G942


Basic Information

Item Value
gene id G942
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 5752077 ~ 5755468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1122
tttgtttgaaatctttgcaaatttattaaaaataaaaaaccaaaaaagcacaagtacataagtattcacaccctttgcCATGaaactcaaaattgagctcaggtgcatcctgttttcactgatcatccttgagatgtactgtgaatactttccggatgcactgtattaatGGACTTTTCCAAAGCAGCTATGAACATTTCAATTCAAGAAACATAAACCAGTAGAAGCAAGTATACAACTTTAGTTTAGAATGAATGTAACCAAGAACACTACAGCTCGCGATGCCATCTAAGGGTACTTTAGTGAATGTGTAAGAGTAGTTGGTGTATGTTCTCTGTGATTAAGCAATTACGTTTTCACACATGGACCGTTGCTGTACTTTTTTGCCCCTCATAACAGACTGTCTTtcaattccattaaaaacattgtatagtCATTGTATATCATTGTATTGTGATGGAACCaatttttgtcttgcttttctttttctttttcaatgtatttctgatgttttatatttgctttCCTATTTGGTTCTGGTtgattctatttattttataaattgcaGATTTCTGTTAAtccctttgtgtgtgtggattatCAAAGTTGAATTTGACATGTAATCAGTGTTTATGTCAGTATCAATCACTTCCATATACAGTAACATTTGTAGTTGGTACCTACCTACAGATACATGGcctccttatttatttttgtttctgcttttttctgCTATTTGCTGTTCTGGCCACCCATTTGCATCAAGCTTCTAGAACAGCCTTTAATAATGTTGATAGCCAGGATGTAAATGGGGGACGCTAATCAGTGCAACACAAAGCTTTGGAaccattttcacaattttattgcaaaatattcccTAAAGTCAATTCCtttctttaatatttgaaatCACATCATGATTtatgaaagaaagagaagatcataatccttttttaaacattgtgtttaagaaacatttcaaaatatatattgaaaagatGATAAGTAGGATAGTACTGGAAGCCTTATATCAAGAGTAATATTATCCAATTTAATGATAAACATGACAAACATTGAACATTGGTAATTGAAAGCAGGATAGGAAATGTAGCAAATGGTTATAATAAGCATGCTGTACACttttaacacaaaattaaaaaataagttgtgcagaaaaaataaagatttatttgatAAAGGAAAACTTATAATTATGAGTTTACAGAGAATATGTTCAACTATACTGTTGCTTCCCtcatattttaacataaatgtATGTGGAAGTACAAATTCTCAGGATACACCAAAATGTTTTGTACCTGCATTATACTACTGTAATTCTGTATTCTCATTATGGACGCTGTAAAAGAAAGTAAGTACCAAGGGTAAGGCATGATTATGGTAATACATGGTTTTCAGATTGATAACTGAAtctattttgtttccttcttaaTAATTTCAGTGCTCTCATACAGATTTACTGTACAGATGATTGATTATACTGTTGatgtacaatattaaattataatctgTCTAGCATGCTAGTGTCTATGCATTAGCATTATATAACATAGAATAACCTTGCCTATTTACACAGTTTGCATGGATTAATTGATCCAGAATAGAATGTAAATCCAATTTCAGACGTAATATTCATATTGATCGAATTAGTTGTACATAGTATATGCAAAACTAATTTGATAATTAGGAATATTATGTATAAAATTAGGAATATTAGGAATATGACTTGTTCCATTTCTGGATTAGTgtatatttctaaaattattcTGCAAGTTCTGAAGCTTCTGTAATTGTACAGTGATAATCACAATTATAGTTATAATAGGAAtggtaacacaattaaatgtgtgaaGTATTTTAGAATTAAACAGGCATTTTTCAATCATAATCCCCTCCGATTCAACCTCCATATGGTTTGTACTCCCAAAGCTTTGAATCAGTtaactgtctttcttttttaagattATTCCAGTTGCTATAGTAACTTCAGTTGAAATTTAGCAcaaacattatcattatcatgatcattattattattattattattattattattattattattagtgataATTTGTGGCCAGGAATTGTTCAGTTTGCTAATGTTCCATTATTATGGTTTACTGCAATAATGACCCACCTGAACAATCACATTCACAACAGTCTTTTCATTTAGATTCTGGGCTTCACATGATTGTCATGTCAGCTGCGTCACTTTCAATCTCCTTGAAACCCTGGTTGTCCCTTCCTTTCATTTCAATTGAAAGGTGTGCATCATCATTGTAACAACAGCTTGCACAGTGTGGAGTGGTCACCTGCTTGGTCTTGCTGAAGTTGAAGAAGTTCACCCTGTACATGCCTTTCTTGGATCGAGAGATGATTGGGAGGAAGGTGTAGCCCCACTGGATCTCCCTTGGGATGAAGGAAGTCCGTACTTGGCAGCTAGAGCTGGTGGATTCATCCGTACTATCCAAGAAGACCACCAGCTCAAAGTCCTGCTTGTGGAGCGTGTCCACAGACATCTCGAAGAAGGGACTGTTCTTGTCAATGATGTGGCACAAAGTCAGAGGACAAATGAAGAATAGATTGTCCTTACTAGTATCTACTATGAAGTCAATGTTTGCTTGCTCCAAGATAATGGTTTGTCCATCAGGTGTTACAGAGGTCCTAATGACCTTGCCATAAAACTGGCTCCCTATGAGAAGAGTCTTCCTCAGGTTGGCCACCCGGAGGAGAAGACATAGCTTGTTTCCCTGATTGGTAATGACTGCAGTCTTACTGAAGGAGACAGTCTTGGCTCTTTTCTTGGGCATGGAGATCTTGGTCACAATGACTCCACACAGAAATGCCTTTAGGAAAGACCCCACTATGGTCTGGGTAGGAAGCAGAGTGACTGCTGTCCAGCAAAGATCTGATGGACATCTGTAAGTATATCCAATATTCATCTGAGTTGCAATAGAGAAGAGGAAAGCTGCGGCGAGTCCATTAATATTGAACACACAAGGGGTGTGATTCGCAGGGGGATTTTGCCATAACAGGTCCCCATTGTTCTTTGCAATGGAGTACCAGAGCAGAGCGAAGATGAACCAACAAGCCAAGAAGGAGCCAGAAAAGATCAAGAGAACGTAGTGCCAACGGATCTCCACAAAGGTGGTCCAAAAGTCCTTTAAGAAGGCCAGGTTTTTGTGGTACCTTATGTTGCCAAACTCTATGTTGCACTGCCCATCTTTGGACACCAGTCTGGTCCTCTTGATCTGACTTTCTTCCAGGTATGCACGTATGTGTTTCTCTAAGTTCTGGATCATCCTCAGGTTGGGTCCTGatctaagaaattaaaaaacagaaatggacaAGATTTGCTGAAATAATAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1122 True 3392 lncRNA 0.34 1 5752077 5755468

