AMCG00004575


Basic Information

Item Value
gene id AMCG00004575
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54032634 ~ 54043428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004575
ATGCCCCGGACTGTCCGGTGTCCCCTGCCCGCCCCACTCATCggtgtcctctctctctgtctccctccagGCAGGACCGTTGACGGACGCGGCCCAGCGACACTGACCTTCCCCCTCCaccgcccccctcccccgcctCCCCAAGCCCCAGCCAATCAAATGCACCCTGAAAATAAACTGACCAATCATGGCAAGCAAACGAACAGCAGTGCCCAATCTCAGCTCCAGAATGtaaaccagcagcagcagcagcagcaagggCCCGCCTGCAGCCTGGGGTCGAAGGGCGTGGGGGCGGGGAACCATGGCACCAAGGCCAATCAGATGCCCCCAGGAAACTCCGGGCTGAAGAGCGGCGGCCAATCGGGCATGGGCGTCGGGGGACCGCTGAAGGGCAAGGCGAAGCGCGAGAGGAGTGTGTCGGCCGACTCTGGGGAGCAGAGGGACGCCCTCACCCCTTCCCTCGAACCCGACTCTAAAGCAGAGGGGGTGATGCGCAGTAAGCGGCGCTGTGTCCTGGAGAAGAAGCAGCCGTACAGCGGGGACGAGTGGTGCTCCGGGGCCGACTCCGACGACGACAACGACAAGCCGCCCACCGCCGCCCACCGGGATCGCTCTATGGCCGGCCCGCCCCAGTCCCACCCCGGACCCTCCCCTATGGGTGCTCTCAACGAATCGGGCTCCTCTGCCGGGGGTCTGAGTCTGGGGCCGGGGCTGCGTTCGGAGCTGGGTGCCGCCCCCAAGCCCCTGCAACAGGTGGTGTACGTGTTCACGACCAGCCTGGCCAACAGTGCTGCGGAGGCGGTGGTCCACGGACACGCCgactccatcctcctcttccaCCAGCAGAACGTCCCGCGGACCAAACTCGACCAGCACAGTGCAGCCGGCACCCCCCCCAGCGGCACCCCCAAATCCCAGAGTGCGACGCCGCGGCCAGCctccgggggtgggggggtgagcaGCCACCTGCACCCCGTGGGGACACCGTCCTCCTCCGCGGGACACCCCGAGGACGAGCCCCCTCGCACGGGAGAGGCGGGGGCGGCCCGACCAGGCGGCTCCGGTGGGATCCACCAATCGGGAAGCGGAGTCACCGGCAGCTCGGCCAATCCGGTGCCCGGAGCGGGAAGCAGCGAGGTCCCTCCATCCAACTCCAGCGGCTCGCCGCCCCCACCCTCAGCGGCGCAGCTCCTTGCGGACCCTCAGGCTGGGCAGCGGGGGGGGGACGGGCTCTCCAAGGAGCAACTGGAGCACCGTGAGCGATCACTGCAGACGCTGCGTGACATTGAGAGGCTGCTGCTGCGGGGCGGGGACCCGGGGGGCCCCGGCAGTGGCAACGGCGTGAATGCTGGTGGCGGCGGGGGGCCTAATGCCAGCAACAGCCACGACGGCAACTCCCTCAATAACAACGGCGATGGCGCGGGCACCTGCAGCAGCAATAACGGCAGCATGCCCCCCTCTGCGGCGCCCCTCCCCCCCCAGGGAGTCATGAAGAAGTACGAGGAGCCGCTGCAGTCCATCATCTCGCAGACGCAGAGCCTGGGGGGGGGCCCGGGGCTGGAGGAGCACCAGATGATGGGACCCCACCACTCCCTGCCTCCTCAACACCCACACCACCCTCACCAGCACCCCCACCAGCACccccaccctcaccctcaccagcacccccacccccacccactcTCCTCGCCCTCCGGGCTGGACATGGGGCTGCTGCTGGGCCCCGAGGGCCTGACCCCGGAGCAGATGGCCTGGCGCAAGCTGCAGGAGGAGTACTACCAGGAGAAGAGGCGGCAGCAGGAGATGCACCCCCACCCACACCACCCCCGCATGATGCCGGAGATGGGCCTGGGAGGGGGGCCCCCTATCATGATGCGGGGGCCCCCCCCTCCCTACCACTGCAAGCCTGGGGACCCACAGTGGCCTGTGCTGGGAGGAGAGATGGGCGCGGGGGGTAACGGCCGGCTGATGGACATGCACCCTGAGGGGCCGCGGGGGCCGCGTTTCCTGGGACAGGCGCAGAGGGGCCCCCCAGGGGGCGGGGGAGGTTACCCTGGAAATCCAGGGGCCGTGTTCTCGATGGACACCATGGGGCTGCAGAGGCCCCCCCGGCCAGGCATGGTCTGGATGGACGACATGCCCCCCAACATGGGAGGGGGCCCTTTCCAGGGGGGCTACCCCTCCTCCGCCAGGCCCCCCCAACACCTGCAGGGTGACCCCGAGCGGCTCCTGCCCCCACAGGAGATGCTGCGCGCGCTGGAGAAGAGGCAGCTGCAGGGGCTGCACCGCATGGAGATGGAGAAGATGGCCAAGCAGGCGGCCGGCGGCCCGCGGCTCATGGACATGCCTggcggagggggaggggtgtaCCCCAACTCTGGGCTGGGAGGGGGCGCGGGCCCACCCTCCCGCGGGGACCCCATGGACTTCCCCGGCTCCCGCGCCATGATGGGCTCGCCCCTCGGGGGgccagggggaggggggggcggaCCCCCCATGCGGGAGCTGGTGGACTCCCCCCTTGGCGGCGGCCTGAGCATGAACATGAACGTCAACATGAACCTGAGTCTGCAGATGGGCGGACAGCCCCCCCAGCTCCTGGGGCAGAAGGGGCGTGGCGGTGGGGGGCCGCTGGGCGACATGCTGAGCCCTGAGGAGGTGTCCCGTGCCCGCGCCTCACAGAATGGAGGTGGCATGGGGGGCAAGAGCATGGGCCCGGAAAGTGGAGGCCACTTCTCTGGCCAGGGGCCCTTCCCTGGGGGGCCAGGCGGGGGGGGCTACCTCCCTCAGGAGCACGGCCCCGAGATGTTCGTCAACGAGCAGCAGGGCCCTCCCCTGGGAGGCACCTCCCGGCTCAGCCACATGCCTATGAGTGCTGCCCCCAGGGGCCCTGGGCTCGGCCCCCGACGGCCCTCAGACCTCTCCATCAACATGCACCCCCTGGGGTCCCCGGCCATGGCCCCCCCACACCACCTCAAATCTCCCTCTGTCAGCCAGGCTGCCTCCCCCATGATGCCCTCCCCCTCGGCCCCAGGGCTCAAGTCCCCACAGCTGCCCTCCTCTGGCCCCCCCCCTCCGCAACACAACCCCGCCACCACCGGCGCCGGCACCCCCTCCTCCATGAAGTCCCCCCAGGTGATGGGCCCCTCCTCTCTGGGCGTGCGCTCTCCCTCGGGGTCCCCCGGGCACCTCAAATCCCCGGCCATGCCTGTGGCCTCCCCCGGCTGGACGGCCTCCCCCAAAACCGCCCTGCCCAGCCCTGGGGGGGCACCTGGGGGTAAGGGGGGTGGCAACGGGGGCAACAGCTCCATGGACACAGgtccctcccttcctccccgGAGCAGCAACTCCACCCCCATCAGCCAGCCGGGATCCATCAATCCCAGCATGCCCTTCACGTCCTCGCCGGATGCGCCCCCTCCTTCCCAGAACCCCCTGTCTCTCATCATGTCCCAGATGTCCAAGTACGCCATGCCCAGCTCCACGCCGCTGTACCACGACGCCATCAAGACCATCGCCACCTCCGACGACGAGATGCTCCCAGACCGGCCCCTGATGCCCGGTGTCAACATGGCAGGGAGCATGGGGAACCACCAGGGCCCCCCGATGCACCTCGGCTCGCAGAACTCCATGGGTCCCCACAGCGGCTCTCAAAGCCCCATGGGCATGGTCCTCCAGGGCCAGCCCCCGCTGTCCCACGAACCCTCGGGGCCTATGCTGCACTCCCCCAACCCCATGGGCATGGGGATGAACCCGGCAATGATGGGGGGAGGCGGCGGTGGCCCCCCGGATAGCATGGGCCCCTGCACAGTGTCGCCCCTGCTCCCCCAGAACCAGATGGGCGGCTTCCCAAGGCTgcagcccccgcccccccatgGACCCCTGCACTCCCCGGGACCCCACCCCGGGATGCCCCAGCAGTACCCCTCCGAGGAGGCCCTGGCGCATCACCAGCTGCAGCTGCTCAGCAAGAGCCTGGCTTCCCAACGGCCCCCCCAGGACTCGTACCCCCTGCCCCTGGGTGACGGCCCCGACCTGAGCGAGGTGATCCGGCCCTCCGCCTCGGGGATCCCCGAGTTTGACCTGTCGCGCATCATCCCCTCGGACAAGCCCAGCAGCACCCTGCACAGCGCCCCCTCCTCCAACCCCCACCTGGCCAACCTGCAGAACATGATGGCCGAGCAGCAGCTGCCCCCGCCCCTGCCCCACCACCCCCACTCCGGCCTGCGGCCCGGCCTGGGCATGGGCCAGGGACCGCCCCCGGGTCTGGCCAGGGGCATGGGGGCCGGGGGCGGGATGCCACCCATGTGCCACCCGGGACACATGATGGGCAGGACAGCCATGGGGCCGCCCCACAACTCCATGCAgcaccaacaccaccaccaacaccaccaccatcagcagcagcagcagcaacagcagcagcagcaacagcagcagcagcagcaacagcagcagcagcagcagcagcagcagcagcagcagcaagccATGATGGCCAACAGCCTGCTCCAGCACCCCTCCATGATGTCcccccagcagcagcatcagcacAGCCTGATGGCCCAGCAGAGCCTGATGATGATGCAGGCCAAGCAGCGCAGCATGTCCCTCCCCGGGGACCCCTATGCCCAGCAGGGTCCCCTCCTGTCCCCTCAGGGCCCCATGATGGGCCCCCTGCACCCCCAGGCTGGCATGATGGGCCCCCAGAGCCTGCGCCAGCGGGGCATGTCCCTGGACAGCCCCCTGGGGTACGGACCCAGCAGCATGGCCAACATGCCCTTCTGA
>TU11409
CAggtccctcccttcctccccgGAGCAGCAACTCCACCCCCATCAGCCAGCCGGGATCCATCAATCCCAGCATGCCCTTCACGTCCTCGCCGGATGCGCCCCCTCCTTCCCAGAACCCCCTGTCTCTCATCATGTCCCAGATGTCCAAGTACGCCATGCCCAGCTCCACGCCGCTGTACCACGACGCCATCAAGACCATCGCCACCTCCGACGACGAGATGCTCCCAGACCGGCCCCTGATGCCCGGTGTCAACATGGCAGGGAGCATGGGGAACCACCAGGGCCCCCCGATGCACCTCGGCTCGCAGAACTCCATGGGTCCCCACAGCGGCTCTCAAAGCCCCATGGGCATGGTCCTCCAGGGCCAGCCCCCGCTGTCCCACGAACCCTCGGGGCCTATGCTGCACTCCCCCAACCCCATGGGCATGGGGATGAACCCGGCAATGATGGGGGGAGGCGGCGGTGGCCCCCCGGATAGCATGGGCCCCTGCACAGTGTCGCCCCTGCTCCCCCAGAACCAGATGGGCGGCTTCCCAAGGCTgcagcccccgcccccccatgGACCCCTGCACTCCCCGGGACCCCACCCCGGGATGCCCCAGCAGTACCCCTCCGAGGAGGCCCTGGCGCATCACCAGCTGCAGCTGCTCAGCAAGAGCCTGGCTTCCCAACGGCCCCCCCAGGACTCGTACCCCCTGCCCCTGGGTGACGGCCCCGACCTGAGCGAGGTGATCCGGCCCTCCGCCTCGGGGATCCCCGAGTTTGACCTGTCGCGCATCATCCCCTCGGACAAGCCCAGCAGCACCCTGCAGTACTTCCCCAAGAGCGAGGGCCCCGGACCCC

