AMCG00004573


Basic Information

Item Value
gene id AMCG00004573
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53963985 ~ 53965707 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004573
ATGCGGTCTGCCGCCGCCTCGCTGCAGCTGAGATCAGGCATGTCTCGCCTTTCCTCTACGGCCAAGCGCTACACGAGCTCCACCTACAGCAGCCAATATGGCTCCTACGGCTCCTCGCTGGGGTCCAGCCTGGGCTCCTACGGCGAGCGGGACAAGTACTCCTACAAGAgtcccacctcctcctccagctaCACGCCCTCCAGCTACCTGAGCACGGGCGCCGGGCGCACCCGCAACTACAGCACGTCCTCTGAGCCAGACCGGGGCCGCCCGATGCCCCGCACGGACCTGCTGGGCGGCCGGCGCAGCGAAAGCCTGAGCCGGACGCCAGTCAAGGCCTATGGCTCGGGCCTGAGTGGAGGGGGGGGCTACTCCAGCTACAGCTACTCCTCGAACCAGGCCAGCTAcctctccacctcctcccccGCGTCTTCCCGCATCACCCTCAGTCGCCGCAAGTCAGTCAGCCAGAGCGACCTGACCCGGGAACTAGCCTCCCTGGGGCTGTCGGACCCGTCACCCGGGGGCAGGGCGCTGGACGCCGGCTCGTACCGCAGCCGGGGCAGCGTCAGCAGCACTGGGAATGAGGTGAGCGACTCGTACGGCAGCTCCCGCTCCAGCTATGGCATCTCGCGCAGCTCCACGCAGGAGGCGctcggcagcagcagcagcagcagcctgagGAACAGCCGCTTCACCCCCTCCTGGGAGAGCAGCAGCCTGGGCCGAGGCGGCTCGCCCACCCGGGTGCCCACGGTGCCTGAAATGTTCAAGACATAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004573 True 780 mRNA 0.68 2 53963985 53965707

Neighbor

gene id symbol gene type direction distance location
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding downstream 14621 53935744 ~ 53949364 (-)
AMCG00004572 NA coding downstream 35372 53910377 ~ 53928613 (-)
AMCG00004569 tecta coding downstream 58962 53878275 ~ 53905023 (-)
AMCG00004560 NA coding downstream 336103 53618422 ~ 53627882 (-)
AMCG00004562 usf1,LOC107657261,LOC107601709 coding downstream 352716 53607807 ~ 53611269 (-)
AMCG00004570 NA coding upstream 14038 53979745 ~ 53988395 (-)
AMCG00004574 ddx6 coding upstream 26744 53992451 ~ 54004550 (-)
AMCG00004579 NA coding upstream 139354 54105061 ~ 54122487 (-)
AMCG00004581 NA coding upstream 229641 54195348 ~ 54204995 (-)
AMCG00004582 NA coding upstream 240373 54206080 ~ 54219868 (-)
G9161 NA non-coding downstream 98310 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 134205 53794078 ~ 53829780 (-)
G9149 NA non-coding downstream 241863 53721242 ~ 53722122 (-)
G9146 NA non-coding downstream 263400 53697376 ~ 53700585 (-)
G9145 NA non-coding downstream 268478 53694204 ~ 53695507 (-)
G9217 NA non-coding upstream 120868 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 239846 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 292856 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 683344 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 711957 54677664 ~ 54677917 (-)
AMCG00004567 NA other downstream 100616 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 774592 53179022 ~ 53189393 (-)
G8937 NA other downstream 1012598 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 1052233 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 1089877 52850483 ~ 52874108 (-)
AMCG00004575 NA other upstream 66927 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 390753 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 476064 54441771 ~ 54450341 (-)
G9414 NA other upstream 610933 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 949877 54915584 ~ 54919938 (-)

Expression


Co-expression Network