AMCG00004685


Basic Information

Item Value
gene id AMCG00004685
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56613027 ~ 56752935 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004685
ATGTCCCGGACGATTCTTCTGCTGTTGGGAGCCGCTCTGTGGGCTACAGggtcaaaggtcacccGGGAGGGGCGGAGCCTGGAGCTGGTCGCTGTAGTGCctgaggagagagggagcgtgTTCTCCTGTGTGGTGCACCACCACGGAGACACAGGGACAGCTTCGCACACGCTGGCAGTCAGAGGAATCATGTCCCCCGCGAGAGACAGCACCGTGTTCGTGGCTGTGGGGGCGGCTGTGTCCCTGCCCTGCGTCTTCACCGAGGCGCTGTCCGCGCAGCAGAGCggctgggagagggagacagagggggCAGTCTCTCCTGTCCTCCGCCCCTCCTCCCTCGCTCCCTTCTCCTCCCAGGACGTGTCTCTCCAGCTGGCGGTGGCGGAGGAGAGGGATGCCGGGATGTACCGGTGCTACGGACAAGTGGAGGGGAAGAGGGTGGAGAGGAGGGTGCGGCTGGTCACTGCCAAAggtgaggaaaagaaggagggagaggagaagggagAAGGGGAAGAGCGaatgagtgagagagaaagagagggggagggaggcagaCAAATCTCGGTGACGACCTTCCCCCTCACCCTGACCTGTGAGCTCAGCAACAACACGGGGGTGCAGAGATACGAGTGGAGCCACGTGATCTTTGACTCCAACGGGACCCGGCTGGTGACCCCGCTGACCTCCGGTCCCAGTAACAGCTTCCTGGTCACAGGGAGACCACTGGCAGCCTTGGCAGACaggcaacaataa
>TU12542
cagtcagtcagtgttaatgtactgtagtgtccagtcagtcagccagtgttaatgtgctgtagtgtccagccagtgttaatgtgctgtagtgtccagtcagtcagtgttaatgtgctgtagtgtccagtcagtcagtttgtcTATAGTGttttatctccctctctctctctctctctctctctgtctctctttttgcAGCGAGTGATGATCCTGCAGTACCCAGCATTAGAGACAGTCATTCACTCCTCATTCCCTCGCTCCTCCCCTACGAGGGAAGACAGGAAGAAAGTGACAGAAGCTGCAGCCTGCGCAGACGTTTaactcccctctccctccttctcctggCCATCGTCTTGCCAATTGTGGGGTTTCTGTTGGCACACTGTTGGCAAAATTCCCCAATGCAACATAGCATCTAAAAAGATTCAAAATATCAAGTTTTGGTCTGCTATACTTTTGACTGGCACACTGTTGGCACACACAACATACCGTTGGCAGAAAGTTGGCTCAGTGGAAATTACCCCCACACcataaaaaacagcagaaaattATCACAGCTTCTAACTGTAGCATTTCCGTTGCAGACCACTGGCAGCCTTGGCAGACaggcaacaataataataatacttttattttttaatattatcacaatatttttttcttctggaaatcgtaaaatttgtattgaaaaaatatccttttatattacatttgtgttttacacattaagaggcacaatcaatgtttttcatttctaacTCTAACTGTTTCTAACTGCCATTTGGACTTGACAATGAATTATCTTCCTGTCTTCCTGTCTGttgaatcattattattattattattattattattattattattattattattattattattattaatgttcttGCGTGTGTAATACCTGTATATATTAATGGctctttttgtttcatttgtgttattaataaaaatctGCGTTGAATAAcctgttttcaaaaatattaaatcgcTTTTGGTTGGTCAGACTAGACTGGCTTCAGTGGAATCTTGTCAGcaatttgtgtgtctgtgaaacaCACTGATTCAGCCCAGAGAGACGACTGGACACATCGCAGCTGagtggatagagagagagagagagagagagagagactgtataGAGAGACTGTGGGACACTGTAGATGCTGTAGAGAGAGCAGGGAGAGTTTgggctgtgctgcagtgtgtcgaTCTCACCACACGAGGGAGACAGAATACAAGAGGACGTTCACCATTAGatagagagaatgagagagaggcgGAGGGAAAGGGAGTGAGCCAAACTCAAAATGGAGGACGGAagtgagtgacagagagacagaaagaggaaTAATAAAGCAATGTGCAATGTGTATAGCAGTTACAGTGCTGTAGAGTATAGCATTATATTACAATACAGATACTGCAGTTTAGTGCATTATAATGTAGTACAATACagttaagtttaaaatacaagGGCAACCAACAGTTAAACacatagtatagtacagtgaaGTGTAGTATAGAATAGTACAGTATTGTATAGTAAAGttttttacagtacagtgtgttttatagtacagtacagcaaagtaaaatacatcATAGTACAGTTTAGTAAGGCACATTGTAGTATATTATAGGGCAGAATAGAATGGGACTGTACATTACACTAAAGTATAGTGATAAACaatacagtatagtgcagtataatagTTTGATATAGACCAGTAGGGTGTAGAATAGTACAGATGAGaaaagtatagtatagtacagaaCAGCATAGTATAGCACAGTACAATGCAGTgtaatatagtacagtatagtttAGCACTGTACAACTACTGTGAGAAATAATAGTCTTGTCACACAGTCAGTGATGGAAAGAGATTTActtgaaatcaataaaatgaattgTGACTTAGCCCAATAACTCACCGATCACAGAGCATCACAGACATCAGAACTGCCACTCACCAATCATTGTACCTCATTAACGAGCAGTTTCTAAATCACTCCATTCCTGGAAAATCAATTGAGCAGCACAGATCTCCTATGCAGAGCAGGGCAAAattattcagtcagtcagtgtgccagcagtcagtcagtcagtatgccagtcagtcagtcagtatgccagtcagtcagtatgccagtcagtcagtatctcagtcagtcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtcagtcagtatatcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtttgcCAGTCAGGCAGTGAAAGTGAGAGCGCTGGTCTCACAGATGGCTGGGTACAGGAATTCACAGGGGACATCGTGCCAGGAGCGCGTGTGTGAGTTGAGTACAGCGCAGTCTTCCCCATGGAGACCCCCAGACAGGTGGTTATCAGGCTCTGTGTCTGC
>TU12544
CTCGTATTGAGTTTATTGAAGGCGAGTATAGTTTACATGCGTCAACGAAACAGCGAAAGAACTGTCCAATAGCAGCAACAAAACTGGCTTTTAATGTCCATTGTAGTGAATATTCTTTTCCCTtgaaactgcttttaaaatgaattcttctctcttcttaatgcaactttttttttacttttttaatattctaaataattatatttgtattcattattatcatgagtttattactattgttttcGATATCTTACAAgataatgttttgcatttctccAAAAGTGGCACACGCACGCCCACGCACACAAAACGCACACGCACGCAAAATGAGGCCGTGTCTCGCTCCGGGAACAGGAAGTAGGAAACGGGAAACAGGAAGTTGAGGGGCAAAAACCACGactacaacaataaacaaacagccAACAAAACGATTAAAAAACCcctgcaaaataatatttttttttctagaatgtttttctttttgtggggggaggggtgggtcAGATATGATATTATGAATGTACTTTAATGTTATGcgttttaatttatatgtgtgtgtctctctctatatatacacacacacataaagttTATGTATATGGGGCTGAAAACTGGTCACCAAATGCAAACAGGAGAATGGCACAGACACTAGACACCACAAGAGATCATGAGAGAAAAGTGTGTTTTGGAGGAACAGCAAGAGACAGACTGACATATTTAGTGGAAGAGTGAAGATGCACTGAGAGGAGAATGTatcagagagggagggaggggaggaaaaCGGAGAGAGAGCGGagagagagagactgtataGAGAGACTGTGGGACACTGTAGATGCTGTAGAGAGAGCAGGGAGAGTTTgggctgtgctgcagtgtgtcgaTCTCACCACACGAGGGAGACAGAATACAAGAGGACGTTCACCATTAGatagagagaatgagagagaggcgGAGGGAAAGGGAGTGAGCCAAACTCAAAATGGAGGACGGAagtgagtgacagagagacagaaagaggaaTAATAAAGCAATGTGCAATGTGTATAGCAGTTACAGTGCTGTAGAGTATAGCATTATATTACAATACAGATACTGCAGTTTAGTGCATTATAATGTAGTACAATACagttaagtttaaaatacaagGGCAACCAACAGTTAAACacatagtatagtacagtgaaGTGTAGTATAGAATAGTACAGTATTGTATAGTAAAGttttttacagtacagtgtgttttatagtacagtacagcaaagtaaaatacatcATAGTACAGTTTAGTAAGGCACATTGTAGTATATTATAGGGCAGAATAGAATGGGACTGTACATTACACTAAAGTATAGTGATAAACaatacagtatagtgcagtataatagTTTGATATAGACCAGTAGGGTGTAGAATAGTACAGATGAGaaaagtatagtatagtacagaaCAGCATAGTATAGCACAGTACAATGCAGTgtaatatagtacagtatagtttAGCACTGTACAACTACTGTGAGAAATAATAGTCTTGTCACACAGTCAGTGATGGAAAGAGATTTActtgaaatcaataaaatgaattgTGACTTAGCCCAATAACTCACCGATCACAGAGCATCACAGACATCAGAACTGCCACTCACCAATCATTGTACCTCATTAACGAGCAGTTTCTAAATCACTCCATTCCTGGAAAATCAATTGAGCAGCACAGATCTCCTATGCAGAGCAGGGCAAAattattcagtcagtcagtgtgccagcagtcagtcagtcagtatgccagtcagtcagtcagtatgccagtcagtcagtatgccagtcagtcagtatctcagtcagtcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtcagtcagtatatcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtatctcagtcagtcagtcagtcagtcagtcagtgtgtcagtcagtcagtcagtgtgtcattgtatcagacagtcagtgtgtcagtgtgtcagtgtggattGGTGTCTCTGTGACCTTCAGCCTCCTCTTCTTTCTCCACATGACCCCAGTGAGGatgaggagggagaggaggagaaccccccccaccacgATACACAAAATAATCCACAGGGGCATCTGCAGCACTGAAGTagagcctgagagagagagagagagagagagagagagagagagagagagagagagagatagagtgagtgagtgagagagg

