Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004665 |
| gene name | p3h3,LOC106605089,LOC106583419 |
| gene type | misc |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 56106713 ~ 56109085 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| p3h3 | Predicted to enable procollagen-proline 3-dioxygenase activity. Predicted to be involved in collagen metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in axial mesoderm and axis. Orthologous to human P3H3 (prolyl 3-hydroxylase 3). |
| description |
|---|
| PREDICTED: prolyl 3-hydroxylase 3-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004665 | False | 201 | mRNA | 0.54 | 3 | 56107754 | 56108999 |
| TU12474 | True | 751 | lncRNA | 0.50 | 4 | 56106713 | 56109085 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004663 | NA | coding | downstream | 10322 | 56093109 ~ 56096391 (-) |
| AMCG00004654 | NA | coding | downstream | 235753 | 55868647 ~ 55870960 (-) |
| AMCG00004648 | NA | coding | downstream | 421727 | 55682452 ~ 55684986 (-) |
| AMCG00004641 | NA | coding | downstream | 477730 | 55614612 ~ 55628983 (-) |
| AMCG00004637 | NA | coding | downstream | 643987 | 55460253 ~ 55462726 (-) |
| AMCG00004664 | NA | coding | upstream | 4320 | 56113405 ~ 56115924 (-) |
| AMCG00004662 | NA | coding | upstream | 38402 | 56147487 ~ 56162331 (-) |
| AMCG00004671 | NA | coding | upstream | 76132 | 56185217 ~ 56212864 (-) |
| AMCG00004674 | NA | coding | upstream | 292376 | 56401461 ~ 56409291 (-) |
| AMCG00004677 | NA | coding | upstream | 301900 | 56410985 ~ 56414424 (-) |
| G10007 | NA | non-coding | downstream | 37851 | 56066549 ~ 56068862 (-) |
| G9794 | NA | non-coding | downstream | 70764 | 56033498 ~ 56035949 (-) |
| G9751 | NA | non-coding | downstream | 208651 | 55897856 ~ 55898062 (-) |
| G9719 | NA | non-coding | downstream | 326106 | 55779425 ~ 55780607 (-) |
| G9701 | NA | non-coding | downstream | 384700 | 55721706 ~ 55722013 (-) |
| G10034 | NA | non-coding | upstream | 20357 | 56129442 ~ 56130558 (-) |
| G10061 | NA | non-coding | upstream | 244843 | 56353928 ~ 56354406 (-) |
| G10067 | NA | non-coding | upstream | 361437 | 56470522 ~ 56471426 (-) |
| G10068 | NA | non-coding | upstream | 380483 | 56489568 ~ 56491763 (-) |
| G10073 | NA | non-coding | upstream | 406416 | 56515501 ~ 56516414 (-) |
| AMCG00004660 | LOC106605085 | other | downstream | 97847 | 56006051 ~ 56008866 (-) |
| AMCG00004652 | NA | other | downstream | 212627 | 55889982 ~ 55894086 (-) |
| AMCG00004653 | znf384l,LOC108433737,LOC107665159,LOC106605395 | other | downstream | 260542 | 55814402 ~ 55846171 (-) |
| AMCG00004649 | NA | other | downstream | 363416 | 55737565 ~ 55743297 (-) |
| AMCG00004640 | NA | other | downstream | 555488 | 55529650 ~ 55551225 (-) |
| AMCG00004672 | NA | other | upstream | 174909 | 56283994 ~ 56384870 (-) |
| AMCG00004675 | chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 | other | upstream | 341704 | 56450789 ~ 56484848 (-) |
| AMCG00004685 | NA | other | upstream | 503942 | 56613027 ~ 56752935 (-) |
| AMCG00004692 | LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 | other | upstream | 576652 | 56685737 ~ 56690492 (-) |
| AMCG00004690 | NA | other | upstream | 581634 | 56690719 ~ 56691706 (-) |
