AMCG00004682 (cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613)


Basic Information

Item Value
gene id AMCG00004682
gene name cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56494656 ~ 56511693 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004682
GACCCTGTGCAAAGACACACTTGAGACTCACTGACTGACGAACGGAGTGATTGATTGACGTGAGCCGGGGAGGCATTTCTATGGCAACGCCTTCGGCGGTGTCGTAGACAGAGAACCCGGATGTGACCAACGCCTTTTACGAGAGCCGGGAAGAAGGGAGGTTTTACCTAATTGTTCATAGAAGACACCAGTGGCTGTGCAATCCTGCCCATCACTCTGTGCTGCCACCAGTCTACAAAGCCACCTTGTGTCTGGAAGACCTTCAACTCCACCAAAAACAAGAGCTAACCTAAGACGcatctttaaaaatcatttttcattatttattgttctatatttattttccacagtgcTCAGATCAgAGATGCAGACTATAAAGTGTGTGGTTGTGGGCGATGGAGCCGTCGGGAAGACCTGCCTGCTGATCTCCTACACCACCAACAAGTTCCCTTCGGAGTATGTGCCCACGGAGGACTATGACAGACTGCGGCCACTTAGTTACCCCCAGACCGATGTTTTCCTAGTCTGCTTCTCAGTCGTCTCACCCTCCTCCTTTGAAAACGTGCGAGAAAAGtggGTCCCAGAGATCTCTCACCACTGTCCCCGGACACCCTTCCTGCTGGTGGGAACACAAGTGGACTTGAGGGACGATCCCAACACAGTGGACAAGCTGGCCAAGAACAAGCAGCGGCCGCTGTCCCCCGAGAGCGGGGAGAAGCTGGCCAGAGACCTGCGGGCCGTCAAATACGTCGAGTGCTCCGCCCTCACACAGaggGGACTGAAGAACGTGTTTGATGAGGCAATCCTGGCTGCCCTGGAGCCCCCAGAGACCAAGCCCAAGAAACGCTGCAGACtgctatagagagagagagagagagagagagagagagggagggaggaagcaagggatggggagggagagaggagtaATGAATGTGGGAGGGTGGGGACAGTTTTTGCTTCAGGAACTACCTGCCTTTTTGCAGttgatggggtgggggggggttgtattCCTGTTAGAACAAGGTGTATAGAAACAGatagtgtgagtgagagagagaatgaagcAGAGTGAGAATTTGAAAGTGTGAGAATGAGACATAGAGAGTGAATGTGTGGGTGGGAGACTAAATGAGTTTGTGAGTGAGTCTGTGAGAATGAGATGGTGAGTGAGTGATACAATTGAGAGAGAGCTTAATACAGAgccaggagagggagagggagtgtgtgaaaGAGCGGTTGTACAGTACTAGGAGTTGAAGTGCAAATTAGTTGTGCAGCCCCTAACTGACAGATAGGGGGGTAATACAATGATAGAGAGAGAGTAGTTTACAGTTAACTCCCACAACTGTACCAGTCAGAGAGAGGGttagtacagagagagagggttaatacactATAGACAGACATGTATACAGTCCTTATGTGTGAGAGGGGGGAGTTAATACTCTGGTaactgacacactaacacacacacactggtttcTCAATGGCATCTTGTCAGAAGTTTCTCTGTTGAACTGCTGATTCAGGGCCAGAGAGATAACTGTACACATTCCAGCTGACTGGACCTAGttagggggagaaagagagctCATATTACATTAATAGAGTGAGTGTGCGTTTTACTGTTAACTGACATTTTCTGtccatttgagagagagagaactgctCTATCTTTCAGATGGACAGACTACATTTGAATCCTTCAGAGcaactccctctctccccacagtGTCTATACTGTACAGTGAGGTTACACTGCCTCTCTGTGTCCAGGAGTCTGTGGTATGAGTACATAGTGACCACAACTGACACCACTGACAATAAATTGATCCAGCGGCATCCAGAtagtccattttgttttgtccctctctctccatctctgcagTAGTACAGTCCAGTCAGTGATTCTGCAGCAGCAAGCCAGTTTAGTCATTGACTCTACAGCAGTAGTACAGTAGTCTTTATAGCAGCAGTACAGTATGGGCACTATAGAAGCAGTTCAGTACAGTAACTAGCAACATTACAGTGGTCAGTGACTGCAgcagctgtactgtactatCCCGCAgtgcacaatactgtactaCTCTACTGCCTTGTAGTTTACGTTGACATTTTACTGTACTTCACTATACTGTAGAGTTCTGTGGTAAACTATACTCCCTGTACTACACTGTAGGTTAGTGCAATAATGGTgttttctgtactgtactgcactatactgatgtgtactatactgcactgtaatatagtattatactgtacagtactatagtaaactatactgtactgtggaGCAATAAGGGTATACTGATCTGTACAATACTGTAGTGACTGCAAATGTGAATGTAATTTACTGTGCACATTTTTAACCAACTAACtagaaaactacatttcccatgaGGCTTTGCAGCTATACCCCAGTCTACTGTACTCTGTACCTGTTCATCATGAGGGCTGTAGTCCCCTGGCATGCTTCAGTTTTTCCTTTACTCTGTACTGCTCAGCGAATGATGAAAGCTCATTAGTTAAAAAGGCAAATCAGTTAAATGAAGAGTTTAAGTACTTGAGAACTCAGTGTGAGAAGAATATTAAGACGGTGGCTGAGGCATAGTAGTAGACTCAATGGAACATCCTCGTGGCTTCTCTTTAGACTTGCGATTTCCTCACCCTTATTCCTGCCACTACCTGCCTATACAAGCGGTTGGTTAGCCTCGCTAGCGTTAACTGGGGTGTCTGTTTTCTCAATTAAAGCTGTTGACACTGTGCTCATGGGAAAGCAGGACGCACCTGCTCCAGATTCACTAACGAGGGAGCGACAAACACTGAGTAAGGGTAAAGGGCGTTGATTTTCCTCAgaattatggttttgttttactatGTTAAAGGGCAGTCTCCTTTGATGGTATTCCTTTGATAGAATAACAGCAGGAAAGACCCCTGAAGTCTCCATAGACACAGAATGGGaacaaaagtttttttgtttgttttttaattttcttgccGCCTAGTGTACAGGAACTGGAACTGCAGGCATGTCGTCTGTATCTGTGTACATGGCAGACCATGTacttctcccctctctctgggtCATGCTCTCTCTGCTGCACTCTAATGGTGAACTGAGAGAACTGCACCCCATGTATTAATGTTAAATGATATGAATATAGTTGTCTTCTCTGTCCTGTGTGGAGGTGAGGTCGGGGCAGGGAGGGGGTGCAAGGAACTATagattctatttttgttttgctgagaGTCTGTAACACAAGGGGGGGAGCTGGAATGTTCTTAGTAGCAACAATGGAgtgatattaattataataaccataaggatgatttttttttttttttttgggtggctGTAATCAAAgaa

