AMCG00004629



Basic Information


Item Value
gene id AMCG00004629
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55314396 ~ 55336233 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00004629
GCATACTTACGGTGTCTCATCTGCCtggcacagcagcacacagccaAGCAGCAACCACTTCCACATGGTACGATCCAGGGAAAGCTGAAGCAAGAAGTGAGAAGCAGCAAGAAAGAGGAGTCGCAAATCCAGGGTGATGCAGACCAAGAAGAAAATGCTGCCAAAATCACAGATGATGCAGAGTCCATCCCCTATGTTATCAAGGGAAGGGTCTTCAAAGCTAAATATCACTGGGAGAAAGACGATTATCAGAAGGTCAGATACAAGGAGGTTGAAACTGCAGACAGAGATGGACTTGCTTTGGAAGGGATCCATGCAACAGGTTCCTTAGAAGACTTGGTGGAGAAACGTGAGAAACTGCTGAGGGTACCACAGCACTTTTCTCTGATCGGGACACAGCAACAGTCAGAGACCAGACAAGAGACTTTCTCATCATACAAAGCTGAGGCAATGTTTACAAAGGCCATGGAGAAAGTTGGATTTAACCTCACCGTTTCGGCCAAGGGTGGATTTGGAGGTTTTGGGATGGAGACTAGCATGAAGCATAGCAGCACTTTGGAATCAGAAAAAGCACATCACTTGCAGAGAGCAAAGTCCTTCATTTCCACTCTCAAATACTGTTACTTCCCAGTAGCTTCAAGTTACATAGAAATGGATCAGCTTCACCTATCAGATGCAGCATTAAAAGAGCTCCAAAACATTGAAGCAGTTTTGTCACATGTGCCTCCATCTGAGATTACTAAAAGCTGTGAAAGATTTTTCCACAGGTTTGGCTCCCATGCGAACAAAGGCCCTATTGACTTTGGTGGAATATATTGGTGGAAAGCTACATCTGAGCAAGAGACAAGTGAAATGCAGACTTTGGCCTCTAAAGCATTAGACTGTTATGTTGGTGCCAGCTTTAGTGGTTTTGGTCTCACCTGTGGAGGTGGGGTTGATGTTAAAGTATCAGACTTAAAAGGATCATTAGCTGCCAACTATGGAGAGTCCCTTCTTAGCAGGGTAAAGCTGTCCATAGAAAAAACAGGGGGTGCATCAGAAGCTGACAGTTTTACCGGGTGGAAAGATAGCCTTGTTCAAAACAAGAAGACATGGAGAGTCATTAGCAGAGGTTTTCAGCTAGTACCTGTATGGGACATTATTCGTTCTAACCATAAAAGTGACTTCAAGGATTTCCTTCAGTTGAGTAAATGCCTTTTAGAAGCCTTTGAAGCTGAAACCAAGATCAGTgtggaaatacatttcaatgagCAAGTAATTGCGGCAGTTCATAAAGCCAAGTCGTTCATGAAAGAGATTGAAGGCTGGACAAGCTATGACTGTAAAGTAACTTTGAAGGCAGTACTCAAGCTTAAGCAGGAGCTCAATGAAGAGACGCATTCCTGTACCACATGGATAAAAATATGTCTTTGTGACCCAGCCTTTCAGAGCTTTTTAACAAGTACTGTTTCTGCCTGTAAAAATCTCCCTGCAGAGGAAACTGTTACAATTCAGGCCCAACTGAAGTGTATTTTGGTACCAGGCATTTATGAAGTAAAAAATTTCCCAAATCGCTCCACCATTATGACCTGGGTGTATCAATCTCGGGAAGAAAAGATAACTGAAATTGCAGTGCCAACATTTTCTAAATTGACTGAAATCTTGAAGAAATTAGAGGAAGATATAATTGAGCAGAAAGCATCACATGAAACTAAAATAGATGCCACAAGCAGAGCAAGTCgttcagtgtatttattatcagaaaCAATACGAGACTCGGGACAAAATGAGGAACTGCTTTTGTTGCTATCAGTTAAAACTGCTTTTGGGTATTCTGAGAAGAACAATGCATTCCAATGTCTGCTTTCTGATGTGGACATTAGGTTAATGAAACAGAAACTGGAAGAGAACTTTACCAAATATTGCAGGTTAAATACAGAATCCAAACTAAAAGcacaagcatttttatttttagcaggaTTACAAGTGGACCTTGACTATCGTTCTATCTCCCACAATGAGGCAGAACTACGGTTAAATGCAATGAAGTCTCAATTGCAGGGAACTATTGCACCTGACATTGATCAAGTCATAACACGATTTAAGAAGAGAAGCAAAACCATGAATGAACTTGAGGCAGATTTGACTGCTTTAATTAATGGAGATTATAAATCAGTGACCCCAATCAAGTCACAGGATGTGAATAAGGAGTTTGTCacagatacaaaaaatactataatGCAAAGAAATTCCGTAGAGCCCACAAACTCCACAGACattgaacaaaaccaaaagttCAAGTCTCTGCTGAACAAACTGGGGCTCCAGGATTTCTATCCTAAAATGATGCACACAACAGATGTTGTCATCATTGATAAGGCATCCCTTGATGTAAAGCAGCCACAATCAGAGCAGGAGCTTCCACTAAGATACCTTCAAAAGCTCATTATGTTGGATTATCGGATACGCTACTTAGCTGTGGAAAGTAAttctgaagaagaaaacattacaaCTCAAAGTGCAATGGAGAGTACAAATGAGTTATCAGTTGAAGATTTCTTTGGTGATATTGAATCTGAAGAGAGAGCACCACCAGATACAAAGTATCAACCTCGTATTCATCCTATGGATCTTCAGATGGCAATATTTCACTGTGCCGATGACTTTTTGAGGCAGTATCTTTTAACCAAGCTCTCCCTGTGCCAGTATGCAGTTCCTCTTCTAGTCCCTAATCCATGTAGCCCATATATAGAATTCCCTCTGTGGTCAtttcatgaaattaaaatgagtaTGCAGGTTTCTGATAATTCAACAGATAGCTACAAAGTCTGTTCAATTAACAAAGCTAAAATGCCAGTAGTATCTTTTACAAGACTTGGGTCTTCTTCATTATCCAAATCCCAGATGCTAAATATGTTGATCAACAGACAGAAACACCACACTTTCTTTCACCGGCACTGCAGCGGTAGCTCAAAAGACAGCCTTCTCATGGAAGGAGTGGTGGAGATTTCATGGTACTGCCCTGGTGGCAAAACAGACGACTTGTTTGATGAATGCATAGCATTCACAAACCTTCATGGAGATACAAGCAAACATCCCAAACAGATCAAGTTTCTAAATGAAATGACTTCCATCAATGTCATTCTCCTGTCATATTCTGATCTCAATGAAGATGGAAAAACCATTCTGAAACACTATCTGACATCTCCACAGCCACTGATCTGCCTTTGTGCGGACAAAGAAATTATTTCAACTCCACAAATAGGTACAAAGCTGAAGATAGGTGCAAAAAACAGGAATGAAGCTGAGTTTATTGAGGAGTTTTCATCAGCAATCAAGAAGTTATTAGTAATCTCAAATAAATCCCTCACACTGGAAGACTGTTTGCACATTGCAGAAACACAGGGTTTTGTTGCTGATGAAAACAGTAAAAACTGTAAGAAAGGAAAAGTCTTGGCGAAAAAAGTACTGagtgttttggaaaataagGACATATCAGAGGTGAAGGGAATGTTCTTACCTCTTCAAGGAGAAATGTGGCACAGGTGGTGCCAAAAAGACAAAGAGCTCCATCGCTTagaattgaaacaaaacagaagtattGAAGAGCATCAAAGCAcaattgaagaagaaaaaaagtcaattcGCCAAGCTCAACTGGACAAAGCATTCCCTTTGAACAACTTCATTAAGCCAATCATACAAACTCTGTATTCAGAGactgacacaacaaaaatgtatttcctgaaGTGGGTTAAGGAATTTTTGGACACATGGTCCATTGATCCTCTTATGAAGCTATACCGGCAGTATCATGATACATGGTCAGCTATTCTTTTGCTCCAAAACCAAAGTGAAACTGCAAAAACTGAGTTAACCAAAGAGATGACTTTGAAGTAG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00004629 True 3879 mRNA 0.40 4 55314396 55336233