Neighbor

gene id symbol gene type direction distance location
AMCG00003489 NA coding downstream 18640 5633462 ~ 5733437 (-)
AMCG00003488 kbtbd11 coding downstream 196335 5553481 ~ 5555742 (-)
AMCG00003486 NA coding downstream 338416 5408798 ~ 5413661 (-)
AMCG00003483 NA coding downstream 378659 5361087 ~ 5373418 (-)
AMCG00003482 NA coding downstream 394027 5357586 ~ 5358050 (-)
AMCG00003490 NA coding upstream 91430 5846898 ~ 5851181 (-)
AMCG00003491 NA coding upstream 159179 5914647 ~ 5969984 (-)
AMCG00003492 dlgap2 coding upstream 219477 5974945 ~ 5977627 (-)
AMCG00003493 LOC103359253 coding upstream 232616 5988084 ~ 5997463 (-)
AMCG00003494 NA coding upstream 387604 6143072 ~ 6144359 (-)
G862 NA non-coding downstream 410090 5340461 ~ 5341987 (-)
G845 NA non-coding downstream 417319 5330726 ~ 5334758 (-)
G844 NA non-coding downstream 422303 5329572 ~ 5329774 (-)
G811 NA non-coding downstream 611832 5132700 ~ 5140245 (-)
G804 NA non-coding downstream 620376 5131467 ~ 5131701 (-)
G946 NA non-coding upstream 32600 5788068 ~ 5788321 (-)
G961 NA non-coding upstream 73979 5829447 ~ 5829749 (-)
G982 NA non-coding upstream 199636 5955104 ~ 5955319 (-)
G993 NA non-coding upstream 231097 5986565 ~ 5986975 (-)
G998 NA non-coding upstream 531860 6287328 ~ 6287540 (-)
AMCG00003484 NA other downstream 395609 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 943088 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 1856553 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 2213110 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 2321805 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 3253649 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 4097731 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 4119202 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 4869878 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 5195616 10951084 ~ 10956353 (-)

Expression


Co-expression Network