Gene
RNA
| Item | Value |
|---|---|
| gene id | G9161 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 53864951 ~ 53865675 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0043606 | formamide metabolic process | biological_process |
| GO:0019556 | histidine catabolic process to glutamate and formamide | biological_process |
| GO:0009074 | aromatic amino acid family catabolic process | biological_process |
| GO:0043648 | dicarboxylic acid metabolic process | biological_process |
| GO:0052803 | imidazole-containing compound metabolic process | biological_process |
| GO:0052805 | imidazole-containing compound catabolic process | biological_process |
| GO:0006536 | glutamate metabolic process | biological_process |
| GO:0006547 | histidine metabolic process | biological_process |
| GO:0006548 | histidine catabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU11347 | True | 725 | lncRNA | 0.51 | 1 | 53864951 | 53865675 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004560 | NA | coding | downstream | 237069 | 53618422 ~ 53627882 (-) |
| AMCG00004562 | usf1,LOC107657261,LOC107601709 | coding | downstream | 253682 | 53607807 ~ 53611269 (-) |
| AMCG00004561 | NA | coding | downstream | 259535 | 53587275 ~ 53605416 (-) |
| AMCG00004558 | LOC102781260 | coding | downstream | 278739 | 53573530 ~ 53586212 (-) |
| AMCG00004559 | NA | coding | downstream | 331114 | 53526868 ~ 53533837 (-) |
| AMCG00004569 | tecta | coding | upstream | 12600 | 53878275 ~ 53905023 (-) |
| AMCG00004572 | NA | coding | upstream | 44702 | 53910377 ~ 53928613 (-) |
| AMCG00004571 | LOC105907815,LOC100708948,LOC105920897,LOC103369551,LOC102197023 | coding | upstream | 70069 | 53935744 ~ 53949364 (-) |
| AMCG00004573 | NA | coding | upstream | 98310 | 53963985 ~ 53965707 (-) |
| AMCG00004570 | NA | coding | upstream | 114070 | 53979745 ~ 53988395 (-) |
| G9153 | NA | non-coding | downstream | 35171 | 53794078 ~ 53829780 (-) |
| G9149 | NA | non-coding | downstream | 142829 | 53721242 ~ 53722122 (-) |
| G9146 | NA | non-coding | downstream | 164366 | 53697376 ~ 53700585 (-) |
| G9145 | NA | non-coding | downstream | 169444 | 53694204 ~ 53695507 (-) |
| G9141 | NA | non-coding | downstream | 201705 | 53662384 ~ 53663246 (-) |
| G9217 | NA | non-coding | upstream | 220900 | 54086575 ~ 54087038 (-) |
| G9261 | NA | non-coding | upstream | 339878 | 54205553 ~ 54206013 (-) |
| G9273 | NA | non-coding | upstream | 392888 | 54258563 ~ 54273287 (-) |
| G9427 | NA | non-coding | upstream | 783376 | 54649051 ~ 54676988 (-) |
| G9431 | NA | non-coding | upstream | 811989 | 54677664 ~ 54677917 (-) |
| AMCG00004567 | NA | other | downstream | 1582 | 53686416 ~ 53863369 (-) |
| AMCG00004551 | NA | other | downstream | 675558 | 53179022 ~ 53189393 (-) |
| G8937 | NA | other | downstream | 913564 | 52946812 ~ 52951387 (-) |
| AMCG00004533 | NA | other | downstream | 953199 | 52898759 ~ 52911752 (-) |
| AMCG00004529 | bco2 | other | downstream | 990843 | 52850483 ~ 52874108 (-) |
| AMCG00004575 | NA | other | upstream | 166959 | 54032634 ~ 54043428 (-) |
| AMCG00004590 | LOC106612637 | other | upstream | 490785 | 54356460 ~ 54373627 (-) |
| AMCG00004598 | NA | other | upstream | 576096 | 54441771 ~ 54450341 (-) |
| G9414 | NA | other | upstream | 710965 | 54576640 ~ 54620055 (-) |
| AMCG00004618 | dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 | other | upstream | 1049909 | 54915584 ~ 54919938 (-) |
