCGTCAGGACATGGAGAGGTGTATTCAGACACGGCCTGCTCACCTACAAGACATAAGGACCACATAGTGAAGGACAGACAGGATGAATCCAGACAGGAGTTTGAAGTTCAGAATGACCATGTTGGTGTTGTCCCTCGGGCCGGCGTACCTGTTGGGTACGCCGGCCCGAGGGACAACACCAACATGGTCATTCTGAACTTCAAACTGCTGTCTGGATTCGTCCTTAAAGATACACAGATAAGAATTtatTCACGTCTCACATTAGTCCCCCTTACCTTGCCGCTGATTTCACAAGATCGGGTGAAGCGAATTGACAAAGAAGACGGCCATGTGATTCTGTATCTGGATGAGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGAGTAACATAGAGCAGCACAGCAGATGGGTAAAGATTACAGCTGGTTGGTCAAGGGAGCTCAGTAACACTTTGCAGTGTTCAAATCAGATCCTACCTGACTTGGTGCATCTTGCCATTGCAGTGAAATTAGGCAGGGTTCCCTTCAGGCTGCCTGTGGATTACACACTGGCTCCCATTGCCCAGATGCTGGTCTATACTGTGCTGCCAGGAGAGAAAGTCATAGCAGACAGCTTCAACTTCCAAGTGGAGAAGTGTTTGCCCAGTGAGGTGTCCCTCAAGTTCTCGTCCCCCGAGGTGCTCCCTGGAGGTCAGAGTGCCGTGACTCTCAGCTCTCAGCCCGGCTCTCTGTGCTCCCTCAAGGCCATCGATCAGagtgtgctgctgctggacaGGAAGAATGAGCTGACCATTGACTTGATCTACAAACTGCTGCCTGTCCAGAAGGGTGAAGAATTCCCCTATTCCTTAGAAGACCCCCGCAGCTGTGTGCTAGTGAGACAAAGAAGGTCATATTTCAGTAATCGAGAGAATCAACCAAAGGATGCTTATACAATTTTTAAGTTGTCAACAATACTATGCAAAGTCAACAGAGTAGAATATGCAGTGCCAATGCCGATGATAGGAAGCTCTGGCAGAAGACCGAAGGAGACAATTCGAACATTCTTCCCTGAGACATGGATCTGGGATTTGGTCCCAGTGAATGTGACTCCGGCCAAGTCCTCAGACTACACTCTGGAGCCCTGCAAAGGGTATGAGTACACTTCCTGTCTGTGTGCCAACGAAGCAAAGACCTTCCATTGGACTCTGGTGCCTTCAGCCCTTGgATCGGTGAACATATCAGTGAGTGCAGAAGCGATACACACCGAGACCATCTGTGAAAATGAGCTGGTGACTGTGCCTGAACAAGGCCACATTGACACCGTCATTCGCCCTCTGCTGGTAGAGCCTGAAGGGATGCAAAAGACCATCAGTTACAACTGGCTGTTGTGCCCAAAAGGGACCGTGGAGAAGGAGGAGGTCCAGTTGCAGCTCCCAGAAGTCATTGTGGAGGGATCTGCCCGAGCCTCCATCTCCGGTGGAGTGAGTGACGAGGTGACCCTGACTGCCTACATCGCTGCCGCCATGTTGGAACTGAACACCTCTGTGACGGAGCCCGTATTAAACAGCAGTCTGTCATGCCTGAGGGCTGCAATCCACAACCTGACCAACACTTACGCTGCTGCCCTGCTCGCCTACACCTTCACCCTGGCTGGGGAGGAGGACACCAGGGCCAGCCTTCTCGCCAAGCTGGATGTGCAGGACACCACTGAGGCTGACTCCCTGTCAGTAGAGATTAACTCCTATACTCTGCTGGCACTCCTCAGCCACCAACCCCTGTCCTCCTCTGACCTGGGCCGCGCCTCTAGGATCGTCAGCTGGCTGATCAAACAGCAGAATCCCTATGGAGGATTCTCTTCCACACAGAGCTCGAGCACAGTGACGGTGCGGTCAACAGGGGGAGAACACCACCACTTCACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTTCAGGACCTCCTGGGGGTGTACAGTGTGGAGGCAGAGGGCACAGGCTGTGCTTCGATCCAGATCGCTCTCCACTACAACATCCCCCCCCCTGCCGACTTTGTCAACTTCAACCTGACCTTGAAGGCTTATCGGCAATGCAACACTAGCAGCGATAACAGAGACCTCAGACTCTTAGCCAGCTTA
>TU11317
CAGGTACACATATGGGAAGCCAGTGTCTGGAAGAGCACAGATTGAATTATGCCCCATTCGACATTATTTTCTGGAAAGTGATTCAAGAAACTGCCTGTCTGTGTCAGCTGAAGTGGACAAGACTGGCTGCGTTTCTCACACTTTCAACATCACGTTGTTCAAGGACATATCATTCGATGACCTTGAATTCAAAGCTGAGGTCCAAGAAGATGAAACGGGTGTATCAATGAGCAAAACAACTTCCTTAACTTACACCAGAACAATGGGCAAAGTCAGTTTTGTGGACACACCCAAGTTCTATCAGAAGGGAGATGTGTTTGAAGGCAAGGTCAAGGCAGAGAGGGCAGATTCCTCGCCTTTAGTGAATGAGATGGTCTATGTGCTGGATTCTACATCTAGCCCATTTCAAATCATGCTGAATGTTACCACTGACAGCAAAGGGATCGCACACTTCTCTCTCAACACGTCCGACTGGACCTCAGAGACCATCAGTCTCATGGCCAGCTTCCAGAAAGTTGAGAGACCAAGATGGGATTCCCCACATGGTCCACATTATGAAAGCGAGACCCACACAGTCTCCCAGGTTGAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCTACTATGCTGTGACTGAGGTGGACCTACAGACTGACAAGAGATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCGAACATTCAT
>TU11319
ACAGAAATGACCTGTGACTTGTCATTGTTTTACAGGTACACATATGGGAAGCCAGTGTCTGGAAGAGTGCAGATTGAATTATGCCCCATTTCTAGACAACGTTATTTAAGGGAAAGAAACTGCCTGTCTGTGTCAACTGAAGTGGACAAGACTGGCTGCGTTTCTCACACTTTCAACATCACGTTGTTCAAGGACATATCATTCGATGACCTTGAATTCAAAGCTGAGGTCCAAGAAGATGAAACGGGTGTATCAATGAGCAAAACAACTTCCTTAACTTACACCAGAACAATGGGCAAAGTCAGTTTTGTGGACACACCCAAGTTCTATCAGAAGGGAGATGTGTTTGAAGGCAAGGTCAAGGCAGAGAGGGCAGATTCCTCGCCTTTAGTGAATGAGATGGTCTATGTGCTGGATTCTACATCTAGCCCATTTCAAATCATGCTGAATGTTACCACTGACAGCAAAGGGATCGCACACTTCTCTCTCAACACGTCCGACTGGACCTCAGAGACCATCAGTCTCATGGCCAGCTTCCAGAAAGTTGAGAGACCAAGATGGGATTCCCCACATGGTCCACATTATGAAAGCGAGACCCACACAGTCTCCCAGGTTGAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCTACTATGCTGTGACTGAGGTGGACCTACAGACTGACAAGAGATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCGAACATTCAT
>TU11321
TCATTTTCACCTTCAGTACATTGTAACTGCAAATAGGTTTATCAACGTTAGATCTGGAAACACAAAGTAGCTGACATAACTCTTTGCTTGGCCTGGAAGACAGTTTGTATTCTTGTTCTTTCTCTCAGGAGCCCGTATTAAACAGCAGTCTGTCATGCCTGAGGGCTGCAGTCCACAATCTGACCAACACTTATGCTGCTGCCCTGCTCGCCTACACCTTCACCCTGGCTGGGGAGGAGGACACCAGGGCCAGCCTTCTCGCCAAGCTGGATGTGCTGGACACCACTGAGGCTGACTCCCTGTCAGTAGAGATTAACTCCTATACTCTGCTGGCACTCCTCAGCCACCAACCCCTGTCCTCCTCTGACCTGGGCCGCGCCTCTAGGATCGTCAGCTGGCTGATCAAACAGCAGAATCCCTATGGAGGATTCTCTTCCACACAGgaCACAGTGGTAGCCCTGCAGGCCCTGTCTCTCTATGGGGCCGTGGCATTCAACAAAGAGAGCTCGAGCACAGTGACGGTGCGGTCAACAGGGGGAGAACACCACCACTTCACCTTGGACCAAAGCAACAGCCTGCTGTACCAGGAGAAGGAGCTTCAGGACCTCCTGGGGGTGTACAGTGTGGAGGCAGAGGGCACAGGCTGTGCTTCGATCCAGATCGCTCTCCACTACAACATCCCCCCCCCTGCCGACTTTGTCAACTTCAACCTGACCTTGAAGGCTTATCGGCAATGCAACACTAGCAGCGATAACAGAGACCTCAGACTCTTAGCCAGCTTAATGTAAGTCCATTTCTCTCAACATCATTCTTGTGTTTGTTAATGGTCC
>TU11322
NNNTCGCACACTTCTCTCTCAACACGTCCGACTGGACCTCAGAGACCATCAGTCTCAGGGCCAGCTTCCAGAAAGTTGAGAGACCAAGATGGGATTCCCCACATGGTCCACATTATGAAAGCGAGACCCACACAGTCTCCCAGGTTGAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCTACTATGCTGTGACTGAGGTGGACCTACAGACTGACAAGAGATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCGAACATTCAT
>TU11324
AGAACAACGGGCAAAGTCAGTTTTGTGGACACACCCAAGTTCTATCAGAAGGGAAATGTGTTTGAAGGCAAGGTCAAGGCAGAGAGGGCAGATTCCTCGCCTTTAGTGAATGAGATGGTCTATGTGCTGGATTCTACATCTAGCCCATTTCAAATCATGCTGAATGTTACCACTGACAGCAAAGGGATCGCACACTTCTCTCTCAACACGTCCGACTGGACCTCAGAGACCATCAGTCTCATGGCCAGCTTCCAGAAAGTTGAGAGACCAAGATGGGATTCCCCACATGGTCCACATTATGAAAGCGAGACCCACACAGTCTCCCAGGTTGAGAAGCCACATGGCAGCTACCTCTCCATCGAGGGCACTGACACGAGCCTCCCATGTGGGGAGGAAGCTTTAATCAGCATCTACTATGCTGTGACTGAGGTGGACCTACAGACTGACAAGAGATCTCTTGATCTGTTCATCCTGATTCTAGCCAAAGGGGCCATTTCCTTGTATGAGCACATGAAGGTGGATCTTCCCGAACATTCAT
>TU11341
