AMCG00004630


Basic Information

Item Value
gene id AMCG00004630
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55272343 ~ 55293024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004630
TTTACACTGTAAATAAAGTATGTTGGGATTGACGACGAATTAATACAAACACCGGGAGTGAGAGTGTGTCCGtcgtgttgttattattgtctttACTGGAATATCCGtgacaagaaaaacacagagtCTAGTCCAGTATCCAGCTACGATGCAGTGTGAGCTGGTCAGTCAGTCCTCAAACAGTCTCTGTATCCCTCTTCCCGATGGCACAGCCGTGTTTCTCGGTAGAGGGCCGGAGTCTGGGATAGCGGACAAAAAATGTTCCCGAAATCAGGtGAAGTTAGTAGCCAGTTATGAGGAGCGGACTGTCACTGTGACCCAGTTGGGTCCCAACCCCTCCTCGCTGGGCCCCCAGGTTCTGGGGAGGGGTCAGTCAGACAGGCTCTCAGATGGCGGGACCCTATTTCTGGTCAACAGTGAACACCCCTTCAAACTGCGCTTCTCGGAGACCCGAAATGGGCCGTTGCAGCATCCCACTGCCCCCGtgctggagagagagcagaagaagaaagagcCCCACAGAGCAGTCCCTAAACGGGGCATCCCAGACTTTTTCAGCAATACTTCTAAGCAGGCAGTGAAAAGGCCTCACAGCAGTGGTCAGGAGCCCTCAGCCAAGCGGGGGCGGGCAGCAGGGTCCTCGAGTGAGGAGGATGACAGTGAGGAGCAGATCAGGGAGAAGCTGAGGAAGCTGCAGGAAATAGCTCAAGCTGCAGAGGCCCATCAGGCAAATGCAGAGCCAGCCTCTGGGTCCTCCCCCTGCCCCAGGGACCACTGGGAGGACATCGGCAAGCTGCTGCTGTTCACCTCTGCAGGGGTCACGGCCAGGTTGAAGGTGGCGGGGTTTGATATTGACGGAACCATAATCACCACCAAGTCTGGGAAGGTGTTTCCTACCAGCCCTGATGACTGGAGGATTTTGTACCCAGAGGTCCCACACAGATTGGCCCGGCTCCTAAAAGAGGGCTACAAGgTGGTGTTCTTCACTAACCAGATGGGAATCGCTCGAGGGAAACTGAAACCCGAGGTGTTCAAAGCCAAAGTGGAGGCTATACTGGCACACCTTGGCCTCCCAGTACAGGTCTTTGTGGCGACCGGATCAGGGATCTTCAGAAAGCCAGTCTTGGGAATGTGGGACTACCTGTGTGAGAAGGCTAACGACGGTGTCACTGTGGACAAGAACCAGAGTTTCTATGTTGGGGATGCAGCTGGGCGTCCAGCTAACTGGGCCCCTGACAGGAAGAAGAAGGACTTCTCCTGCGGGGACAGACTGTTTGCGCTGAACATAGGCCTGCAGTTCCACACCCCTGAAGAGTTCTTCCTTGGCTGGAAGAGCGCCACCTTCAACATGCCGGCTTTTGACCCGAGGAAGTGCGACCCCAACGCCCGATTGTACGACCCCCCTGATGCCTCCTTGACCTCAACTCAACAGGAAGTTATAATTGCAGTGGGCTTCCCTGCCTCTACACTGGAACAGGCCAAGCACAACAACAGGGTCAGTAGCCTGGGGTCAAGGTTCCGGGAAATGAGACCCTCTCGCACCCCTCATGCTCCAGTGAATGACATGGTTTTCAACAGCTACAAtttctaa

Function

GO: NA

KEGG:

id description
K08073 PNKP; bifunctional polynucleotide phosphatase/kinase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004630 True 1591 mRNA 0.55 16 55272343 55293024

Neighbor

gene id symbol gene type direction distance location
AMCG00004633 NA coding downstream 2182 55224835 ~ 55270161 (-)
AMCG00004628 NA coding downstream 52625 55205085 ~ 55219718 (-)
AMCG00004627 NA coding downstream 130854 55140905 ~ 55141489 (-)
AMCG00004625 ugdh coding downstream 136256 55116637 ~ 55136087 (-)
AMCG00004620 NA coding downstream 236391 55030260 ~ 55035952 (-)
AMCG00004631 NA coding upstream 18376 55311400 ~ 55313771 (-)
AMCG00004629 NA coding upstream 21372 55314396 ~ 55336233 (-)
AMCG00004637 NA coding upstream 167229 55460253 ~ 55462726 (-)
AMCG00004641 NA coding upstream 321588 55614612 ~ 55628983 (-)
AMCG00004648 NA coding upstream 389428 55682452 ~ 55684986 (-)
G9570 NA non-coding downstream 9056 55262925 ~ 55263287 (-)
G9533 NA non-coding downstream 155849 55114342 ~ 55116494 (-)
G9523 NA non-coding downstream 197968 55074046 ~ 55074375 (-)
G9517 NA non-coding downstream 252247 55019897 ~ 55020096 (-)
G9504 NA non-coding downstream 263545 55007762 ~ 55008798 (-)
G9593 NA non-coding upstream 53759 55346783 ~ 55357633 (-)
G9643 NA non-coding upstream 260800 55553824 ~ 55559308 (-)
G9656 NA non-coding upstream 285252 55578276 ~ 55584995 (-)
G9650 NA non-coding upstream 292024 55585048 ~ 55605575 (-)
G9661 NA non-coding upstream 313903 55606927 ~ 55607416 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 352405 54915584 ~ 54919938 (-)
G9414 NA other downstream 652288 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 822002 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 898716 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 1228915 54032634 ~ 54043428 (-)
G9604 NA other upstream 74561 55367585 ~ 55420058 (-)
G9608 NA other upstream 89192 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 236626 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 444541 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 521378 55814402 ~ 55846171 (-)

Expression


Co-expression Network