G1415 (cpsf3)


Basic Information

Item Value
gene id G1415
gene name cpsf3
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 8974810 ~ 8977849 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1656
ATATACTAAACACAAAATTCTTTATTTGTATCAAAATATACAGATTGCATacctgcattttcttgttaAAGGTTCAATTTAATCAGGGAgtctgtgtgagtttgtgtgtgaataGCTCAACAATGTGAACAGGTGCCCAGCTTGGTTCCAGTTTGCACTATAGTAACAAAAACATCAATTGTCTGGTCCTCCTGCTTTTGAATCCCTATCAGTTTTCattgtaacaacaaaaatacattcctgGATCTCAGTTTATTCCAGTGTGCGCGGCACAGACACACGACATTTCATATGAAGACAGCAGAATATTTCTCAAACTTTCACTCTCAAAGCATTGTTCATTTTCTTCCAAACCCACTTGATCTTAAatccaaatgaaaacatttttcaaagtggAGACACCATCAgactattattgtttttatctggGCATTccatagaaaagaaaacaggaattaaaaaaataccaaaaaaaggCCAGTTATTGGAAGTATTGTACAGCAAAGATGTTAACTGGTGTGAACAAGTCTTGTACTGTGACCTCCTCCTCGATTAAAGGGATCTAGTGTTCGTAATGTGATTGGTGGGGGGTGGAGGTCAGTCAGAGCTCCCCCAGCGAAGTccagtccccccacccccccgggcCCGGATCAGGCCAGTCTCGTCAGAGCGCCGGGTTCAGGGCGTCATACAGCCGCTGCACTGCCAGCTCCACCATCTCCTTCAGCGACTCGTCGTCAGCGCTGCCCTCCTCGTAGTCCACCGTTCGGGTCTCCAGGCAGATGTAGGCCGTTTTCCCATCCACCGTCACGGAGATGTTCTTGCCATCCTTGAAATCCACACAGTCCTCTCCGAACATGTCCTGTAGCATGACTTCTAGTCTCTTCTGGTAAATGTCCATATCTACCTTCCCCCTTACAGAGGTCTCCATGACTTTCTGAGCCTTGGGGTTAGACTGCACTTCCAGGACCACTGTGGTGACGGCATCGGCATACATGTCATTGAGGGGGTTGGCAATCCACTgaaacagaacacacacaatAGTTTGAAAACGTTGATTCCCGGGGCCAGCTCCCAGGGGGGCTTTACTGCAACACTATTGCATTCTGGGTTATTCAGGATGCCTACTGAGGCCTGTGGGATCAATGTAAGAAAGCAGACGAGACCGAACAGAAAGGCCACACCCGATCACCTTCTATCAGAAACCTCACCAACGTACAGCATGTGGATTAGTGACAGCAAAGCCATGACACACATGCTGGGACGTTCTCCAGCTTCATGGCTGATGAAGATGTCAGACTATCTCTTTCCCCAAACCCATTTTAAAGACCATCAATCTGTGGCAAGTATCATCACAACAGAAATAAGATATAGCTGTGCTCCACACTAAAACATCtagaatgtgtaaatgtatgagATCAGTTGCatgttctttgctttattctactCTTAGCCATTTTGTATTATCTCATTATCATACTGACTGCACgctatatacagacgggtgacaaatttaaggaaatacctgaataaatgagtggaggaacataatgaatgctgGTAACCCtgaacaggtgtactgcatgatacaattaagcaattaacatcctgtcatgctctgtggcatgtatacaaatgctgagcatgcccagctgacctcgattttggatcaagatagcaagaggaaaggatcgaAG

Function

symbol description
cpsf3 Predicted to enable 5'-3' exonuclease activity; RNA binding activity; and endoribonuclease activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage and mRNA polyadenylation. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF3 (cleavage and polyadenylation specific factor 3).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1656 True 1697 lncRNA 0.47 4 8974810 8977849

Neighbor

gene id symbol gene type direction distance location
AMCG00003537 NA coding downstream 223607 8721244 ~ 8751203 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding downstream 268501 8686046 ~ 8706309 (-)
AMCG00003536 NA coding downstream 301934 8653758 ~ 8672876 (-)
AMCG00003531 NA coding downstream 691066 8278896 ~ 8283744 (-)
AMCG00003528 NA coding downstream 1476718 7489697 ~ 7498092 (-)
AMCG00003549 NA coding upstream 9256 8987105 ~ 9005791 (-)
AMCG00003548 NA coding upstream 174035 9151884 ~ 9155291 (-)
AMCG00003553 zdhhc14,LOC106574720 coding upstream 204252 9182101 ~ 9207165 (-)
AMCG00003552 zdhhc14,LOC106610784 coding upstream 276005 9253854 ~ 9254096 (-)
AMCG00003554 NA coding upstream 290654 9268503 ~ 9312491 (-)
G1405 NA non-coding downstream 10315 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 122369 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 133055 8841478 ~ 8841755 (-)
G1363 NA non-coding downstream 304979 8650023 ~ 8669831 (-)
G1283 NA non-coding downstream 682598 8291718 ~ 8292212 (-)
G1492 NA non-coding upstream 197006 9174855 ~ 9179981 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 872842 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 874220 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 1437089 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 2072302 11050151 ~ 11051078 (-)
AMCG00003484 NA other downstream 3618342 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4165821 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5079286 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 5435843 3536172 ~ 3538967 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other downstream 5544538 3394657 ~ 3430272 (-)
AMCG00003550 NA other upstream 31268 9009117 ~ 9082850 (-)
AMCG00003572 NA other upstream 875350 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 896821 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 1647497 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1973235 10951084 ~ 10956353 (-)

Expression


Co-expression Network