AMCG00004598


Basic Information

Item Value
gene id AMCG00004598
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54441771 ~ 54450341 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004598
gacacacagagacacagagagacagacacggagagagagTCCTCCCTTGCGTTGAGGAAAGCGCTGCCTGTTGTCTCCAGTAAACGCGAGCCGCGTAAGGCGCCAGGTTCTGATCGGGTCCGACCCAGTCACAGGCCTCCAAGTCAACCGTCGCCAGAGTAAGGAGATCGCCGCCGTGAGCGACGTCTAGAGCCAAGATGAACAAAGTCATCCTCTGCCTCTTCCTCACCATAACTGTAGATCACTGTGTTTCAGATACTGTGGTGTGTGAGAACTGCTACGAGGTGGAGATACCGATGCTGGCCGGTGTGATCGTGATCGACCTGCTGGTGACAATGGGGGTCGTGATCCTGGTCTACTACTGCTCCCAGAAGAAGGGTGGCGCCTCGCCTCTTGCCCCAGCCTCCCGTCCTGGACGCAATGACCGCGCCCCCCCGGTGCCCAACCCTGACTACGAGCCCCTTCGCACTGGGACCCATGACCTGTACAGCGGACTCCATAAGAACTAGGATCTGTCCTTGGCCTTTCCAGTCTGTTTCCAACCCAGTTCTCCCAGTCTGTTGGGCTCCTaccttcctcctcttcctcaagCACAAAAAAATGCTCAAATTACTTCATTAATCTAGTTATGTGATCAGTTACAGGTATATAATAGAAGCCGAACTCCCTACTTTGGGGGATGCCAGTTCTCTCTGCACTCCATAGTCTATCCAAGTCCACTGAATCGTTTCCTTGCTTAATTCATTAAAAGGACAACTCATTTAATTGTCCCATAGCTGATCGCGTGGGAAGCCTGTAAATAGTGCAACATGTTTTGTAAACACCTGGATTGTCTACGGTAAATGAAAGCCCACGTCAACAGTATTGTGTTAAAAAGTAAAGCTGACTAATGTCGCCAACCGTGTCAGTGTAAAATTATCTCAGTGAAACatcatcagtgtgtgtgtctgtgttttttccacTCATCACTTTGTCAATATGTGTAAGACTGCGCAGTCACGTCGCCGGCCTTTTCTGTAAACTTTACGATTATATTCCGGAACTCGGCGGGATTCTCTCGGAATGGAAGGGTCAGCCGTTCTGAAGATAAATTCATCTGCGCTTGTTTTTCAAGAGCTCTTATTCGCTAGACAGCGGCGCTAGTTTTCACAATCTGATACGAGTAGATCTGTAAAGTACAAGACTTTttatgtacagttttttttgtatattgtaaaaaatattttcatttttagacTTCGTCGGAGTATACTAATTGATTGATAATGATTTAGAAAACTAGTATGATTAGTTTAATTTTTACAGGCAAGGTTTGATACACCCTATATAGCCGAGTACTACAACATCTTTGACACCGAAAAAACAGATACCATTGTGATCctctttttcttctcaaaattgaaatagatttaaatctgatgtgtttttaataatcagGCATCATTTACAGCAAACCCAATGGGTGGAAGAAATATATTCAGCACCCACCAGGGCTGCAAGTGatgatatttgtattatatatatttttgggagAAAAGTAgaaattgtacatatttttataaaaagtattttcaaaccAAGTCCTTTTTGCATAGATTAAAAAGCCTCAGTGATGAAAAGGGTATTTTTATTGTAAGCATTGGCCTGAAATCACGCTGTTTAgcacaatttattttctaatttctgGTCACACAACCGAGCTGTTTGTAGAATGCCAGTGATGTTATCCGGCCAGGGTAGTAACGGCGGCCATGGCTGTCACATGACGGTGTGTTGCTCAGACAGGAGATACAATAATGGTATATTTCAGATTGATGTAAAAAACAATCGGCCCAACTATGCGTCTGTAATTTACACAAGAGACAGACAGGTGGTGAATCGGGGACAATAATTTGGAAGAAGCGGTGGAGCGTTTCTACTGTTTGTGCCTCTCAGAACATTTCTCTCTCATTGATGCTTGTTCCTCAACTGGATTGAACTATTTATGTGATTTGATTGTGGCTCCTTCGTTCCACTCAGTGAAACACTTCCCATATAGTGTCTGTGTCAGTCTTAGGGATTTACTGAGTGATGAGAAGAGCTACACCGGCACAGAAGAAATGGGAAAAGgtttatacagaaataaatgtacaattacGATTTTTAGccactttttaatttatacCTGTAGTTCTTTTGTTGAGAGCCATTTAATGCTAACCTGAACTTGCAAATAATATGTCTGAAATTTGTAATACTGTGATTAAACTGTTCAAGTGATTGTTGCTTGGCAAAACGCTCTCCGCTTGTTCTTATTGAAGTGTTCCGGTTCTGGTTTTGTGAAcaaatctttcattttctttggttttgGACACTTGTTTAGTAGATGCATGTATTCAATTGATGAAAAGGTACCAAAATACGCCTCAGAAATGTTTTAGtgaccaaataaaaacaggagAAGGAACATTTTGGTATCGGCTCATGAGGGTGTCCatagaaaacattaatatttgcTTTCTAATTGTTTTACTACAGGGGCACTCAGGGATAAGTCAAAGTAAACATAtatgatttaattgtttttaattggcacATGCAATACACAAAATACGCACTTTGAATACTTGGTATAAAACAATTGCTTGAGCACATCAAATGGAAATAGTTATCAATAAATACTGAATTGTATAGCTGGATATATTTAGATTATAATTAGAAAATACATCATGGAAGCTTTCTGGTTTCAAAATAGACTGCTATTAGGCTCCCCTTATCTGTCAGTGATGATTTCTGAGCGGCTGCCGCTGCTTCGGGTTTAATTTTGCGTTTGTTCCAGCAACCGTCTCTTCTTGTGGCTCCCGGTTGTGCAACGAGCCGCCTGTCGGAGGGCTAGTGTCTGTTTATCAGGCTGAATGATCTGAGTGAACCTGCGGAGAATGGAAACATTGTCAGCCGCGAGGCTCATCGCAGATCACCGCcggttttgtttttgccttttcagGGCTTAATGGAAACAAGCGTGTCTGTCTCTGACTGAAACTGTGAGAAAAACAAGGCGGTTTGTTCTGCTTTGGCCTACTGGGCTCCTTTGTAAACAGAGCTGCTTTTTCTGGAaagattataatttattttaaagaaatctaaataaatgttaataaaatgacGTGTG
>TU11586
GTTTGAGGTGGTTTCAGCACCAACTCCAGGGAGGTGCTCTGATGATGGTTACAACCTCTGCTCGGGGGGTGCGACCCTAAAGGTCTGATGGCCGAGATTGTCCTCCACTGATAACTACTGGGGTGTCACTGCCGCTCGGGGGGGTTGCGAGTCTGCGGAACAATCCAGTTCGCGATCTTGCGGCTGGCGCTGAGCGACGCCCTCGCCCCCAACCACTGCACTTCCTGCCccgagacagagacacacagagacacagagagacagacacggagagagagTCCTCCCTTGCGTTGAGGAAAGCGCTGCCTGTTGTCTCCAGTAAACGCGAGCCGCGTAAGGCGCCAGGTTCTGATCGGGTCCGACCCAGTCACAGGCCTCCAAGTCAACCGTCGCCAGAGTAAGGAGATCGCCGCCGTGAGCGACGTCTAGAGCCAAGATGAACAAAGTCATCCTCTGCCTCTTCCTCACCATAACTGTAGATCACTGTGTTTCAGATACTGATCCATCGAAGTCTCTGGAACCACGGTTACCCTGAACTGTGACTATGACACACCACAATGGGGCAAAGTAAAAGGGGAGTTCGACCCAAAACACACCACATCAAAATTCTTATCAATTTCAAATTACAGCGACGaatctgtattgtattattgttatgagCATGAAGATAGAAAAACCTATTTTTACTTCAAGGGAAAAGTGTGTGAGAACTGCTACGAGGTGGAGATACCGATGCTGGCCGGTGTGATCGTGATCGACCTGCTGGTGACAATGGGGGTCGTGATCCTGGTCTACTACTGCTCCCAGAAGAAGGGTGGCGCCTCGCCTCTTGCCCCAGCCTCCCGTCCTGGACGCAATGACCGCGCCCCCCCGGTGCCCAACCCTGACTACGAGCCCCTTCGCACTGGGACCCATGACCTGTACAGCGGACTCCATAAGAACTAGGATCTGTCCTTGGCCTTTCCAGTCTGTTTCCAACCCAGTTCTCCCAGTCTGTTGGGCTCCTaccttcctcctcttcctcaagCACAAAAAAATGCTCAAATTACTTCATTAATCTAGTTATGTGATCAGTTACAGGTATATAATAGAAGCCGAACTCCCTACTTTGGGGGATGCCAGTTCTCTCTGCACTCCATAGTCTATCCAAGTCCACTGAATCGTTTCCTTGCTTAATTCATTAAAAGGACAACTCATTTAATTGTCCCATAGCTGATCGCGTGGGAAGCCTGTAAATAGTGCAACATGTTTTGTAAACACCTGGATTGTCTACGGTAAATGAAAGCCCACGTCAACAGTATTGTGTTAAAAAGTAAAGCTGACTAATGTCGCCAACCGTGTCAGTGTAAAATTATCTCAGTGAAACatcatcagtgtgtgtgtctgtgttttttccacTCATCACTTTGTCAATATGTGTAAGACTGCGCAGTCACGTCGCCGGCCTTTTCTGTAAACTTTACGATTATATTCCGGAACTCGGCGGGATTCTCTCGGAATGGAAGGGTCAGCCGTTCTGAAGATAAATTCATCTGCGCTTGTTTTTCAAGAGCTCTTATTCGCTAGACAGCGGCGCTAGTTTTCACAATCTGATACGAGTAGATCTGTAAAGTACAAGACTTTttatgtacagttttttttgtatattgtaaaaaatattttcatttttagacTTCGTCGGAGTATACTAATTGATTGATAATGATTTAGAAAACTAGTATGATTAGTTTAATTTTTACAGGCAAGGTTTGATACACCCTATATAGCCGAGTACTACAACATCTTTGACACCGAAAAAACAGATACCATTGTGATCctctttttcttctcaaaattgaaatagatttaaatctgatgtgtttttaataatcagGCATCATTTACAGCAAACCCAATGGGTGGAAGAAATATATTCAGCACCCACCAGGGCTGCAAGTGatgatatttgtattatatatatttttgggagAAAAGTAgaaattgtacatatttttataaaaagtattttcaaaccAAGTCCTTTTTGCATAGATTAAAAAGCCTCAGTGATGAAAAGGGTATTTTTATTGTAAGCATTGGCCTGAAATCACGCTGTTTAgcacaatttattttctaatttctgGTCACACAACCGAGCTGTTTGTAGAATGCCAGTGATGTTATCCGGCCAGGGTAGTAACGGCGGCCATGGCTGTCACATGACGGTGTGTTGCTCAGACAGGAGATACAATAATGGTATATTTCAGATTGATGTAAAAAACAATCGGCCCAACTATGCGTCTGTAATTTACACAAGAGACAGACAGGTGGTGAATCGGGGACAATAATTTGGAAGAAGCGGTGGAGCGTTTCTACTGTTTGTGCCTCTCAGAACATTTCTCTCTCATTGATGCTTGTTCCTCAACTGGATTGAACTATTTATGTGATTTGATTGTGGCTCCTTCGTTCCACTCAGTGAAACACTTCCCATATAGTGTCTGTGTCAGTCTTAGGGATTTACTGAGTGATGAGAAGAGCTACACCGGCACAGAAGAAATGGGAAAAGgtttatacagaaataaatgtacaattacGATTTTTAGccactttttaatttatacCTGTAGTTCTTTTGTTGAGAGCCATTTAATGCTAACCTGAACTTGCAAATAATATGTCTGAAATTTGTAATACTGTGATTAAACTGTTCAAGTGATTGTTGCTTGGCAAAACGCTCTCCGCTTGTTCTTATTGAAGTGTTCCGGTTCTGGTTTTGTGAAcaaatctttcattttctttggttttgGACACTTGTTTAGTAGATGCATGTATTCAATTGATGAAAAGGTACCAAAATACGCCTCAGAAATGTTTTAGtgaccaaataaaaacaggagAAGGAACATTTTGGTATCGGCTCATGAGGGTGTCCatagaaaacattaatatttgcTTTCTAATTGTTTTACTACAGGGGCACTCAGGGATAAGTCAAAGT