Function

symbol description
cdc42l Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including Cdc42 protein signal transduction; cell projection assembly; and endocytosis. Predicted to act upstream of or within cell division and small GTPase mediated signal transduction. Predicted to be located in midbody and plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in fibrosarcoma. Orthologous to human CDC42 (cell division cycle 42).

NR:

description
PREDICTED: cell division control protein 42 homolog

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004682 True 3376 mRNA 0.46 6 56494656 56511693

Neighbor

gene id symbol gene type direction distance location
AMCG00004676 NA coding downstream 51700 56424588 ~ 56442956 (-)
AMCG00004678 NA coding downstream 71750 56417056 ~ 56422906 (-)
AMCG00004677 NA coding downstream 80232 56410985 ~ 56414424 (-)
AMCG00004674 NA coding downstream 85365 56401461 ~ 56409291 (-)
AMCG00004671 NA coding downstream 281792 56185217 ~ 56212864 (-)
AMCG00004684 NA coding upstream 141489 56653182 ~ 56655085 (-)
AMCG00004691 NA coding upstream 186628 56698321 ~ 56702513 (-)
AMCG00004693 NA coding upstream 193651 56705344 ~ 56705814 (-)
AMCG00004689 NA coding upstream 224150 56735843 ~ 56738249 (-)
AMCG00004698 NA coding upstream 313328 56825021 ~ 56836934 (-)
G10068 NA non-coding downstream 2893 56489568 ~ 56491763 (-)
G10067 NA non-coding downstream 23230 56470522 ~ 56471426 (-)
G10061 NA non-coding downstream 140250 56353928 ~ 56354406 (-)
G10034 NA non-coding downstream 364098 56129442 ~ 56130558 (-)
G10007 NA non-coding downstream 425794 56066549 ~ 56068862 (-)
G10073 NA non-coding upstream 3808 56515501 ~ 56516414 (-)
G10082 NA non-coding upstream 16923 56528616 ~ 57019807 (-)
G10093 NA non-coding upstream 94728 56606421 ~ 56647806 (-)
G10083 NA non-coding upstream 171444 56683137 ~ 56894619 (-)
G10108 NA non-coding upstream 200696 56712389 ~ 56714188 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other downstream 9808 56450789 ~ 56484848 (-)
AMCG00004672 NA other downstream 109786 56283994 ~ 56384870 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 385571 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 485790 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 600570 55889982 ~ 55894086 (-)
AMCG00004685 NA other upstream 101334 56613027 ~ 56752935 (-)
AMCG00004692 LOC103030083,LOC107394826,LOC101069563,LOC101467164,LOC101164413,LOC106519597,LOC108443584 other upstream 174044 56685737 ~ 56690492 (-)
AMCG00004690 NA other upstream 179026 56690719 ~ 56691706 (-)
G10115 NA other upstream 236098 56747791 ~ 56750963 (-)
G10079 NA other upstream 260809 56772502 ~ 56775440 (-)

Expression


Co-expression Network