G9643


Basic Information

Item Value
gene id G9643
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 55553824 ~ 55559308 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU11952
NNNgtagtccaggcgggagaggaccagggactggacgagcagctgggtcgagtagtcgCCCTTCatgcatcccagaatgctttgagGAGGGAACGGTGACGTCACCCCTGCTGCTAAGTAACCCTGACACTTCAAAGTAGAGACGCTAGGGCTcagccaatccacatgcacatccgggacactgccctctgctgactggacattattcaccttttgtttagaactgtataaaatgcaATTCCTGGAAGAGATCTGTAAAAAAGCTGTTTGAGCATGAGACTGCCTCATGTTCGCACTGTTATTCTTCTGGGCCGGCCTGCAATAAagacttcttttccatttgcaacacaactgcAGTTTTTATCCTTTAAAGGGGTTTCTTCAACGGTGTTCAcatttgttgcatttattttaaagtgtttgcaGTGATCATCACCATTAgtcaacatttcattttagtcACAAAAcaccaatacaaaaatatttgtatttttaattcacacaaatgtggtatttgaaatacatatacaaagaATAGGAAAATCAAATAGAttatataaatagtatttttccccccaaagtAATTtcagacatacatacacattgttCACAATCAAATGATATACAGCCAAATatggataaataaaaaataaatgaacaaaattgACATCCTGAATGCAAGAAGAATCAACTTACACAAACCTATAATTAAAAATTGTTACTAAAACTTAATTACTGATGTACTTGAActattctatttatttacttttaaagtaCCTCTCTCTGGGataggtttatttaaataagacctgtccaaaacacaaagcacataaGATATTGTAATGATTTAGAGATAGGACTCTTTCGGGGGTGGTAATATTACTGTTTtacgtttattttaaatttactttaacatttacttttgtattcaATTGACAAAATTTCAACATGCATAAATTTGAATTTTGTGGGGTCTCCTGTGTGACAAGCAGTGCTATGCATAATTTCCTGTAAGTGCAAAAAAAGtatggctgtatttgaaactgcATACTATCCTATTACATACTGCATGCCACATACTGATTTTCTGACTAGTAAGTAGTACAGTATGCAGTATGAAGATTAATGATTCAGTGtactatataaaaacaaacaaaaaaaatgtttcgtAAAGTTAAACTATGTTGTTGAAAACTACTTTTTATATGaggaaacataaatacaatgaacaAATTATCAATAAAATTAACCATGTAGTTACATTTGAATTGCAGAGAGCTTCCTCATTTGTAGACTAGTCATCCATTTTTGTAATTGAATGGAACGTCAGCCAACTGTGAAACATGATGGGAAGCAATATTGTAGTTGTATACTACATATATGGCTAATGTAGCCAGTGTTGTCAATTTAGCGCCTAGCAACAAATCTAGTGACTTTTTGGACAAACCTTAGCTACCTTCCGTAGAAGAAAGTCGCCAGTACTGCCCTGCGATGGCGTGGTCTTGCTGTCCTGCCCGGACTCGGAGGCTCACCTCTCTGCATCTACTCTGTTCAGTgagactgacagagacagaggggagcAGGCGAGAAGGCGGAGCAGCACAATCAGTTGACCGCACGGCAGTTGACATAGACTTGAATGAGCTGCACATGTGCAAACAGCGTTGTCAAGGACCAATCACGAATCTGTATTGTTTGCAAATGAGACGCGATGATGTCACGACTAAGCTAATCAGCATATGACATCATCTAGCGACACTTGACGACTTTTCTAGCAGACTTTAGCTACTTTCCATTGAAACTAGTTGGCAACACTGAATGTATCAAGCCATCTGGGTACTTTTACCATACTAAGTAGTATACTATGTCCAATATGCatactactgaaatgttggtatgtagtacatGTAGTATGGTAGATGAGGATTTGAATACAGCCTATgtgaatttaactttttttaaataatttactacATAAACAGTATACTAGGACGATTAGTATACTATCCACAGTTAAGTGCATAGTCCGTAGTATGCAATTTGAGACACGGCTATACAGTAGCCTATATTTCATAGCAGCTAAGGCCAACAACGTTATGACCTCTTTTCAAGCATCCAACAGTCCTACTCATCTTTGCAACAGATGCCCTGGCTGCAGGCTTCACACAGCGAGCTCTCGTGTGGTTTGGTCCTAACTGTTTCAGAGCAGACAGGATTGTATTCCCCGTCATCTGCACAGCCGTAGCAGTTCTTCTTAATTTTGCCCATCAGTCTAAGGAGAAGCTCCTCCACCGCCTGCTTGGTAAACCCCGGCTTTTCGTACTTGCCGCTGCAATGTCGACACGCCTGCCTGAACGCCCTCATCAGGACGGTGCCCCGGTCGCTGCGCAGCCGGTAGTGAAAGACAACCATGATCTGGGCGGAAGGCCACGTTTTGGAGCAGTTGCTGCACTTAAACCTGCGGAGAGAAAAAGGGGATGATTAGACTAGTTAGATAGTAACCTTTTACAAAATGGTAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU11952 True 2521 lncRNA 0.53 3 55553824 55559308