Function

GO: NA

KEGG:

id description
K06451 CD3E; T-cell surface glycoprotein CD3 epsilon chain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004598 True 3151 mRNA 0.42 4 54441771 54450102
TU11586 False 2977 lncRNA 0.43 5 54442381 54450341

Neighbor

gene id symbol gene type direction distance location
AMCG00004599 sidt2 coding downstream 42853 54394475 ~ 54398918 (-)
AMCG00004592 NA coding downstream 67824 54373699 ~ 54373947 (-)
AMCG00004591 NA coding downstream 85322 54355007 ~ 54356449 (-)
AMCG00004589 NA coding downstream 99205 54331248 ~ 54342566 (-)
AMCG00004583 NA coding downstream 215718 54223803 ~ 54226053 (-)
AMCG00004605 NA coding upstream 151118 54601459 ~ 54606827 (-)
AMCG00004607 NA coding upstream 249475 54699816 ~ 54708011 (-)
AMCG00004622 NA coding upstream 527506 54977847 ~ 54998428 (-)
AMCG00004621 NA coding upstream 559363 55009704 ~ 55018100 (-)
AMCG00004620 NA coding upstream 579919 55030260 ~ 55035952 (-)
G9273 NA non-coding downstream 168484 54258563 ~ 54273287 (-)
G9261 NA non-coding downstream 235758 54205553 ~ 54206013 (-)
G9217 NA non-coding downstream 354733 54086575 ~ 54087038 (-)
G9161 NA non-coding downstream 576096 53864951 ~ 53865675 (-)
G9153 NA non-coding downstream 611991 53794078 ~ 53829780 (-)
G9427 NA non-coding upstream 198710 54649051 ~ 54676988 (-)
G9431 NA non-coding upstream 227323 54677664 ~ 54677917 (-)
G9445 NA non-coding upstream 243005 54693346 ~ 54789735 (-)
G9461 NA non-coding upstream 336053 54786394 ~ 54788637 (-)
G9502 NA non-coding upstream 473188 54923529 ~ 54974997 (-)
AMCG00004590 LOC106612637 other downstream 68144 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 398343 54032634 ~ 54043428 (-)
AMCG00004567 NA other downstream 578402 53686416 ~ 53863369 (-)
AMCG00004551 NA other downstream 1252378 53179022 ~ 53189393 (-)
G8937 NA other downstream 1490384 52946812 ~ 52951387 (-)
G9414 NA other upstream 126299 54576640 ~ 54620055 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other upstream 465243 54915584 ~ 54919938 (-)
G9604 NA other upstream 917244 55367585 ~ 55420058 (-)
G9608 NA other upstream 931875 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 1079309 55529650 ~ 55551225 (-)

Expression


Co-expression Network