AMCG00004569 (tecta)


Basic Information

Item Value
gene id AMCG00004569
gene name tecta
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53878275 ~ 53905023 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004569
ATGCACTGTGCCCCATGGCGTGCTAGCCAGGGCAGCGTCGGGGGCTTCCTTTCCAGTCGCCCCATGACACTGTACCTTAAATCTGCAGGCATAGGGGAGCAGAAAGGAGGTGGAATTGGGCTTTCCAAATTTCCTGCGGTGTTCGAGCATCGCTATAGGGCCAAACTGCAGACCTGCTCACAGGCCCCGTTCCAGACAATCCAGAAAGTGTGGAGTGAGGGTGCACTGTGGCTGGACCCAGGCCTGGCCCAGAGTATCCTGTACCCCTTCGGCCCAGGGTCCCGGGACTCTGAGACCCCCAAGATGGACGACGGCAGCTCGGCCGAGGTACCCCTCCTCATTCAGGTCATCTTCTTCAACATGCCCTACCGCTCCATCTTTGTCAACAACAACGGGGTGATCTCCTTCAACGTGCAGGTGAGCCAGTTCACCCCGGAGGCCTTCCCCCTGACTGACAGCCGGTCCTTCATTGCCCCCTTCTGGGCCGACGTGCACAATGGCATCCGGGGTGACGTCTACTACCGCGAGAGCACCGAGCCCGCCATCTTGCAGCGGGCCACCCAGGACATCCGCAAGTACTACAAGAACATGGGCAGCTTCTCTGCTACCTGGGTCTTCATCGCTACCTGGCACCAGGTCACCTTCTACGGGGGCAGCCAGACCACCCCGGTGAACACTTTCCAGGCTGTCATTATCTCCAATGGCGTGTCATTCTTTGCCATGTTCAATTACGGGGACATCTCCTGGACCACGGGCACTGCCAGTGGGGGGGACCCACTCACCGGGCTGGGGGGCACTGCAGCACAGTCAGGTTTTAATGGTGGGGATGTCAACCACTTCTTCAACCTGCCAGGCTCTCGCTCCAACGAGATTGTGAACATCGAGCAGACCACCAACGTCAATCAGCCCGGCCGCTGGCTCTTCCGCATAGATGGAGAGCAGATTGACCCAGCCAATGGCTGCAGCCTCAACGGGCGGTTCTACCGGCGTGGTGAGGTGTTCTGGCTATCGGACCAGTGCTCCCAGAAGTGCCGCTGCCTGGACCTGGAGAATGAGATCATGTGCCAGGAGGTGCCATGCGGGCCGCTGGAGAACTGCGAGTTGCAGGAGGGGGCGTTCCACTGCCAGCCCACACGCACCAGCACCTGCGTGGTGTTTGGCGACCCGCACTACCACACCTTCGATGGCTTCCTCTACCACTTCCAGGGCACCTGCTCCTACCTGCTGGCTCGGCCCTGCTGGGACTTGCCTGGCGTGCCCACCTTCAGCGTAGAGGCCAAGAACGAGAACCGCGTGGGCACCTCTGTGTCCTGGCTGCGGGACGTGCGGGTGGAGGTGTACGGGCACCGCATCACACTGCCCAAGGGCAGCATGGGCACTGTGCAGGTGGATGGGCTGGTGAAGACCCTGccagtgcagctgcagctggGCGCAGTGCGGGTGTACCAGTCAGGGGTGGCAGTGGCCTTGGAGACAGACTTCGGGCTGCTGGTGACGTATGATGGGCAGCACTACGCCTCAATCTCGCTGCCCAGCTCCTACTTCAACAATACCTGCGGCCTCTGCGGCAACTACAACGATGACCCTGCCGATGACCCCGCTCTGCCTGACGGCTCCCTGGCTGAAAGCGTGGTGGAGCTGGGTGGCGGCTGGCAGGTGGAAGATGCCGACTGGCGCTGCTCGGATGGTTGCGCCCAGAACTGCAGCCTCTGCGACGCTGCCACAGAGTCCTTCTACTTCCGTCCCGACTACTGCGGCATCATCAACAAGACGGATGGGCCCTTCCGGGACTGCCGGACTGTGGTGGATCCCACCGCCTTTGTGTACAGCTGCGTCTACGACATGTGCAGCAACCGTGACAATATCACCACCCTCTGTCAAGCCATCCAAGCCTACGCGCTCGCCTGCCAGGCCCTGGGAGTCACCATTCGCTCCTGGAGGTCACGCACCTTCTGCGCTCTGTCCTGCCCGGAGTTTAGCCGCTATCAGGTGTGCACCAGCAGCTGCCCCCCATCCTGCTCTGACCTGACATCCCATCTGTACTGCGCCCACCCTTGCACCGAGGGCTGCCAGTGCGACGAGGGCTACTTGCTGAGTGGCAGCCGCTGCGTGCCCCTGGCAGACTGCGGTTGTGAGCAGGATGGGGTCTACCACCCCTTGAACGAGACCTTCTGGACGGGGTTGGCGGCGGGAGAGTGTGCCCAGCGCTGCGTGTGCGAGCCACAGGGAGAGATCTCCTGCTTCAATGAAACGTGTGGCGATGGTGAGGTGTGCACAGCTGAGCTGGGCCGCCTGGGATGCTACCCGCGGCGGGAGGGCGTCTGCTCTGTGGCCCAGAGCCAGGTCCTGGCCACCTTTGATGGAGCCACCCTCCCCATCCCTGATGAGAATTCCTACTACCTGCTCAAGCCTTGTGGTGGCAGCGGGGCTATCAATGTGTCTGCGCCCGAAGTGAAGATTGGACGTCGGCTCGGCAACAAGGGCCCCTTATGGGTCAGGCCTGTGGTGGCCCAGCTGCTCGATCTGGAGGTGCAGCTGGGTGGCTCTGACTTTGACACCATTAAGctgAACGGAGATGCAGTGGGATTGCCCTATGTCCACCCCCTGGACACACTGCTCATCTACCGTGCCCCAGGCAATGCGACAGTATTGGAGTGGAGCGGGCTGCTGACAGTGCGTTACACACGGCAGGGCCTGCTCAATGTTACGCTCTCCACCCACTTCTACAATGCCACCTGTGGCCTGTGCGGCTACTTCAATGGCAACGCCTCCGACGAGCTGCGGCTGCCCAGCGGCAAGCTGACAGACAACACCGAACTGTTCGCTGAGGGATGGCGGGCCATCGCTGATGACCTGACCTGCAATGGGGACTGCGATGATCTGTATCGCATGTGCGTGGACCTGCGGCTCTACCAAAGCTCCTGGCTCTGCGGCACCATCAACGACCCCACCAACAGCTCCTTCCTGGGCTGCCACGCCGCCGTCAACCCCTCACCCTTCTTCCGCAACTGCCTCTACAACATGTGCGTCCGTGAGGGCAATCGGTCCGCCCTCTGCTCATCCCTGCAGGCCTATGCATCAGCCTGCCAGGATGCCCAGGTCAGCCTGGGGCCCTGGAGAAGTGCCACCAGCTGTCCTCTCCCCTGCCCGGAGAACAGCCACTTTGAGGAGTGCACTAGCGCCTGCCCCCTGACCTGTGCCACCCTGGAGGCAGAAGGGCCTTGCCCGCTGCCCTGCTTCGAGGGCTGCCAGTGCGATGAGGGCTATGCATTGAAGCATGGCCAGTGCATCCCCAAGATGGACTGTGGCTGCCAGTACCGGGGCCAGCAGCTCGGCACCAATGAGACCTTCTGGGTGGACTTGGAGTGCCAGGAGCGCTGCTACTGCAATGGCACTGACAATGCTGTGTACTGCACCATTGCCCCCTGCAGGCCGGAGGAGTACTGCTTGGAGGACAGCGGCCTGTACTTCTGTCAGCCCCGCACGGAGGCTGTGTGCATCACTGCAGGCTATGGCCACTTCCTGTCCTTCGGAGGAGCGACTTTCGACCTACAGAGCAGCTGCACCCTCCACCTCGCCACCACActgtgtgggagggagggggagggcaaCAGGGATGAGGAAGAGCCGAGGGAGGCTGAGGACAGTCTGCCCCAGTTTCGCCTGTCTGTGCGCAGCGAGGAACGGGATACAGGCCAAGCCATTTGGGTTAAGGGCTTCGTCCTGGAGGTGTATAACTATGAGATTGAAGTGTCGCGCAGCTACAAGCACACTGTAACGGTGAACAAGGAACGTCTATACCTTCCTCTCAAGCTAGGGCCGGGGAAGGTCAACATCTTCTCGTTTGGGCTGCAGCTGGTGGTGGAGACGGACTTTGGGCTGAAGGTGGCTTTCGATTGGAAGACTGCCCTGTCTCTGACCCTGCCACGCGACCTCTACAATGCCACCTGCGGACTGTGCCAGGGTCTGCCCCCCAGGCCCCCTACCCTGAGCGTCAGCGAGTGGGGCATGAGCTGGGCAGAACGGGACACCTTCTGCCGGGTGGGCTGCGGGGACGCGTGCCCCCGCTGTGGCCGGGGGGAGGCGGGGGCGACAGGGGACAACGGGCTGGACGACAATGGCAACTCCAATGGCAACGGGAATGGCAATAACTACAATGGAAACAGTAACAAACTCCATGCTGGTGAAGCATTCAATGGCTATCTGGACCCCGAGGCCCTGCGTCTGTGTGGGCTGATCCCTGATCGGGGTGGGGCATTCTCTCGCTGCCACAGCAAAGTGCCGCCCAACTACTTCTACCAGAACTGCCTGCAGGACAGCTGCGTGGACCAGGGCTCCCTGGACACCGTCTGCAATTGGCTGCAGATATATGCCAGCACCTGCCAGACCCAGGGCATccctgtgattggctggagGAATGCCACACCCTGTGTCCTGAGCTGCCCCGTCAATAGCCACTATGAGAACTGCATGACAGCGTGCCAGCCACAGTGTGCCCCTGCCCGTGGGCCGCGCGACTGCAACCACTACTGTGTTGAGGGTTGCCAGTGCGACCAGGGCTTTGTCATCAACGGCAAGAGCTGCATCCTGTCCCAGAATTGTGGCTGCTATACCGACGGGAAATACTATGAGCCCAAGCAGCTGTTCTGGAACGGGGATTGCTCGAAGCGTTGCCAGTGCATCGGGCGCAACCTGATCCAGTGCGACCCGCGCCGCTGCAAGTCAGAGGAGGAGTGTGCGCTCAGGCATGGAGTAAGGGGCTGCTTCCCCCGGCGCAGTCAGCACTGCGTGGCCTCGGGGGGGGGTGTCTTCCGCACCTTCGACGGGGCCACCCTGCGCCTGCCAGCAGCCTGCTCCTTTGTCCTGTCCACCATCTGCCACAAGTTGCCCGAGCTCTCCTTCCAGCTCATCGCCAACTTTGACAAGTGGAGCACGCCCAACCTCACCACCATCTCCCACGTCTACCTCTACATCAACGAGGAGAACATCCTCATCTCGGGCAACACCGTCAAGGTGAATGGCACCCCGGTGTCCGTGCCCTTTGTCACAGGGCTGATGACCCGCGTGTCCAGCTCCGAGGGCTTCCTGGTGATCGACACTGTGCAGGACATCCAGGTGCGCTACAACCGCTTCAACACACTGCGCATCAGCATGGGCCCCCGGCTGAACAACAAGGTGTGTGGCCTCTGCGGCAACTACAACGGAGACCCCACCGACGACTACATTACCTCACGTGGCAAGCCGGCTGTCAGCGCCCTGGAGCTGGCGCAGAGCTGGAAGACCAACGGCATGCAGAACAGCTGTGACGAGATGCAGTATGTGGCGCTGGCGCAGTCCTGTGACAACACAGCAGTTTTGATGCTGCAGGGTGAGGGGGACTGCCTGAAGCTCACCCAGATGAAGGGCTTTTTCCAGCCCTGCCACGGCCTGCTGGATCCCCGGCCCTTCTACGAGTCCTGCTACCTGGACGGATGCTACAATCAGCGCAAGGCCCAGGTGTGCGGCTCCCTGGCTGCTTACGCGGAGGCCTGCCGCTCCTTTGGCACTCTCAGCACCAAGTGGATCACCCAGGAGAACTGCTCAGAATGGATCTACGACCCGTGTATGGGAGAGGTCTGCACCAACAACACCTGTGAGCAGGAGAACGGGGGGGACCTGTGCGGCTGCCCGGAGCTGCAGGACACCGGAAACGGAGATGATGACATAATCCAGGCCGAGGTCATGTGTAAGCACTCCCAGATGGAGGTGTTCATCTCCAAGTGCAAGCTCTTCCAGCTGGGCTTCGAGCGGGAGGACGTGCGCATCAACGACCAGCACTGCTCTGGCATTGAGGGAGAGGACTTCATCTCCTTCCAGATCAACAACACCAAGGGCCACTGTGGATCCATTGTGCAGTCCAATGGCACCCACATCATGTACAAGAACACAGTGTGGATTGAGAGTGTCAACAACACGGGCAACCTCATCACCCGTGACAAGACCATCAACGTGGAGTTCTCCTGCGCCTACGAGCTCGACATCAAGATCTCCCTGGAGACCGTGGTCAAGCCCATGCTCAGtgtgaTCAACCTCACCCTGCCCACTCAAGAGGGCAGCTTCATCACCAAGATGGCGCTGTACAAGAACAGCTCATACCGACAGCCCTACCGCGAGGGCGAAGTGGTGCTGAGCACACGGGACGTCCTGTTTGTGGGTGTGTTCGTGGAGGGGGCCGACCAACACCAGCTCATCCTCATTGTCAACATGTGCTGGGCCACGCCCTCCCGCCACAGCAGTGACCGACTCCGCTACATCATCATTGAGAGGGGgTGTCCCAACATCAAAGACAACACCATTGGGATGGAGGAGAATGGAGTGTCCCTCACCTGCCGCTTCCACGTCACCGTCTTCAAGTTCATTGGTGATTACGACGAGAACTGCCCCCACAACACCAGGATGTACTCCGGGTACGGCAGTGACCACAAAGAGCAGATCCTGACTGTGGGGCCCATCCGCAGGAGAGAGTTGGACTGGTGTGAGGAGAACAACGGAGGGTGCGAGCAGATCTGTACAAGCCAGTTCTCCGGTCcagtgtgcagctgtgtgaCGGGCATGCTGCAGCGCGATGGGAAGAGCTGTCTGGCTACCGGCTCCAGCGGTGACCTCCGACCTATGGCCTTCATCTTGGTTTCCGGTGTGCTGGGTGGCTGGCTGCTGGTGCACACTCAAGCCTGCATGTCCTAA

