G8335


Basic Information

Item Value
gene id G8335
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 49984505 ~ 49988218 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10287
tgcatttaaaacagacatctggcttttattttcaaggaataattttacacagaaaatacaatacacttaATCCCATGTCAAGATTTGGTTTTAGATAAGTTTCTTTTGTCAGAACTGATTTTCAAGTTCATATTCATTACTGAGGTTTGAACTGAATATCAGAGTCCTAGACCAGGCAAAAATTAGATGAAAATaattgagagaaaataaataaatacatcataatttTATATTGCACTTTCAACACCCCTTGCTGCCTGGAACAATGCAAGAGTAGTAATAAAATAGctgtttttttgcattatttgattTACTTGATAATAAAAGTAATGTAGCCTCTGGCCACATgtaagattttctttttttttttttttttacagtgtatttggGAAAAGATGCGTCAGTCCACCATTTGAGATTAACCCCCCAAATAAGACAGAATGCCTCAATTTTATATTTCCACAGAGAAAAGGATGGACAATATTGGAATAACTCAgttaaaaaaatgctaatacACAGCACTCTCCTTCAACAGCACATATTTTATTGGATCCCAATGAGAGTTGGAAATGGTGTCGAGTTAATTTACAAAGCTCAGCAGAAAAATTACACAGAACAGTTCGGGTTTACACGTTGTATCCTATGAGGCTGCCTTTGCCGATGATCTCTCCAATGTAGAACCATAACAGCACCTCTGTAGCAACCAGACCGTTCCTCAGGGCATCCTGGGAGAAAGATAAAGGAAACGTTTAGGTCAACAACAAACCActtatacaaagaaaaaaaagatcaaagtaTTTCAGACTTATATTTGAATGCTGGGAAAACGAAAATCCATCAAATGTGATACAGCACAATGACAGCCATGGCCCTTTATGGTCCACCGGTGGCGTTTCTCTCTGCAACGTATACCTTGACTGTGATCTGGGAGAGACGGCCAGCCTGGAAGGATTTAACCAGCCCCTTGGCACTCTCGATGGCCTGGGGGATCTCtgcaggggtggggggcacCAGCTCAACCCGGGCGTAATGCCAGAACGTTGCAAGCCGCGGCTTGGAGTAAGTAACAGCAGCGGAGAGTTTCTTCATACATCTCAGTCTGGCCTAAGGATGAAAACCTGCAGAAAAGATGGTTAGACCTGTTAAAACAATTGAACAACTAAAGAGCGCTCACCGCCTATGAGTTTAGGTGTCTTGGTGACCACGTTTTTAACGAGTTTCTGCGCCGCCTGAGCCATGATGTCCAGTAagatttgattattatttctttacaaaacaactCCCAGTCCCTTTTCCCGGTGCCCAATCTGCCTGCACTGAATGTCACCTCCACTGCAAGGACCCAGTGAATTTTGGCGTCTACCCATCTGCCTGAATTAAAACCGAATGCCTATTGCCATTTAAGTCACAACCAACTATACAGCGCGCCAAATTAACTGCGCTCCACTGGGTTGGttggatacatttttgttattattgtaagtaTTGTTCTATATcattatgaatatgaatgaattGGTCTTTGGGGGAACTCAATCTGTCAGGCATTTTCATGGGCATTC

Function

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU10287 True 1562 lncRNA 0.40 3 49984505 49988218

Neighbor

gene id symbol gene type direction distance location
AMCG00004447 NA coding downstream 142985 49839535 ~ 49841520 (-)
AMCG00004445 NA coding downstream 150765 49831199 ~ 49833740 (-)
AMCG00004446 NA coding downstream 161595 49820555 ~ 49822910 (-)
AMCG00004444 NA coding downstream 188321 49775924 ~ 49796184 (-)
AMCG00004440 NA coding downstream 212227 49768277 ~ 49772278 (-)
AMCG00004456 c1qtnf5 coding upstream 54041 50042259 ~ 50048074 (-)
AMCG00004460 cbl coding upstream 156492 50144710 ~ 50157745 (-)
AMCG00004461 cbl,LOC102793573 coding upstream 181858 50170076 ~ 50182056 (-)
AMCG00004465 NA coding upstream 200474 50188692 ~ 50197647 (-)
AMCG00004466 NA coding upstream 243056 50231274 ~ 50234343 (-)
G8309 NA non-coding downstream 32971 49950850 ~ 49951534 (-)
G8308 NA non-coding downstream 35974 49947883 ~ 49948531 (-)
G8307 NA non-coding downstream 38697 49944298 ~ 49945808 (-)
G8286 NA non-coding downstream 126050 49844582 ~ 49858455 (-)
G8281 NA non-coding downstream 170451 49811378 ~ 49814054 (-)
G8338 NA non-coding upstream 1054 49989272 ~ 49989482 (-)
G8341 kmt2a,LOC107601691 non-coding upstream 21562 50009780 ~ 50010015 (-)
G8342 NA non-coding upstream 22698 50010916 ~ 50011421 (-)
G8343 LOC107718271,LOC107690455,LOC107585544 non-coding upstream 24926 50013144 ~ 50013381 (-)
G8345 NA non-coding upstream 26172 50014390 ~ 50014752 (-)
G8310 NA other downstream 34913 49948861 ~ 49949592 (-)
AMCG00004429 NA other downstream 559323 49411207 ~ 49425182 (-)
AMCG00004420 NA other downstream 999194 48940024 ~ 48985311 (-)
AMCG00004412 zbtb16,zbtb16a,LOC107703518 other downstream 1503790 48463181 ~ 48480715 (-)
AMCG00004403 cadm1a,LOC107548188,LOC107715321 other downstream 2677916 47048124 ~ 47306589 (-)
G8340 NA other upstream 16914 50005132 ~ 50008694 (-)
AMCG00004457 rnf26 other upstream 78180 50066398 ~ 50071941 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other upstream 221765 50209983 ~ 50225826 (-)
G8501 NA other upstream 682848 50671066 ~ 50673375 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other upstream 722621 50710839 ~ 50720925 (-)

Expression


Co-expression Network