G1281 (LOC107655310,LOC107707684,LOC107553276)


Basic Information

Item Value
gene id G1281
gene name LOC107655310,LOC107707684,LOC107553276
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8288835 ~ 8289762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1509
TACCTTCCAGCGCACTGGACTGAGCTCTCTGATGCGGTCCCCCATATCCTCGTCCACGTTGAAAGTATTGATGACCGAATTGATTTTGAAAGCCACTTTGTACTCTCTGCACCAGTTCTGTACTTTGTATAGGTTTTCCAAGTGGCTTTTCTTCCCCTGTCGTCGGCCTATCATGCTGTTGGTCTCCTCATTGAAACTATCACAGGAAACCGCTAAAATGTCTAGATAATCACCTGCAGGAGACAGGAAATGGTTTGGGTTGCAAGACAGCGATATTGCAAGACACAGACTGAGCAATCAATTCAATTTTTGTCACTTATGTTGTTCAGGCACATCATATGATGCCCATGTGTATCCCTCTCCCTGTGTACACTTATACATGTTAGTTTACAGAATGTTTTCAGCCTATAGGCCTATGCATTTACTTATCAAGATTAAGATGAAAGTGAGAACATCCCGAGTCAATCCACTTATCGAAATACATCactgatttctttattaaaaagttaATGTCACTGAAAATACgaattattgtaatttgtattcttCCCTTACCAaatgaacattttcagaaaagtaATCCAATTGTATCTGTGAAATCAGTGCAATGTGGTTTAACACCACTTCGTTGTGTGAGAACACTAAACCCTACCCTTCAGTTGAGGCCTTTACACTACTATTTGAACTACTACTGCACTCATAGTATTCAAATGATGTTGCAGGCTTTACATCTGCATTCATAGgattgaaattattttgaaaatattagtTCCAAAAGGTCTATCAGTAATATAACGTCCACTTGAATCTGTAACAACTTTACGCTGTGCAATAAACTCTTCTGCCATCTGCAGTTATGAACCGATACTGCAACCAACCGATCTGCGAGCTTGTGTATATaggccagtggttcccaaaccagtCCCGG

Function

NR:

description
PREDICTED: radical S-adenosyl methionine domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1509 True 928 lncRNA 0.36 1 8288835 8289762

Neighbor

gene id symbol gene type direction distance location
AMCG00003531 NA coding downstream 5091 8278896 ~ 8283744 (-)
AMCG00003528 NA coding downstream 790743 7489697 ~ 7498092 (-)
AMCG00003519 adi1,LOC102789913 coding downstream 841962 7421056 ~ 7446873 (-)
AMCG00003520 tssc1 coding downstream 881221 7381098 ~ 7407614 (-)
AMCG00003518 NA coding downstream 1061317 7221488 ~ 7227518 (-)
AMCG00003536 NA coding upstream 363996 8653758 ~ 8672876 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding upstream 396284 8686046 ~ 8706309 (-)
AMCG00003537 NA coding upstream 431482 8721244 ~ 8751203 (-)
AMCG00003549 NA coding upstream 697343 8987105 ~ 9005791 (-)
AMCG00003548 NA coding upstream 862122 9151884 ~ 9155291 (-)
G1268 sox11,LOC106958914,LOC103147284 non-coding downstream 234498 7976780 ~ 8054337 (-)
G1254 NA non-coding downstream 491977 7796450 ~ 7796858 (-)
G1252 NA non-coding downstream 499921 7788673 ~ 7788914 (-)
G1228 NA non-coding downstream 784647 7499433 ~ 7504188 (-)
G1238 NA non-coding downstream 797355 7491281 ~ 7491480 (-)
G1283 NA non-coding upstream 1956 8291718 ~ 8292212 (-)
G1363 NA non-coding upstream 360261 8650023 ~ 8669831 (-)
G1374 NA non-coding upstream 551716 8841478 ~ 8841755 (-)
G1381 NA non-coding upstream 562435 8852197 ~ 8852441 (-)
G1405 NA non-coding upstream 667765 8957527 ~ 8964495 (-)
AMCG00003484 NA other downstream 2932367 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 3479846 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 4393311 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 4749868 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 4858563 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 719355 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 1563437 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 1584908 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 2335584 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 2661322 10951084 ~ 10956353 (-)

Expression


Co-expression Network