AMCG00004618 (dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081)


Basic Information

Item Value
gene id AMCG00004618
gene name dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54915584 ~ 54919938 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004618
ATGAAGAGCAGCGCCACCCCCAGGGTGACCAGGATGACGGGGCAGGCGATGGTGAACAGCTTCTTCACATCGTCCCCTTCCCCGCTGCCCCCTGACCAACCCCGCCTCACCGTGTccaccacctccacctcctccatCACACTGGCCTGGATCCCCGGGGACAACGGAGGCAGCTCCATCAGAGGCTTCGTGCTGCAGTACTCGGTGGACAACACGGAGGAGTGGAAGGACGTGTTCATCTCGTCCACCGAACGCTCCTTCAAGCTGGACAACCTGCGCTGCGGAACCTGGTACAAGGTCAAGCTGGCGGCCAAGAACAGCGTCGGAGCCGGACGCATCAGCGAGATCATCGAGGCCAAGACCCACGGCCGGGAGCCCCAGTTCAACAAGGACCAGCACCTGTTCACCCACATCAACTCCACGCACGCCCGGCTCAACCTGCAGGGCTGGAGTAGCGGCGGCTGCCCCATCACCGCCATCCTGCTGGAGTTCCGGCCCAAGGGCACCTGGGCCTGGCACGTCCTGCGCACCAACACCTCCGCCGACGTGTTCCTGGCTGAGCTGCGTGAGGCCACCTGGTACGAGCTGAAGATGAAGGCCTGCAACAGCGCTGGCTGCGGCAACGAGACATCACAGTTCGCCACGCTGGACTACGATGGCAGTGAGTACgccacagcactgacacaccgGCACTGA
>TU11738
AGTGCCCCCTGACCAACCCCGCCTCACCGTGTccaccacctccacctcctccatCACACTGGCCTGGATCCCCGGGGACAACGGAGGCAGCTCCATCAGAGGCTTCGTGCTGCAGTACTCGGTGGACAACACGGAGGAGTGGAAGGACGTGTTCATCTCGTCCACCGAACGCTCCTTCAAGCTGGACAACCTGCGCTGCGGAACCTGGTACAAGGTCAAGCTGGCGGCCAAGAACAGCGTCGGAGCCGGACGCATCAGCGAGATCATCGAGGCCAAGACCCACGGCCGGGAGCCCCAGTTCAACAAGGACCAGCACCTGTTCACCCACATCAACTCCACGCACGCCCGGCTCAACCTGCAGGGCTGGAGTAGCGGCGGCTGCCCCATCACCGCCATCCTGCTGGAGTTCCGGCCCAAGGGCACCTGGGCCTGGCACGTCCTGCGCACCAACACCTCCGCCGACGTGTTCCTGGCTGAGCTGCGTGAGGCCACCTGGTACGAGCTGAAGATGAAGGCCTGCAACAGCGCTGGCTGCGGCAACGAGACATCACAGTTCGCCACGCTGGACTACGATGGCAGT

Function

symbol description
dscaml1 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and central nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in brain; ciliary marginal zone; retinal ganglion cell layer; and retinal inner nuclear layer. Used to study ocular motility disease and ocular motor apraxia, Cogan type.

NR:

description
PREDICTED: Down syndrome cell adhesion molecule-like protein 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004618 True 696 mRNA 0.64 4 54915584 54919938
TU11738 False 580 lncRNA 0.42 3 54915617 54918457

Neighbor

gene id symbol gene type direction distance location
AMCG00004607 NA coding downstream 207573 54699816 ~ 54708011 (-)
AMCG00004605 NA coding downstream 308757 54601459 ~ 54606827 (-)
AMCG00004599 sidt2 coding downstream 516666 54394475 ~ 54398918 (-)
AMCG00004592 NA coding downstream 541637 54373699 ~ 54373947 (-)
AMCG00004591 NA coding downstream 559135 54355007 ~ 54356449 (-)
AMCG00004622 NA coding upstream 57909 54977847 ~ 54998428 (-)
AMCG00004621 NA coding upstream 89766 55009704 ~ 55018100 (-)
AMCG00004620 NA coding upstream 110322 55030260 ~ 55035952 (-)
AMCG00004625 ugdh coding upstream 196699 55116637 ~ 55136087 (-)
AMCG00004627 NA coding upstream 220967 55140905 ~ 55141489 (-)
G9445 NA non-coding downstream 125849 54693346 ~ 54789735 (-)
G9461 NA non-coding downstream 126947 54786394 ~ 54788637 (-)
G9431 NA non-coding downstream 237667 54677664 ~ 54677917 (-)
G9427 NA non-coding downstream 238596 54649051 ~ 54676988 (-)
G9273 NA non-coding downstream 642297 54258563 ~ 54273287 (-)
G9502 NA non-coding upstream 3591 54923529 ~ 54974997 (-)
G9512 NA non-coding upstream 81645 55001583 ~ 55003803 (-)
G9504 NA non-coding upstream 87824 55007762 ~ 55008798 (-)
G9517 NA non-coding upstream 99959 55019897 ~ 55020096 (-)
G9523 NA non-coding upstream 154108 55074046 ~ 55074375 (-)
G9414 NA other downstream 295529 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 465243 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 541957 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 872156 54032634 ~ 54043428 (-)
AMCG00004567 NA other downstream 1052215 53686416 ~ 53863369 (-)
G9604 NA other upstream 447647 55367585 ~ 55420058 (-)
G9608 NA other upstream 462278 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 609712 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 817627 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 894464 55814402 ~ 55846171 (-)

Expression


Co-expression Network