GGAAACTGTATTGACATGGAATGAGCCATTTCAGAGATGCCTACCTATGCCAGAGAGCTGTTAATGATTGTTATTCTGACCTAACAGGTACGCCGGCCCGAGGGACAACACCAACATGGTCATTCTGAACTTCAAACTGCTGTCTGGATTCGTCCTTAAAGATACACAGATAAGAATTtttcagtatTCACGTCTCACATTAGTCCCCCTTACCTTGCCGCTGATTTCACAAGATCGGGTGAAGCGAATTGACAAAGAAGACGGCCATGTGATTCTGTATCTGGATGAGCTCACAAGGGGAAAAACTTACCACTATCACATCACCATGACCCAGAAGCACCCAGTGAA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004567 True 2169 mRNA 0.52 18 53796818 53830893
TU11317 False 794 TUCP 0.47 6 53686416 53689999
TU11319 False 823 TUCP 0.51 6 53686416 53822222
TU11321 False 830 lncRNA 0.47 4 53796770 53863369
TU11322 False 354 lncRNA 0.51 3 53686416 53774852
TU11324 False 538 TUCP 0.38 4 53686416 53856565
TU11341 False 348 lncRNA 0.45 3 53823311 53824486

Neighbor

gene id symbol gene type direction distance location
AMCG00004560 NA coding downstream 58534 53618422 ~ 53627882 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding downstream 75147 53607807 ~ 53611269 (-)
AMCG00004561 NA coding downstream 81000 53587275 ~ 53605416 (-)
AMCG00004558 LOC102781260 coding downstream 100204 53573530 ~ 53586212 (-)
AMCG00004559 NA coding downstream 152579 53526868 ~ 53533837 (-)
AMCG00004569 tecta coding upstream 14906 53878275 ~ 53905023 (-)
AMCG00004572 NA coding upstream 47008 53910377 ~ 53928613 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding upstream 72375 53935744 ~ 53949364 (-)
AMCG00004573 NA coding upstream 100616 53963985 ~ 53965707 (-)
AMCG00004570 NA coding upstream 116376 53979745 ~ 53988395 (-)
G9141 NA non-coding downstream 23170 53662384 ~ 53663246 (-)
G9074 NA non-coding downstream 192706 53493495 ~ 53493710 (-)
G9048 NA non-coding downstream 401445 53281051 ~ 53284971 (-)
G9002 NA non-coding downstream 538442 53147765 ~ 53147974 (-)
G8981 NA non-coding downstream 581580 53101901 ~ 53104836 (-)
G9161 NA non-coding upstream 1582 53864951 ~ 53865675 (-)
G9217 NA non-coding upstream 223206 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 342184 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 395194 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 785682 54649051 ~ 54676988 (-)
AMCG00004551 NA other downstream 497023 53179022 ~ 53189393 (-)
G8937 NA other downstream 735029 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 774664 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 812308 52850483 ~ 52874108 (-)
G8761 NA other downstream 1614830 52068053 ~ 52071586 (-)
AMCG00004575 NA other upstream 169265 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 493091 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 578402 54441771 ~ 54450341 (-)
G9414 NA other upstream 713271 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 1052215 54915584 ~ 54919938 (-)

Expression


Co-expression Network