AMCG00004622


Basic Information

Item Value
gene id AMCG00004622
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 54977847 ~ 54998428 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004622
ATGGCACTGCCCGCCCTGCTGCTACCCCCCCTGCTGCTTCTGACCATCACTGCGCCCCCCCCTGTCTCTGGGGAGTCCTGTGGATCAGGCCAGGGCTGGGCGGTGCGGCTGAGCCTGGGGGGGGGCGAGGACAGAGCGACGATGGATGAGCTGGCCCTGCGCGTGGCTGCAGACGCCGGGCTGGAGAGCCGGGGGCAGATCGGGCAGCTGGAGGGGCACTACCTTCTGTGCCCGGGCACCTGGGCAGGCCAGGGAGCGGCACATGTGCTGTCCAAACACCCCACAcacaACAAGGCCAAGGTTGGCATGGACATCAATGTGACAGGGGTGTGGGAGCGCAATGTCACAGGGTCAGGGGTCACAGTGGTTGTCGTTGACGACGGGCGACAACCACCACGGCACACGCTGCGCCGGGGAGATCGCTGCCGCGCCCAACAACAGCTTCTGCGCCGTGGGCGTGGCCTATGGGAGCCGCGTGGCAGctgGGGCCCCGATGACGATGGCCGGACTGTGGACGGACCCCACCCACTGGGCAAGGCAGCACTCCAGCATGGGGTCATTGCCGGCAGGAAGGGCTTCGGCAGCATCTTCGTGGTCGCCAGCGGCAATGGGGGCCACAGTGGAGACAAACAGATGCGCAGCATTGTGCGCCCCTGCCTCACCTGGAGAGACGTGCAGCACATCATCGTCCACACGGCCACCAAGTACGAGGACCGGCACGCAGGCTGGGAGACCAACGGTGCCGGCTTCCACCACAGTTACCAGCACGGCTTCGGCCTTCTGAACGCCTGGAGACTCGTCAACGCTGCCAAGGTTTGGGAGTCGGTGCCGTTCCTGGTTTCCTATCAGAGTCCAGAGCAGAGTCTGGGCACGGTGATCCCAGCGTTCCCCAACAGCCTCAGTCTCACCTGGAATGGGATGCAGACGCTGGAGCACGTAGCCATCACTATTACGATGACCCACCCCCGCCGCGGCAACGTAGAGATCATGCTGAGCTGCCCTAGCGGGATGTCCTCACTGATCGGAGCCCGGCGCTTCATGGACACGGACCCCTCTGGCTACACTGACTGGACCTTCTCCTCGGTGCGCTGCTGGGGGGAGCGAGCCGAGGGCCAGTACAGCGTTCACTTCAGCGACCACAGGGAAGCGGCTCTGGTTCCTGGGACCCTGAATCGCTGGAGGCTGACTCTGTACGGTTCGTCTCTGTCCTATGAGGCTTCCCTGCTGCTCCTGGGTTGCTTCGCCCTGTTCTGGTCTCTATACTACACCCTGGAGGTCAGCCTGGCTCACCTGGACTGGCGGGGGCTGTGCCGCCGGCAGGGACCTGGCAAGGGAGGTATGGAAGCCGGGGATGAGAGCCCCGAGTCGGAGGACGTAATCCCCCTGCACAGACTGAGCGCCTCCGGCCCCCAGACACCCCCCACACTGCAACTGGAGAATGAGAGagcagtggaggaggaggaggaggaagaagaagaagaagaagaagaagagaaagtcCCCCTAATTGTCGGGGTCCCCAGCACGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004622 True 1530 mRNA 0.64 13 54977847 54998428

Neighbor

gene id symbol gene type direction distance location
AMCG00004607 NA coding downstream 269836 54699816 ~ 54708011 (-)
AMCG00004605 NA coding downstream 371020 54601459 ~ 54606827 (-)
AMCG00004599 sidt2 coding downstream 578929 54394475 ~ 54398918 (-)
AMCG00004592 NA coding downstream 603900 54373699 ~ 54373947 (-)
AMCG00004591 NA coding downstream 621398 54355007 ~ 54356449 (-)
AMCG00004621 NA coding upstream 11276 55009704 ~ 55018100 (-)
AMCG00004620 NA coding upstream 31832 55030260 ~ 55035952 (-)
AMCG00004625 ugdh coding upstream 118209 55116637 ~ 55136087 (-)
AMCG00004627 NA coding upstream 142477 55140905 ~ 55141489 (-)
AMCG00004628 NA coding upstream 206657 55205085 ~ 55219718 (-)
G9502 NA non-coding downstream 2850 54923529 ~ 54974997 (-)
G9445 NA non-coding downstream 188112 54693346 ~ 54789735 (-)
G9461 NA non-coding downstream 189210 54786394 ~ 54788637 (-)
G9431 NA non-coding downstream 299930 54677664 ~ 54677917 (-)
G9427 NA non-coding downstream 300859 54649051 ~ 54676988 (-)
G9512 NA non-coding upstream 3155 55001583 ~ 55003803 (-)
G9504 NA non-coding upstream 9334 55007762 ~ 55008798 (-)
G9517 NA non-coding upstream 21469 55019897 ~ 55020096 (-)
G9523 NA non-coding upstream 75618 55074046 ~ 55074375 (-)
G9533 NA non-coding upstream 115914 55114342 ~ 55116494 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 57909 54915584 ~ 54919938 (-)
G9414 NA other downstream 357792 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 527506 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 604220 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 934419 54032634 ~ 54043428 (-)
G9604 NA other upstream 369157 55367585 ~ 55420058 (-)
G9608 NA other upstream 383788 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 531222 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 739137 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 815974 55814402 ~ 55846171 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008199 pcsk7 coding NC_007126.7 CM002899.2 518092 ~ 542133 (+)