G8542 (foxred1)


Basic Information

Item Value
gene id G8542
gene name foxred1
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50723867 ~ 50725353 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10541
AGCGGATCCTTTTACTTATGGATGTGTCTAGATATGTGTGGGATATCTGTGCTCTCTTGATCGACAATGCTTGTGTCCTTCTGCTTAGTATTCCCAGGCGTCAACAGTGTTGTCTGCCGGAGGGATCCGACAGCAGTTCTCCATGCCCGAGAACATccacctgtctctctcctccgcGGAGTTCATGAGGAACATCAACGAGCATCTTGATGTGATGAATGAAGATCCGGTCGATTTGCAGTTTAATCACTCAGGGTATCTCTTCCTTGCAAGTGAAAGGGGGGCAGAGTTGATGGAGGAGAATTATCGCACACAgagATATGCAGGAGCAAAAGTTGCCCTTTTCTCACCAGCGCAGCTGAAGGAGAAATTTCCCTGGATCAACACAGATGGAGTGGCGTTAGCTTCATATGGTAat

Function

symbol description
foxred1 Predicted to enable oxidoreductase activity. Predicted to be involved in mitochondrial respiratory chain complex I assembly. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 19. Orthologous to human FOXRED1 (FAD dependent oxidoreductase domain containing 1).

NR:

description
FAD-dependent oxidoreductase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10541 True 418 TUCP 0.48 3 50723867 50725353

Neighbor

gene id symbol gene type direction distance location
AMCG00004475 NA coding downstream 63531 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 433128 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 437879 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 489524 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 526220 50188692 ~ 50197647 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 90369 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 132593 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 295985 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 753437 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 779115 51504468 ~ 51508828 (-)
G8541 NA non-coding downstream 1555 50721179 ~ 50722312 (-)
G8524 NA non-coding downstream 29064 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 41905 50681630 ~ 50681962 (-)
G8500 NA non-coding downstream 49314 50668946 ~ 50674553 (-)
G8370 NA non-coding downstream 588136 50127772 ~ 50135731 (-)
G8550 NA non-coding upstream 23665 50749018 ~ 50752724 (-)
G8552 NA non-coding upstream 30040 50755393 ~ 50756726 (-)
G8601 NA non-coding upstream 285465 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 1121559 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 1333383 52058736 ~ 52059501 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 2942 50710839 ~ 50720925 (-)
G8501 NA other downstream 50492 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 498041 50209983 ~ 50225826 (-)
AMCG00004457 rnf26 other downstream 651926 50066398 ~ 50071941 (-)
G8340 NA other downstream 715173 50005132 ~ 50008694 (-)
AMCG00004481 NA other upstream 5610 50730963 ~ 50738516 (-)
AMCG00004505 NA other upstream 1217340 51942693 ~ 51954532 (-)
G8760 NA other upstream 1340173 52065526 ~ 52065882 (-)
G8761 NA other upstream 1342700 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 2125130 52850483 ~ 52874108 (-)

Expression


Co-expression Network