AMCG00004701 (LOC103393816,LOC101468857,LOC106519603)


Basic Information

Item Value
gene id AMCG00004701
gene name LOC103393816,LOC101468857,LOC106519603
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 56915322 ~ 56926198 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004701
ATGACTCAGATGCTAcccagagagaaggagagagagaaggagagagggatgtaCTGGAACATACTGATTAGTATTCTggtcagagagagggaggaagggagggaggaggggaaggggagtgggggagggggtgaggAAGCCACGGAGGCAGTTCCAGTTGGACGGAAGGATGGAGAGCAGctctctaTGGAGGACACTACCTCCATCCTGCCCCGATTAAAACGCAACTCCAACACTTACGGCATCGGCGCTCTGGCCAAATCCTCGCTGTCAGGTGTGTCTCGCACCATGAAGGATCATGTGACCAAGCCCACAGCCATGGCCCAGGGCAAGGTGGCCCACATGATTGAGTGGCAGAGCTGGGGCAAGCCATCGGCAGGGCCCGGGGGGGGGGTGGGCCGCACCAATCTGCACCGCGAGAGGGAGCGGCGGCTGGAGAACGACGCGTACTCTGACCTCAGCGATGGGGAGAAGGAAGCGCGGTTTGCTGCAGgagtgATGCAGCAGTTTGCGATCTCCGAGGCCACGCTGCTGGCCTGGTCCTCCATCGACGGCGAGAGCCTGAGTGCCGGCTCCAACCAGGGCAGCGTGGCACACCTGAGCGAGGTCAACCAGGAGAGCGTCACCAGTCGCGACCAGATCCTGCACCACTCCTCGGCTGACGTGTGGCCGCACACCTACGTCTCGCAGGGCCTCTACTGCCTCAGCTCCTCCGACGCCTGGGAGCCCATGAGCAACGAGCAGTCTGGCGTGGCCTCCCCCGCCGCAGGCTCCTACGTGTTGGACAGGCTGAGTCAGACACAGTCCCTCCAGGCCACACCCAACAGCACCATCCACAGCCAGCAGGCCCCGCACGCACACACGCCATTGGTGGACCTGTGGGGAGTGGCACCAGCGGAGGCCTATCAGGCAGAGGTGGGCGGCTACGTGGGCATGTCTGTCGGGGAAGGGGGCGTGGCCATCGGGGAGGAGCCGTCGGTGGAGAACGAGCCTCTGTTGGAGAAGGACACGTCACAGgaagaggaagaggacaCATTGTGTCGGGAGACAGAAACAGTGACTCCGTCTCGGGAGGAAGCTGTCGCTGTCGCTGGGGGTAACAGCCCCGGAACAGCGCCCGGGGAGTCAGTCACTGACAGGAAGTCCTCTGATGTCACTTCCTGTGCCATCCAGTCCctgcaggaggaggaagagacaGGGGAGGGCTCTGCTGTTGTCACGGCGACCAACTAa

Function

NR:

description
PREDICTED: uncharacterized protein LOC103393816 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004701 True 1233 mRNA 0.63 8 56915322 56926198

Neighbor

gene id symbol gene type direction distance location
AMCG00004703 NA coding upstream 28524 56878405 ~ 56886798 (+)
AMCG00004696 NA coding upstream 71592 56841116 ~ 56843730 (+)
AMCG00004694 NA coding upstream 94533 56814414 ~ 56820789 (+)
AMCG00004687 NA coding upstream 136896 56775205 ~ 56778426 (+)
AMCG00004688 NA coding upstream 185489 56724853 ~ 56729833 (+)
G9941 NA non-coding upstream 15409 56846054 ~ 56899913 (+)
G9958 NA non-coding upstream 61471 56852941 ~ 56853851 (+)
G9957 NA non-coding upstream 63183 56849372 ~ 56852139 (+)
G9932 NA non-coding upstream 141604 56765053 ~ 56773718 (+)
G9930 NA non-coding upstream 156076 56758684 ~ 56759246 (+)
G9978 NA non-coding downstream 33036 56959234 ~ 56959738 (+)
G9988 NA non-coding downstream 89683 57015881 ~ 57019723 (+)
G9989 NA non-coding downstream 99314 57025512 ~ 57027870 (+)
AMCG00004702 NA other upstream 19107 56664140 ~ 56896215 (+)
AMCG00004700 NA other upstream 48191 56861354 ~ 56867131 (+)
AMCG00004695 gapdh,LOC107596669 other upstream 113430 56785852 ~ 56801892 (+)
G9889 NA other upstream 373259 56538254 ~ 56542063 (+)
AMCG00004681 NA other upstream 415738 56490093 ~ 56499584 (+)
AMCG00004707 NA other downstream 35315 56961513 ~ 57002024 (+)
G9982 NA other downstream 60708 56986906 ~ 56987644 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_09026732_09050431 NA coding CI01000016 null 9026732 ~ 9050838 (+)