G8981


Basic Information

Item Value
gene id G8981
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 53101901 ~ 53104836 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11107
CTGTAATCCATGGTCAGAAATCAACGGGCTGTTCGGTATTGGGGCGGCAgattaaaaatttaaaacatcTGCCTCACGGTAGGCCTACTATTTATTCTATTTCACACACTCGGAAAGGCAGCGTGTGTTCGTTCAGGCGACTGTTCCTGTCCGTGCGATAAGCGCATCCCTAAAGAGCTTTGGGTCTCCCACTAACCAAGCCTCATAACTTATTAACACGTGTCAATAGTGTAAGTGTAtccgcctcctcctccatccCTTAATGGTTAAGAAAATATCAGGGGGGaaaaaccacaacacacacagactcaccaGCCACAGTGAGCTAGGCTGCAAATCAGGAAAGAAACACCAGGGAGAGACCGAGACGTTCAAATAAACCTCTTTTTAATTCTCAACAGCAAGTTAGCTTATGTGTGGTCAACATCAATGAaggtaaaatgttaaaagacTGGATCTGTCCAAAGAATGGCAACGGCAGGATTTGTGAAATGATACAAACAAACTGATAACACATTCACTATCCTTATTATcgtcagaataataataattatttataaatattgctATAATACTTCTGTACGGCATATACTGATTGACCAAAAAGCACTGTTAAGAAGCTAACTAAGAGAAGCAGCTCCCTGTTCTCCACATAGTGGGGTTTAACCAGGGTGCTTCACAAGGGACTTTGGTTTTGTACCTTTGTAAAAACGGGGTCTAATTATTTTTCCAGCAcggaaacaaaaaagaaaacaaaaatcatcaaaacaaaaaatatatttctttttctttctttctttaaattaaaagaaacaaaattaaaaggcaCAGCACtatcacactgaacacattttgtttctcgAAAGCAAGTTTTGTCTTTACAATTTCTAAAACCCTAATTTATACAAAGCGTAATGAACAACCATCAATGTTTAAAGTTCtcgtttcattttcaaaagtcTCTTTTCTTGGAAACCTGCTCACGTGTTCACGTTCACCAGCGGCTGTGCGCTCAGGAACCTGGAGGACTGAAATGGTTACCAAGCCGGCACTTCCTCTTCCTAGACCTTTCTCTGGATGTCACTTCCTTGAAATGGTATTGAAGTGAACCCTCAAGAGTTCACCGTGTCCTTCTGTCATgaataacatgttttgtttttttaaattaaacaaactgtttttcttcatccgtttttttatttattcttccaggaaagtagtgttttgttttaccaaGTAATTGTATGTTCAgtcaaagtttattttatgttgtagtTGTAAGAAAAATCCTCCTTTCTTCTTAAAAAGTTTGAAGTGTAAGAAAGCCCTGAACGGGCTGACCGTCTGAATCCAGTGTCATGTGACTTAGCGTTATGCTCCCCTGAAGGCTTCAGTTGACagaataatttttttcttccgttttttgtttttttgtccagaTCACGTTGAAACAGAACGTTCCTTTGAGAAACCTAGAAACTGGGTTAAGGCTTCCTTCAGTCCCGGAtgaaaatattgctttaatattgCCACAAAATCCACTGTCACAACACTTCTCAAGTGTGTttctacatatttaaaaacgattcattattgttattattatttctcagttCAGTTGATTTCCGGGTGAAATGTCATTCACAACCCGCCCATTGAATCGCAAGCAAAAAGTGTCGTCATTGTCTTTTCCTATGCGAGCAACACGAAACCTGTTGCCACTTGTGCTCTTAGTCCGAGCTGGAAACGAGTGCGTCCCCTCTGCTCGAGGTCAGCTCTGAAGCGGCTGTTTTCTTCTGGTGCGTGCCGTTCTCACTGCAAACAcgcgcacagagacacacacacacacatacacacattcgCACACAATCACACGCATGTTTCACAAGGGCGTGTGACTGGAACGTATTTATAGAAATTGTACACGGTCTCTGTCTCCAGCTGCTCACCACTCTCTCAGCTCTCTGGTGCTGGTTCGGGGCGGTGGGGTGGTGAGGGCGGCGGATGGCTGGGGGGCGGCCGGCTGGgactgttgttgttgctgtggtggctgctgttgctgctgctgctgggggacCCCTTGTGCTGGGGGGGCCCCCACAGAATCCTGGTGTCCCAGTGGCTGGCGTGGGGGGTAGGAGCCCTCAACGATGTGCATCTGGTTGAAGTAGGCCTGCAGCTGGGACTGCTTCTGGAGGTAGAGCCGCTTCTGGTGCAGCCTGATGgggtcgagagagagagatgcataaGACCTCAGTAGACAACATACTCCCATTGGTGCTTGTGGACACTCTTCATCTCAGAATCTACACCTTCACACTCTTCCAAGATCATCTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11107 True 2339 lncRNA 0.43 2 53101901 53104836