Neighbor

gene id symbol gene type direction distance location
AMCG00004637 NA coding downstream 91098 55460253 ~ 55462726 (-)
AMCG00004629 NA coding downstream 217591 55314396 ~ 55336233 (-)
AMCG00004631 NA coding downstream 240053 55311400 ~ 55313771 (-)
AMCG00004630 NA coding downstream 260800 55272343 ~ 55293024 (-)
AMCG00004633 NA coding downstream 283663 55224835 ~ 55270161 (-)
AMCG00004641 NA coding upstream 55304 55614612 ~ 55628983 (-)
AMCG00004648 NA coding upstream 123144 55682452 ~ 55684986 (-)
AMCG00004654 NA coding upstream 309339 55868647 ~ 55870960 (-)
AMCG00004663 NA coding upstream 533801 56093109 ~ 56096391 (-)
AMCG00004664 NA coding upstream 554097 56113405 ~ 56115924 (-)
G9593 NA non-coding downstream 196191 55346783 ~ 55357633 (-)
G9570 NA non-coding downstream 290537 55262925 ~ 55263287 (-)
G9533 NA non-coding downstream 437330 55114342 ~ 55116494 (-)
G9523 NA non-coding downstream 479449 55074046 ~ 55074375 (-)
G9517 NA non-coding downstream 533728 55019897 ~ 55020096 (-)
G9656 NA non-coding upstream 18968 55578276 ~ 55584995 (-)
G9650 NA non-coding upstream 25740 55585048 ~ 55605575 (-)
G9661 NA non-coding upstream 47619 55606927 ~ 55607416 (-)
G9698 NA non-coding upstream 158829 55718137 ~ 55718729 (-)
G9700 NA non-coding upstream 160656 55719964 ~ 55720217 (-)
AMCG00004640 NA other downstream 2599 55529650 ~ 55551225 (-)
G9604 NA other downstream 133766 55367585 ~ 55420058 (-)
G9608 NA other downstream 164885 55382216 ~ 55388939 (-)
AMCG00004618 dscaml1,LOC107592669,LOC107699174,LOC107728164,LOC107699210,LOC107566081 other downstream 633886 54915584 ~ 54919938 (-)
G9414 NA other downstream 933769 54576640 ~ 54620055 (-)
AMCG00004649 NA other upstream 178257 55737565 ~ 55743297 (-)
AMCG00004653 znf384l,LOC108433737,LOC107665159,LOC106605395 other upstream 255094 55814402 ~ 55846171 (-)
AMCG00004652 NA other upstream 330674 55889982 ~ 55894086 (-)
AMCG00004660 LOC106605085 other upstream 446743 56006051 ~ 56008866 (-)
AMCG00004665 p3h3,LOC106605089,LOC106583419 other upstream 547405 56106713 ~ 56109085 (-)

Expression


Co-expression Network