AMCG00004625 (ugdh)


Basic Information

Item Value
gene id AMCG00004625
gene name ugdh
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55116637 ~ 55136087 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004625
ATGGCTGTCCAATCCAACAGAAACCGCAGCAGTTTCCTGAAGCTGGGCAATGCGGTGGTGACAGCAGCCATGTTTCAGATTAAGAAGATCTGCTGTATCGGGGCCGGCTATGTTGGGGGTCCAACGTGCAGCGTTATTGCGCAGATGTGTCCGCAGATCAAGGTTACAGTGGTGGACCCTGGTCTGAAGGAAGTGGTGGAGTCCTGCAGAGGAAAGAATCTCTTCTTCTCCACCGATATCAACTCTGCCATTAAAGAGGCAGACCTCGTCTTCATTTCTGTGAACACCCCGACGAAAACCTACGGCATGGGGAAGGGCCGGGCGGCTGACCTCAAGTTCATCGAAGCCTGTGCCCGGCGGATAGTGGAGGTGTCTGACGGGTACAAGATCGTGACGGAGAAGAGCACGGTGCCGGTGCGCGCGGCCGAGAGCATCCGGAGGATATTTGACGCCAATACCAAGCCCAGCCTCAACCTGCAGGTGCTGTCCAACCCCGAGTTCCTGGCAGAGGGTACGGCCGTGCGGGACCTGAAGAACCCAGACCGCGTCCTGATTGGGGGTGACGAGACACCCGAGGGCCAGAGGGCTATTCACGCCCTGTGTGCCGTCTACGAAACCTGGGTGCCCAAGAACAAGATCATCACCACCAACACCTGGTCTTCTGAGCTCTCCAAGCTGGCAGCCAACGCATTCCTCGCCCAGAGAATCAGCAGCATCAACTCCATCAGCGCCCTGTGCGAGTCGACCGGGGCCGACGTGGAGGAGGTGGCCAAGGCCATCGGGATGGACCAGCGCATCGGCAGCAAGTTCCTCAAGGCCAGTGTGGGATTTGGTGGCAGCTGTTTTCAGAAAGATGTCCTCAATCTCGTGTACCTCTGTGAGGCGCTCAATCTCCCTGAAGTGGCGACATATTGGCAACAGGTAATTGACATGAATGAGTACCAGAGAAGGCGGTTTGCGTGCCGTATCATCGACTGTCTCTTCAACACCGTCACAGGAAAGAAAATCGCCCTCCTGGGCTTCTCCTTCAAAAAGGACACGGGTGATACACGGGAGTCCTCCAGCATCTACATCTCCAAGTACTTGATGGACGAAGGGGCCAAGCTGCAGATCTACGACCCCAAGGTGCTGAAGGAACAAATCATCCAGGATTTGTCTCACCCCACCATCTCTGAGGACAACCCTGAGAGAGTGTCCCAGCTGGTGACCGTCACCAAGGACCCGTACGAAGCGTGCGAAGGCGCCCACGCTCTGGTCATCTGCACAGAGTGGGACATGTTCAAGGAGATGGACTTTGACAGGATCTACAAGACCATGCTGAAACCAGCCTTCATATTTGATGGCAGGAGAatCGAGACGATCGGTAAGAAGGTGACGACCCCACGCATCCCCTTCACTCCCCCGACCGGAATCCCCCGGATCAGCCTCCTTGACCCCCCCGCCAAGAAGGCTAAAGCACCCAAGACCGAGACCCGCCTCCTGCGCTGCGCTGTGGAAGAGGCTCTGGATTCGGACACGTTGTTTCTCACCAGCAGAGAGGACTGA

Function

symbol description
ugdh Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Acts upstream of or within atrioventricular valve formation; determination of left/right symmetry; and positive regulation of signal transduction. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including axis; head; heart tube; mesoderm; and vestibuloauditory system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).

NR:

description
PREDICTED: UDP-glucose 6-dehydrogenase

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004625 True 1545 mRNA 0.57 13 55116637 55136087

Neighbor

gene id symbol gene type direction distance location
AMCG00004620 NA coding downstream 80685 55030260 ~ 55035952 (-)
AMCG00004621 NA coding downstream 98537 55009704 ~ 55018100 (-)
AMCG00004622 NA coding downstream 118209 54977847 ~ 54998428 (-)
AMCG00004607 NA coding downstream 408626 54699816 ~ 54708011 (-)
AMCG00004605 NA coding downstream 509810 54601459 ~ 54606827 (-)
AMCG00004627 NA coding upstream 4818 55140905 ~ 55141489 (-)
AMCG00004628 NA coding upstream 68998 55205085 ~ 55219718 (-)
AMCG00004633 NA coding upstream 88748 55224835 ~ 55270161 (-)
AMCG00004630 NA coding upstream 136256 55272343 ~ 55293024 (-)
AMCG00004631 NA coding upstream 175313 55311400 ~ 55313771 (-)
G9533 NA non-coding downstream 143 55114342 ~ 55116494 (-)
G9523 NA non-coding downstream 42262 55074046 ~ 55074375 (-)
G9517 NA non-coding downstream 96541 55019897 ~ 55020096 (-)
G9504 NA non-coding downstream 107839 55007762 ~ 55008798 (-)
G9512 NA non-coding downstream 112834 55001583 ~ 55003803 (-)
G9570 NA non-coding upstream 126838 55262925 ~ 55263287 (-)
G9593 NA non-coding upstream 210696 55346783 ~ 55357633 (-)
G9643 NA non-coding upstream 417737 55553824 ~ 55559308 (-)
G9656 NA non-coding upstream 442189 55578276 ~ 55584995 (-)
G9650 NA non-coding upstream 448961 55585048 ~ 55605575 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 196699 54915584 ~ 54919938 (-)
G9414 NA other downstream 496582 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 666296 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 743010 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 1073209 54032634 ~ 54043428 (-)
G9604 NA other upstream 231498 55367585 ~ 55420058 (-)
G9608 NA other upstream 246129 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 393563 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 601478 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 678315 55814402 ~ 55846171 (-)

Expression


Co-expression Network