Neighbor

gene id symbol gene type direction distance location
AMCG00004539 NA coding downstream 93277 53006399 ~ 53008624 (-)
AMCG00004540 NA coding downstream 102089 52997112 ~ 52999812 (-)
AMCG00004532 NA coding downstream 134192 52964213 ~ 52967709 (-)
AMCG00004534 NA coding downstream 170220 52927361 ~ 52931681 (-)
AMCG00004528 NA coding downstream 280240 52809595 ~ 52821661 (-)
AMCG00004544 LOC107600790,LOC107577576,LOC107735118 coding upstream 12224 53117060 ~ 53150892 (-)
AMCG00004553 NA coding upstream 47035 53151871 ~ 53162352 (-)
AMCG00004552 alg9,LOC107691744 coding upstream 59837 53164673 ~ 53178444 (-)
AMCG00004550 NA coding upstream 91434 53196270 ~ 53202552 (-)
AMCG00004556 NA coding upstream 180458 53285294 ~ 53290739 (-)
G8833 NA non-coding downstream 547528 52553919 ~ 52554373 (-)
G8829 NA non-coding downstream 732438 52369239 ~ 52369463 (-)
G8795 NA non-coding downstream 898221 52203194 ~ 52203680 (-)
G8776 NA non-coding downstream 933360 52168340 ~ 52168541 (-)
G8769 NA non-coding downstream 938819 52116880 ~ 52163082 (-)
G9002 NA non-coding upstream 42929 53147765 ~ 53147974 (-)
G9048 NA non-coding upstream 176215 53281051 ~ 53284971 (-)
G9074 NA non-coding upstream 388659 53493495 ~ 53493710 (-)
G9141 NA non-coding upstream 557548 53662384 ~ 53663246 (-)
G9145 NA non-coding upstream 589368 53694204 ~ 53695507 (-)
G8937 NA other downstream 150514 52946812 ~ 52951387 (-)
AMCG00004533 NA other downstream 190149 52898759 ~ 52911752 (-)
AMCG00004529 bco2 other downstream 227793 52850483 ~ 52874108 (-)
G8761 NA other downstream 1030315 52068053 ~ 52071586 (-)
G8760 NA other downstream 1036019 52065526 ~ 52065882 (-)
AMCG00004551 NA other upstream 74186 53179022 ~ 53189393 (-)
AMCG00004567 NA other upstream 581580 53686416 ~ 53863369 (-)
AMCG00004575 NA other upstream 927798 54032634 ~ 54043428 (-)
AMCG00004590 LOC106612637 other upstream 1251624 54356460 ~ 54373627 (-)
AMCG00004598 NA other upstream 1336935 54441771 ~ 54450341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G286883 NA non-coding CI01000072 null 4269022 ~ 4270014 (-)
eurasian perch (Perca fluviatilis) G20803 NA non-coding NC_053113.1 CM020910.1 30996395 ~ 31031162 (-)