G9533


Basic Information

Item Value
gene id G9533
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55114342 ~ 55116494 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11821
TACAATTATGAGCAGTACCCttgaaattcatgtttttttaaatggcccAGTGGGGATCAACCAGTTCCAGATCTGTTTGTGATGACTTTGTAAGAAAGTTAGGTTCAAACAGAAAGAATCCATGGTGCCTTATGAAAAAATCAATTGCAAACACAAGCAATCAGCTGGTTTCCCTCAGCTTGACCCGAGACTGACGGCTACTCCCCAGAGCTTTCTCTGCCTCAGTGAGGGACACATCCCAATAGGCCACTGATTGCCCCTCTCAATGTAAGTGGTCAGCATTTTTAAACCCTGCCCCTCACAAACATGGCCGCCACAGGAccttacatataaaaatatcaaatacagCAGTATAACAAAGGAGGTGCCAGGCTGTAGTATGCTAAATCTCCTGTTTCCTCAGCATTTCACATCCATCTGAAAAACAGGACAGTCTTCCGgattctctgtctgtgtctagTGTTCATACATCACGGCCatttgaaaatcacaaacacGTCTGGTTCGTGTTGATCCctaatacataaatgtacacACTACGTTACCAAAATTACTGGGATACCAGAGCTCTGTGAAAGCACCACCCTTGTGACGAATGCCCTTAAGCCAGGGCAGCACAACTGTGCCATTCCTCCATTTTCTAGTATGGCGATTAAACCTTGGTTACTATGGTCTTATCCTAATTTGCTGTTCCGGTTTATTGGTGTTGTGAAATGTTAACAGCACTGTACTTTTCTCCCTGAACCCGCTGTGCTCCACTACCAGCTCTGGGACAGGTGGGTAGATGTGGGTAGATGTACAGGGGCCCCTCACTGTAAATCCCCCTCAGTGCTGGCAGGGCCCTGTGGTCCCCAATatcacaacactgcactggCTGGGCATGGGGTCCTTCACAACACCCCCCCTCTGGTAGAGTTCAATAGCAGGGACAGGAGACTTAACTTCCTTTACTTTTGGTAATATAATGTACTTTGGTGGTCATTTTTATGATGGAATCATGTTGACTATATTTAAACCACTGCCTTATGCAGAAGtagaataataattttaaaactagGGATGTGTTTTACTGgcattttactattttatttctaCGAAACATCTTTTAATGGAGAACGCATTTCCCCCACTGTCAGAAAGATGTGAAAAAGGTGAAAATGGTCACAAGAATAGAGAAAAGAGATATAGATGCAACTGCTTGAAATGTACAACCCTAGACTTTATACAAAACCTTTTCAAATCCCGAAAGGTCTTGACAAACCCAGAGCTCTGCTTCTGGATCACCAGTGAAACCAGGACCTAGGGACTCAAGAGGAGGTTGATGTGCTCTTTACACAAAGGGTTGTGGGAATCTGGAACTCTTACCTGACTTGTAAAGGATGAAAGAAACCCAGCATGGCAGGTTTTGAGATTGATGCTCTGAAGCTGTTGGAATGTTATAGGAGGACTGCAGGGTTTCCCGCAGAAATGTGCACAGGCAAGGCAGTCTGATACTGATTTGTtgagcggggtggggggggtgatcGAGTATTGTCgagtgggggggttggggaacATGTATCGTCCAGTGGGGTGTGCCTGAGGATGGGGTTTAGCTGTGGAGAATGAGAACAGGGAGCTGAGCATGTGTGCTTGTGCTTTAAAGctttttggttgtattttttttttcgttaCCGATCGGTACCGATTTCTCAATAGCGCTACAGGAAACCCTGGGAGGAGCTCAACAAAGGAGTGGGCACAAGAAACAGCCCGACTACAAGCCTGGATCAATGTAACAGGATGATAAAATGCATTGGTAGCATTAGGGATGTGATTGCATGCACAGCTGTGATTTTTGGTCGTAATTTAGGGTAAAAAACGTTTGTTGTAAAATGCCAGTAGAACTCATCCTCAGTTGAATTACGagtttaaattgtttataaatgttCACACAATCATGGGATTCATCGTTCCAGAGCTCTGTTTCAGGACAGACTCCCCATTATTGTGTCTGCTAGTGTATGGCATCGTCAAGCTCATTATGCAGTCGTCTGATGTCCTAACGGTACAGAATGTTGTGTTGATTGCAAAGTCCTGTTTGggaatttcacatttatatatcgtataatttatacattcaataaaataattttaagaaaTTGATCAGTACA
>TU11822
GATGGGGTTTAGCTGTGGAGAATGAGAACAGGGAGCTGAGCATGTGTGCTTGTGCTTTAAAGctttttggttgtattttttttttcgttaCCGATCGGTACCGATTTCTCAATAGCGCTACAGGAAACCCTGGGAGGAGCTCAACAAAGGAGTGGGCACAAGAAACAGCCCGACTACAAGCCTGGATCAATGTAACAGGATGATAAAATGCATTGGTAGCATTAGGGATGTGATTGCATGCACAGCTGTGATTTTTGGTCGTAATTTAGGGTAAAAAACGTTTGTTGTAAAATGCCAGTAGAACTCATCCTCAGTTGAATTACGagtttaaattgtttataaatgttCACACAATCATGGGATTCATCGTTCCAGAGCTCTGTTTCAGGACAGACTCCCCATTATTGTGTCTGCTAGTGTATGGCATCGTCAAGCTCATTATGCAGTCGTCTGATGTCCTAACGGTACAGAATGTTGTGTTGATTGCAAAGTCCTGTTTGggaatttcacatttatatatcgtataatttatacattcaataaaataattttaagaaaTTGATCAGTACA