Neighbor


gene id symbol gene type direction distance location
AMCG00004631 NA coding downstream 625 55311400 ~ 55313771 (-)
AMCG00004630 NA coding downstream 21372 55272343 ~ 55293024 (-)
AMCG00004633 NA coding downstream 44235 55224835 ~ 55270161 (-)
AMCG00004628 NA coding downstream 94678 55205085 ~ 55219718 (-)
AMCG00004627 NA coding downstream 172907 55140905 ~ 55141489 (-)
AMCG00004637 NA coding upstream 124020 55460253 ~ 55462726 (-)
AMCG00004641 NA coding upstream 278379 55614612 ~ 55628983 (-)
AMCG00004648 NA coding upstream 346219 55682452 ~ 55684986 (-)
AMCG00004654 NA coding upstream 532414 55868647 ~ 55870960 (-)
AMCG00004663 NA coding upstream 756876 56093109 ~ 56096391 (-)
G9570 NA non-coding downstream 51109 55262925 ~ 55263287 (-)
G9533 NA non-coding downstream 197902 55114342 ~ 55116494 (-)
G9523 NA non-coding downstream 240021 55074046 ~ 55074375 (-)
G9517 NA non-coding downstream 294300 55019897 ~ 55020096 (-)
G9504 NA non-coding downstream 305598 55007762 ~ 55008798 (-)
G9593 NA non-coding upstream 10550 55346783 ~ 55357633 (-)
G9643 NA non-coding upstream 217591 55553824 ~ 55559308 (-)
G9656 NA non-coding upstream 242043 55578276 ~ 55584995 (-)
G9650 NA non-coding upstream 248815 55585048 ~ 55605575 (-)
G9661 NA non-coding upstream 270694 55606927 ~ 55607416 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 394458 54915584 ~ 54919938 (-)
G9414 NA other downstream 694341 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 864055 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 940769 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 1270968 54032634 ~ 54043428 (-)
G9604 NA other upstream 31352 55367585 ~ 55420058 (-)
G9608 NA other upstream 45983 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 193417 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 401332 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 478169 55814402 ~ 55846171 (-)

Expression



Co-expression Network