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004685 False 756 mRNA 0.63 5 56666929 56672648
TU12542 True 2464 lncRNA 0.40 4 56665059 56752935
TU12544 False 2258 TUCP 0.33 4 56613027 56694612

Neighbor

gene id symbol gene type direction distance location
AMCG00004682 cdc42l,LOC108433756,LOC108272678,LOC107552852,LOC105025850,LOC103039613 coding downstream 101334 56494656 ~ 56511693 (-)
AMCG00004676 NA coding downstream 170071 56424588 ~ 56442956 (-)
AMCG00004678 NA coding downstream 190121 56417056 ~ 56422906 (-)
AMCG00004677 NA coding downstream 198603 56410985 ~ 56414424 (-)
AMCG00004674 NA coding downstream 203736 56401461 ~ 56409291 (-)
AMCG00004698 NA coding upstream 72086 56825021 ~ 56836934 (-)
AMCG00004699 NA coding upstream 93748 56846683 ~ 56853046 (-)
AMCG00004697 NA coding upstream 103421 56856356 ~ 56858606 (-)
AMCG00004704 NA coding upstream 144668 56897603 ~ 56910267 (-)
AMCG00004706 NA coding upstream 180462 56933397 ~ 56956495 (-)
G10073 NA non-coding downstream 96613 56515501 ~ 56516414 (-)
G10068 NA non-coding downstream 121264 56489568 ~ 56491763 (-)
G10067 NA non-coding downstream 141601 56470522 ~ 56471426 (-)
G10061 NA non-coding downstream 258621 56353928 ~ 56354406 (-)
G10034 NA non-coding downstream 482469 56129442 ~ 56130558 (-)
G10116 NA non-coding upstream 90 56753025 ~ 56754391 (-)
G10084 NA non-coding upstream 9110 56762045 ~ 56820786 (-)
G10135 NA non-coding upstream 107402 56860337 ~ 56861643 (-)
AMCG00004675 chd4,LOC107724784,LOC107671917,LOC107714608,LOC107704911 other downstream 128179 56450789 ~ 56484848 (-)
AMCG00004672 NA other downstream 228157 56283994 ~ 56384870 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other downstream 503942 56106713 ~ 56109085 (-)
AMCG00004660 LOC106605085 other downstream 604161 56006051 ~ 56008866 (-)
AMCG00004652 NA other downstream 718941 55889982 ~ 55894086 (-)
G10079 NA other upstream 19567 56772502 ~ 56775440 (-)
G10121 NA other upstream 24191 56777126 ~ 56778469 (-)
G10123 NA other upstream 35817 56788752 ~ 56792161 (-)
G10157 NA other upstream 272602 57025537 ~ 57028915 (-)

Expression


Co-expression Network