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU11821 True 2153 lncRNA 0.59 1 55114342 55116494
TU11822 False 570 lncRNA 0.54 1 55114342 55114911

Neighbor

gene id symbol gene type direction distance location
AMCG00004620 NA coding downstream 78390 55030260 ~ 55035952 (-)
AMCG00004621 NA coding downstream 96242 55009704 ~ 55018100 (-)
AMCG00004622 NA coding downstream 115914 54977847 ~ 54998428 (-)
AMCG00004607 NA coding downstream 406331 54699816 ~ 54708011 (-)
AMCG00004605 NA coding downstream 507515 54601459 ~ 54606827 (-)
AMCG00004625 ugdh coding upstream 143 55116637 ~ 55136087 (-)
AMCG00004627 NA coding upstream 24411 55140905 ~ 55141489 (-)
AMCG00004628 NA coding upstream 88591 55205085 ~ 55219718 (-)
AMCG00004633 NA coding upstream 108341 55224835 ~ 55270161 (-)
AMCG00004630 NA coding upstream 155849 55272343 ~ 55293024 (-)
G9523 NA non-coding downstream 39967 55074046 ~ 55074375 (-)
G9517 NA non-coding downstream 94246 55019897 ~ 55020096 (-)
G9504 NA non-coding downstream 105544 55007762 ~ 55008798 (-)
G9512 NA non-coding downstream 110539 55001583 ~ 55003803 (-)
G9502 NA non-coding downstream 139345 54923529 ~ 54974997 (-)
G9570 NA non-coding upstream 146431 55262925 ~ 55263287 (-)
G9593 NA non-coding upstream 230289 55346783 ~ 55357633 (-)
G9643 NA non-coding upstream 437330 55553824 ~ 55559308 (-)
G9656 NA non-coding upstream 461782 55578276 ~ 55584995 (-)
G9650 NA non-coding upstream 468554 55585048 ~ 55605575 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 194404 54915584 ~ 54919938 (-)
G9414 NA other downstream 494287 54576640 ~ 54620055 (-)
AMCG00004598 NA other downstream 664001 54441771 ~ 54450341 (-)
AMCG00004590 LOC106612637 other downstream 740715 54356460 ~ 54373627 (-)
AMCG00004575 NA other downstream 1070914 54032634 ~ 54043428 (-)
G9604 NA other upstream 251091 55367585 ~ 55420058 (-)
G9608 NA other upstream 265722 55382216 ~ 55388939 (-)
AMCG00004640 NA other upstream 413156 55529650 ~ 55551225 (-)
AMCG00004649 NA other upstream 621071 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 697908 55814402 ~ 55846171 (-)

Expression


Co-expression Network