G8552


Basic Information

Item Value
gene id G8552
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 50755393 ~ 50756726 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU10563
agagagaggcagtttGAAGAGCAAACTCATTAAATTCCCCACCTCTATTAATGATTGATTAAGGAAACTGCcaacgaaaaacaaaacaccgaGACTCACCATAAACTCCACACTAACCCAATCGTCTCAACTTCCCATTTCAGAAAAGGTCTCCTTGTTTTAAAAACCCCTTTCTTAGCAGAAGCTTAAACTACAACAGATACAAGTACACACAGTACATACAATAcaagaagaaacaaagcaaacactttattttcattgctttaCACCAAACTACTGTACAGTTTCAAACATATGCCGAGGAATCCTGACAGCGCTTGTgggtttttggtttggtttcgcTCAGCTACAGTATCGCCTGCAACTTTGCCATGGAATCTGGCGCACCATCTGTACAAATCTTCTTTCCAGGCGGTTGCTGcctaacttatttttttaccatgtttttgGTTTATACGCACAGTTCAATGATTGTTTTGTGTCTCAATTCTTTTTCTTGGtattatataacaataaaaagtaaaccaCTACATTTCCTTTTTCGAATCCTGTGTAAGGCTGTTGCTCAATGGTCAAGTTATGGGAACTCCAGTGTAACacagtgttttttgttattaatagaGTCGTGAGATAGTTGCCAAAATGGTCTGTGGAAACAAGCCACATTGATCTTGTAGCTGTGCTCATTAGCAAGTACATGGTGAAAAAGCACACTGCCGGTTTACTGTAGAAACAAATGTACCCAGAGGATTTTTCCTGTCCGTTTTAATGCAGGTTATGCAAGATGATTGTTTATCCAGTGGAGACCAGGACAAAAACTGTGTTGACTCTGAAGACCCAAAAGCTTAAAGTCCTGTTGTGCTTATCGATTATAaaacttatttacttatttacttatagATTTTTACAAAAGTGTCGATCTTCCtttgaacatatttaaaacaatttctgaCCTGTTTCAGGTGCACTTCATTGTCTCTCAGTACACATGACCTTGTCACATAATTGCACGTCTCTTACCCCAAATAACTTTAAATGTGATTACATTACTTGTAGGCTCATAGAAATGAATCACCTATTGGAAAACTTTGGACGTTCATTATCTTATCTTCATGGTCTTTTCGGCTCTTGAACCATATCAACCTGTGCAATTACTTTTGACTTGAAAATGTGTAAtcataaaaagacaaatcactAAGAATGTGTCACACTGTCAGATTGAAAATTAATATATGGGAGCCACTGATATTGTTACACATCTTTCAAGGTAAGGGCTTAAACAGTAGACAACAAATGTACTAAGCAATAAGAGAAGAAATACACTACCATAATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU10563 True 1334 lncRNA 0.39 1 50755393 50756726

Neighbor

gene id symbol gene type direction distance location
AMCG00004475 NA coding downstream 95057 50640186 ~ 50660336 (-)
AMCG00004471 NA coding downstream 464654 50289942 ~ 50290739 (-)
AMCG00004470 NA coding downstream 469405 50281745 ~ 50285988 (-)
AMCG00004466 NA coding downstream 521050 50231274 ~ 50234343 (-)
AMCG00004465 NA coding downstream 557746 50188692 ~ 50197647 (-)
AMCG00004483 kcnj5,LOC107725067,LOC107709561,LOC107558569,LOC106581095 coding upstream 58996 50815722 ~ 50838107 (-)
AMCG00004484 fli1,LOC106612965,LOC103145351 coding upstream 101220 50857946 ~ 50878635 (-)
AMCG00004487 LOC100136491 coding upstream 264612 51021338 ~ 51025994 (-)
AMCG00004492 NA coding upstream 722064 51478790 ~ 51484432 (-)
AMCG00004491 LOC100195238 coding upstream 747742 51504468 ~ 51508828 (-)
G8550 NA non-coding downstream 2669 50749018 ~ 50752724 (-)
G8541 NA non-coding downstream 33081 50721179 ~ 50722312 (-)
G8524 NA non-coding downstream 60590 50694574 ~ 50694803 (-)
G8505 NA non-coding downstream 73431 50681630 ~ 50681962 (-)
G8500 NA non-coding downstream 80840 50668946 ~ 50674553 (-)
G8601 NA non-coding upstream 254092 51010818 ~ 51011143 (-)
G8707 NA non-coding upstream 1090186 51846912 ~ 51880156 (-)
G8758 NA non-coding upstream 1302010 52058736 ~ 52059501 (-)
G8759 NA non-coding upstream 1306678 52063404 ~ 52065450 (-)
G8765 NA non-coding upstream 1334143 52090869 ~ 52091247 (-)
AMCG00004481 NA other downstream 16877 50730963 ~ 50738516 (-)
G8542 foxred1 other downstream 30040 50723867 ~ 50725353 (-)
AMCG00004480 LOC107565095,LOC104942062,LOC107576893 other downstream 34468 50710839 ~ 50720925 (-)
G8501 NA other downstream 82018 50671066 ~ 50673375 (-)
AMCG00004467 trappc4,LOC106612982,LOC107561742 other downstream 529567 50209983 ~ 50225826 (-)
AMCG00004505 NA other upstream 1185967 51942693 ~ 51954532 (-)
G8760 NA other upstream 1308800 52065526 ~ 52065882 (-)
G8761 NA other upstream 1311327 52068053 ~ 52071586 (-)
AMCG00004529 bco2 other upstream 2093757 52850483 ~ 52874108 (-)
AMCG00004533 NA other upstream 2142033 52898759 ~ 52911752 (-)

Expression


Co-expression Network