AMCG00004570


Basic Information

Item Value
gene id AMCG00004570
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53979745 ~ 53988395 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004570
TCATAATTAATACATGGATGACGCTCCAAATGCTTGGACGCTGAACCGGAGATAGAGGGAACGatcgttttgtttttatagctgTTGGGACTGGCCTGCCGATATGGACCTGGTTGTAATCTGGACCTGCCTCGTCCTGTTCCCTGTGCTCAGGTGTGCTCTCCCACCACCTTGCGACAGTGAGGTGTACTGCCAGGGGGAGCTGCTGAGGCAGGTGCAGGAGGCCAAGCTGTTTGCGGATGACAAGCACTTTGTGGACATGAAGCTGAAAGAGCCCCCAGGGAAAGTTCTGGAAGCTTTCCGGAACCTAACATCCACGgtcCGAGCTGAAGTCCAGGACCGCCCTGAGCTCTACTCCCTGATCTACACCCCCCATCCTCTTATTGTCCCCGGGGGCCGCTTCAGAGAGCTCTACTACTGGGACTCCTACTGGGTGATCAACGGACTGTTGCTGTCGGAGATGAAGGACACGGCGCGGGGCATGATCAGCAACTTCCTGTACCTCGTGGAAAGGTATGGCTTTGTGCCCAATGGAGCCCGTGTGTACTATGAGCGCCGCAGCCAGCCGCCCTTCCTCACCCTGATGGTGGAGAGCTACTACCAGGCCACCCAAGACAAGAGCTTCCTGAGCTTTGCGCTGCCCTTGCTGGAGAAGGAGTATCAATTCTGGATGGAGAACCGCTCCGTCGTCGTGCAGAGCGCTGGGATCAGTCACACTCTGAACCGCTACAGGGTGGAGGCGGGCCAGCCCAGGCCCGAGTCCTACACTGATGACCTGGAGCTGGCTCAGGGGCTGTCCAAAGATGCCCAGGAGAGGCTGTGGGCGGAGCTGAAGGCGGGGGCAGAGTCGGGCTGGGATTTCACCTCGCGCTGGTACATGGCCGAGGGGGGCAGGGGTAGTGGGGGGGCTCTGAGCGACACCCGGACCAGCCACATACTGCCCGTCGACCTCAACGCCCTGCTGTGCCGGAACGAGAGGACACTAGCCTTCTTCTACAAGGAACTGGGCGGTGCTGTGGGACGAGGAGACGGCCTGCTCTCCAACACCAGCCGCCCCGGCTTCTACCCCTCCAACCTGGCCCCTCTGTGGGCACAGTGCTACGCCGAGCCGGGCGCCGGCGAGCGGGCGCTGGAATACCTGCAGGCCAGCGGTGCCCTGAAGTACCCCAATGGAGTGCCCACGTCTCTGTCGGATAGTGGGCAGCAGTGGGACTACCCCAATGCCTGGCCTCCCCTGCAGCACATGATCATAGAGGGTCTGTCCAAGCTGAGCTCAGAGAGTGCTCAGCAGATTGCCCTCGACCTGTCTCAGAAATGGATCCAGACCAACAGGAAGGCCTACAAGACATACCAGGCCATGTTTGAGAAgtatgATGTGAATGGAGATGGCAAGCCAGGAGGAGGTGGGGAGTATGAGGTTCAGCTGGGCTTCGGCTGGACCAATGGGGTGGCCCTGCAGCTCCTGGACCGGTTTGGGGATAGACTGTCATCGGGGGCCACTGCGGTCCTGGGCTCTGGGCTGGGGGTGTGGCTTCTGAGCACCCTGCTGGTCATGTTATGAACTGCAGCCCTGGGCACCACTGACACCCTGCTGGCCTCTCGCTGTGAATTGAAATGACTCTTCCCAGTCACTATACAAGACTTGCCCAATCAGAAATAACTAAGGCAGTTGATGTCCCCTATGAACCCTGTGATGATTGAGTTGCCCTTTTGTGATTAAGTTGTGATTAGAATGCAATTAAACTACTTTTGGTAAAGTCTTCAgctgtgcaataaaataatattttaacaacagGCATGTCAGCCACCCTTGAGGTCTATCGGCTAATCTtgtgtgcattaaaataaatgaattaatgacaAATAGGGCGAGGGGAGGGACACTGTATGTCATATACATGTTTCAAGGCACAGCTGTGAATATATAACAGACATGAAACATTTTGTGTGGTTGATGCGTCCGGCTGTATCTGTTACGATTCACGCCAGGAGTCTGCAGTTTAAATCAGTTTGCTGCAGTCCATTCATCCCTCCACTAGAGGTCCCCAGCCGCCTATACCTGTTTGACCTCTTTTGGGGAACGTCAATACCGTATTACCTAGTAAATAAACGGGTTTCTG

Function

GO: NA

KEGG:

id description
K01194 TREH, treA, treF; alpha,alpha-trehalase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004570 True 2120 mRNA 0.56 15 53979745 53988395

Neighbor

gene id symbol gene type direction distance location
AMCG00004573 NA coding downstream 14038 53963985 ~ 53965707 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding downstream 30381 53935744 ~ 53949364 (-)
AMCG00004572 NA coding downstream 51132 53910377 ~ 53928613 (-)
AMCG00004569 tecta coding downstream 74722 53878275 ~ 53905023 (-)
AMCG00004560 NA coding downstream 351863 53618422 ~ 53627882 (-)
AMCG00004574 ddx6 coding upstream 4056 53992451 ~ 54004550 (-)
AMCG00004579 NA coding upstream 116666 54105061 ~ 54122487 (-)
AMCG00004581 NA coding upstream 206953 54195348 ~ 54204995 (-)
AMCG00004582 NA coding upstream 217685 54206080 ~ 54219868 (-)
AMCG00004583 NA coding upstream 235408 54223803 ~ 54226053 (-)
G9161 NA non-coding downstream 114070 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 149965 53794078 ~ 53829780 (-)
G9149 NA non-coding downstream 257623 53721242 ~ 53722122 (-)
G9146 NA non-coding downstream 279160 53697376 ~ 53700585 (-)
G9145 NA non-coding downstream 284238 53694204 ~ 53695507 (-)
G9217 NA non-coding upstream 98180 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 217158 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 270168 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 660656 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 689269 54677664 ~ 54677917 (-)
AMCG00004567 NA other downstream 116376 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 790352 53179022 ~ 53189393 (-)
G8937 NA other downstream 1028358 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 1067993 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 1105637 52850483 ~ 52874108 (-)
AMCG00004575 NA other upstream 44239 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 368065 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 453376 54441771 ~ 54450341 (-)
G9414 NA other upstream 588245 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 927189 54915584 ~ 54919938 (-)

Expression


Co-expression Network