Function

symbol description
tecta Predicted to be an extracellular matrix structural constituent. Acts upstream of or within otolith tethering. Predicted to be located in collagen-containing extracellular matrix. Is expressed in inner ear and otic vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 12; autosomal recessive nonsyndromic deafness 21; and sensorineural hearing loss. Orthologous to human TECTA (tectorin alpha).

NR:

description
PREDICTED: alpha-tectorin

GO: NA

KEGG:

id description
K18273 TECTA; alpha-tectorin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004569 True 6723 mRNA 0.61 24 53878275 53905023

Neighbor

gene id symbol gene type direction distance location
AMCG00004560 NA coding downstream 250393 53618422 ~ 53627882 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding downstream 267006 53607807 ~ 53611269 (-)
AMCG00004561 NA coding downstream 272859 53587275 ~ 53605416 (-)
AMCG00004558 LOC102781260 coding downstream 292063 53573530 ~ 53586212 (-)
AMCG00004559 NA coding downstream 344438 53526868 ~ 53533837 (-)
AMCG00004572 NA coding upstream 5354 53910377 ~ 53928613 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding upstream 30721 53935744 ~ 53949364 (-)
AMCG00004573 NA coding upstream 58962 53963985 ~ 53965707 (-)
AMCG00004570 NA coding upstream 74722 53979745 ~ 53988395 (-)
AMCG00004574 ddx6 coding upstream 87428 53992451 ~ 54004550 (-)
G9161 NA non-coding downstream 12600 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 48495 53794078 ~ 53829780 (-)
G9149 NA non-coding downstream 156153 53721242 ~ 53722122 (-)
G9146 NA non-coding downstream 177690 53697376 ~ 53700585 (-)
G9145 NA non-coding downstream 182768 53694204 ~ 53695507 (-)
G9217 NA non-coding upstream 181552 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 300530 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 353540 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 744028 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 772641 54677664 ~ 54677917 (-)
AMCG00004567 NA other downstream 14906 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 688882 53179022 ~ 53189393 (-)
G8937 NA other downstream 926888 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 966523 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 1004167 52850483 ~ 52874108 (-)
AMCG00004575 NA other upstream 127611 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 451437 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 536748 54441771 ~ 54450341 (-)
G9414 NA other upstream 671617 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 1010561 54915584 ~ 54919938 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031570 tecta coding NC_007116.7 CM002889.2 63177355 ~ 63233216 (-)
grasscarp (Ctenopharyngodon idella) CI01000080_02947705_02968518 TECTA coding CI01000080 null 2947705 ~ 2969289 (+)