AMCG00004571 (LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023)


Basic Information

Item Value
gene id AMCG00004571
gene name LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53935744 ~ 53949364 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004571
ATGCCCAGCATGCGGCAGTCCTACACGGTGACGGTGCCCGAGGACCCCCCGTCCGCCGGCTTCCCGTTCCTCAAGCAGGAGATGCGGCGCAAGACCACGGCGGTGTCCGGCTCGGTTCTGGTGTCGACCTTCGTGGGGCTGCTCATTAATCAGGCCAAGGTAAGAGCGCCCGCCGGCGGGATCTCCAGTCCGCACGCCGATAAGCGCTCCTCCGGACACGTTTATGTAACGGGGGCTTTTAGTGCTTCAACTCTTAATGCAGCGCATGTAATCCGCACCAACTCCAAGACTGCGCAGGGTCTGGTGGGACTGCGGAACCTGGGCAACACAtgCTTCATGAACTCCATTCTGCAGTGTCTCAGTAATACTCAGCAGCTGCGGGACTACTGCATACAGAACTCGCACCGCAGAGACCTCCACAACAACACCCGCGTGCACACCGCACTCATGGAAGAGTTTGCCAAGCTGATCCAGACGCTCTGGAGCTCGTCGGGCAGCGAGGCCGTCAGCCCCTCGGAGTTCAAGACCCAGATTCAGAAATACGCCCCCCGGTTCGTGGGATACAACCAACAGGACGCTCAGGAGTTCCTGCGGTTCCTGCTGGATGGGCTGCACAACGAGGTGAACCGGGTGACCGTCCGGCCCCGGGCCTCCACAGAGGACCTGGATCACTTACCGGACGACGAGAAAGGGAAGCGGATGTGGAACAAATACCTGGAGAGAGAAGACAGCCGAGTAGTGGATCTGTTTGTTGGGCAGCTCAAGAGCTCCTTGACCTGCTCTGACTGTGGCTACTGCTCCACCGTTCTTAACAGCCCTTTTTGTTTGCCCTTTGACCCGGTACAGAAAGGTTATGGCGAGGTCAGCTTGATGGACTGCATGCGGCTGTTCACCAAGGAGGACGTTCTGGACGGCGATGAGAAGCCGACATGCTACAGATGTAAAGCCAGGAGGAAATGCACAAAGAAGTTCACCATTCAGAAATTCCCAAAGATCTTGGTGCTCCGTATCCTTCCCATGCCAAAGACCCGGTTCTGGGTGTGTCCGGCTCACTATCTCAAGCGGTTCTCTGAAGCTCGGATCAGAACCAGCAAACTCTCCACGTTCGTCAACTTCCCCCTGAAGGACCTGGACCTCCGGGAGTTTGCATCTGAGAACAGCATCCACGCAGTCTATAACCTGTATGCAGTGTCCAATCACTCGGGGACGACCATGGGCGGCCACTACACAGCCTACTGCCGCAACCCTGCCTCCGGAGAGTGGTACACCTTCAACGACTCCAGAGTCACCCCAATGTCCTCCAGCCAAGTTCGCAGCAGCGATGCCTACGTCCTGTTCTACGAGCTGTCCACCTCCTCCAGAATGTGA

Function

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 2-like isoform X2

GO: NA

KEGG:

id description
K11833 USP2; ubiquitin carboxyl-terminal hydrolase 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004571 True 1368 mRNA 0.57 12 53935744 53949364

Neighbor

gene id symbol gene type direction distance location
AMCG00004572 NA coding downstream 7131 53910377 ~ 53928613 (-)
AMCG00004569 tecta coding downstream 30721 53878275 ~ 53905023 (-)
AMCG00004560 NA coding downstream 307862 53618422 ~ 53627882 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding downstream 324475 53607807 ~ 53611269 (-)
AMCG00004561 NA coding downstream 330328 53587275 ~ 53605416 (-)
AMCG00004573 NA coding upstream 14621 53963985 ~ 53965707 (-)
AMCG00004570 NA coding upstream 30381 53979745 ~ 53988395 (-)
AMCG00004574 ddx6 coding upstream 43087 53992451 ~ 54004550 (-)
AMCG00004579 NA coding upstream 155697 54105061 ~ 54122487 (-)
AMCG00004581 NA coding upstream 245984 54195348 ~ 54204995 (-)
G9161 NA non-coding downstream 70069 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 105964 53794078 ~ 53829780 (-)
G9149 NA non-coding downstream 213622 53721242 ~ 53722122 (-)
G9146 NA non-coding downstream 235159 53697376 ~ 53700585 (-)
G9145 NA non-coding downstream 240237 53694204 ~ 53695507 (-)
G9217 NA non-coding upstream 137211 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 256189 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 309199 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 699687 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 728300 54677664 ~ 54677917 (-)
AMCG00004567 NA other downstream 72375 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 746351 53179022 ~ 53189393 (-)
G8937 NA other downstream 984357 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 1023992 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 1061636 52850483 ~ 52874108 (-)
AMCG00004575 NA other upstream 83270 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 407096 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 492407 54441771 ~ 54450341 (-)
G9414 NA other upstream 627276 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 966220 54915584 ~ 54919938 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000053_00064905_00080433 USP2, USP2A, USP2B, USP21 coding CI01000053 null 63803 ~ 80812 (+)