Function

GO:

id name namespace
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048368 lateral mesoderm development biological_process

KEGG:

id description
K22649 BCL9, BCL9L; B-cell CLL/lymphoma 9 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004575 True 4791 mRNA 0.70 8 54032634 54043428
TU11409 False 843 TUCP 0.44 2 54033464 54035522

Neighbor

gene id symbol gene type direction distance location
AMCG00004574 ddx6 coding downstream 28084 53992451 ~ 54004550 (-)
AMCG00004570 NA coding downstream 44239 53979745 ~ 53988395 (-)
AMCG00004573 NA coding downstream 66927 53963985 ~ 53965707 (-)
AMCG00004571 LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 coding downstream 83270 53935744 ~ 53949364 (-)
AMCG00004572 NA coding downstream 104021 53910377 ~ 53928613 (-)
AMCG00004579 NA coding upstream 61633 54105061 ~ 54122487 (-)
AMCG00004581 NA coding upstream 151920 54195348 ~ 54204995 (-)
AMCG00004582 NA coding upstream 162652 54206080 ~ 54219868 (-)
AMCG00004583 NA coding upstream 180375 54223803 ~ 54226053 (-)
AMCG00004589 NA coding upstream 287820 54331248 ~ 54342566 (-)
G9161 NA non-coding downstream 166959 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 202854 53794078 ~ 53829780 (-)
G9149 NA non-coding downstream 310512 53721242 ~ 53722122 (-)
G9146 NA non-coding downstream 332049 53697376 ~ 53700585 (-)
G9145 NA non-coding downstream 337127 53694204 ~ 53695507 (-)
G9217 NA non-coding upstream 43147 54086575 ~ 54087038 (-)
G9261 NA non-coding upstream 162125 54205553 ~ 54206013 (-)
G9273 NA non-coding upstream 215135 54258563 ~ 54273287 (-)
G9427 NA non-coding upstream 605623 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 634236 54677664 ~ 54677917 (-)
AMCG00004567 NA other downstream 169265 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 843241 53179022 ~ 53189393 (-)
G8937 NA other downstream 1081247 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 1120882 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 1158526 52850483 ~ 52874108 (-)
AMCG00004590 LOC106612637 other upstream 313032 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 398343 54441771 ~ 54450341 (-)
G9414 NA other upstream 533212 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 872156 54915584 ~ 54919938 (-)
G9604 NA other upstream 1324157 55367585 ~ 55420058 (-)

Expression


Co-expression Network