G1492


Basic Information

Item Value
gene id G1492
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 9174855 ~ 9179981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU1750
ATGTCATAATGTCAAAGGATAGGTGTTAATAAACCTTGTTGGTTGCACTAGGTCATAAGTCTGTGGATGCCGTGTTCTGCATAACTGGGGAAATGGatgaaaaacacagctgtatcaATTGAAGATAAAAAAGGCACTGTATGGTCTTTTGGTTAGGTAAGAATGTTAACCCAATACAATCTTCTGTGGTAGAGTCTTTTCTACATGAAACGGTTTTGTTCACATCTtgtcatacatatatatgactGGATTCTAACCCAAGCAAATCAAGACTACAGGTGCCAGAGCagatgacaaaaataaatccataaaaataaaggggtgggggagaaaaaacagcaagatctgagattgatgtatttattgttttgaatcTGATGAGTAATGATGAGAGGTCAGGAGTTAATCATGTATGTTACAGAGTacaggaggaaaagaaaagtctTAATGCTTCAGTTACACTTTATGGAAGTCATACAGGCtaaagaatacaaaatcagaaagcagattaaaaaaaataaaagcttcagATTCAACCATTTTTCCATAACTTCGCAATATGCCAGGCTTTCCGAGGAACACACATTGCAAAGAAATGCACAATATTTCCTGTTTGGAGCATCTGCTCTAGTGCTTTAACCTGTATTTCGAATGGCCCGATCAtttctctcctcttttctgTGGACATGCATCTTATTTAAAAGCTCTGATCTTCAAGTCCAGACCTAAAGCACGAGCAAGACTGAAGACAATATGGGCAGAAGCGCATTACAAAAATGgcagtagttatttttcttcatcctTCCTGACTAATGTCCAGTGACTCTTTCCCTTCTAAGATTTGAAGCTGGAATTTGCCAGAGCTGTTCTCTGCAGTGTCTTATGGTAGATGTGTTCAGAAggagctgtgtttgtttgttttctggtaGAAAGCACAGTACTGATTTCTAAAACGGTGCCAAGTCCTTTTCTGTGAAGCTAGTGTTTCAGGCTGAGAGGATGTGATATTTAAGACAGAGATAAAATagtttgtgtatataaatatatatacatatacacacaccaaatGGCAAATCGACTGTTGGGAAAACGAGTTCTGACAATTGTTCGTGTCAAAGAAGATCATTGAAGGAGCTGGTCTTGTGTTGTCAGTTTTTGTCTACTTAAAAGTTGTCTTTTCATCCCCAAATTgagaacagatttgtttttgaagcctaactttgagaaatacatttcttcGAGGGCAGCACTtttacattcaaaacatttctcaagtcacttatttaatagaaaaatgttttatagattattaatttttgttttatacagtttaaaaggaaaataattaaaaagatgaCAAATCGAACTATCCATGCAGTGAGTGACAGGAGTGTCTGGGGTGTCATGTGCATGTGGGGGGGCTGCGCTCTGTGCACTCTGGTCACCACACTTTCATGTCCAGCAGCTGCAGGTCGCCCAGGATCTCCACCTGTTGGATGCGGCTCAGATCCTGCACTCTGTGTCTGAAGTCCAGCAGGTGAATCCCGTTCACAGCCACCTTGAACTGATGCGCTTCACACAAGATGATCTCAAAATACTCCCCCGGAGTGAAGGGGAATTTGGGCAAGGTGTTCGAGGGGAATTTGGGCAAGGTGTTCTCCTCGGGGCCCCAGCACTCGTGCAGGAAGGAGTTTCTGATGAACACACCGGCTTTGATGCGGGGATTGAGGTGCAGAGCGATGTCACTCGACGTACTGGAGCCCAGGTTCACGGTGAAGCTGCGGGGCCGCAGACAAAGTTAATCGTTTGCAGAAAAATCGGAGTTTTTTTTCACAGCAACCCACATTATTAGGGTACTTTGCGTGAGGAATGCATTTTATAACGCCGTGCTGTGGTAGTTCACACAGACCCTGCACTACGACGGATGTATGGAAGATGCCGTCATTTAATTCCATTACAAGCCAGACGTTTTTCAAGAGATGCCATCCTACACCTACACAAAACATGTCACAGTGCTTTTGTGCGGCAGAACACATCAGCGGCAGCAGAGCTACAAAGCAGCATACCTCCCTGCAGCAAGACTCGGCTCCTTTGTGAATCAGACTCGAGCAAGGGCGCCGCGCATGCCACAGAGAATCAGCCTCACTTCACAGGTTGACCTTCGAAATCACTTGTTTTGCTCAACATCCAACGAGATTCTGCAGCGGCAGCGGCTTGTGGGTTTGTTCGCATCCGTTGTCTTGTCAATagccaccacccccccccaaaaaaaattatataacaaACACAGATTCCAGATGTGTGCTCTTTGccacagaaaatgaatgcagaGTAAACCCTTCCCTACCTGTGCGGATACGCATTGATCTGTCCTTTAATCATAATGGTTTGTCCCGGCCTCATTCCGTTAAATAGACTTCCTTTGTAAGGAAGGGTCTGCAACAGAAAAAGACAGTGTATATCAATCTGTGTGCACTAGACTGGAATTTATTTGAGTGTTTTTAAGACTACAGGGCTGTGTGATGCCCTAGGATATTATGCCAACTGCCAGTGGGTTGACAAGACTCTATGGCTGTGTGTAAATACATCAGTTACTGTAAGAGGAATCTAACAAGCCAATATCTTCACTGGAGTCATTCAGTTCATTTTTAGAAAGTGAAACGTAATGCCAATTAAGAACGGATGGCATAATTTGATTGCGATGTTCTGGATCCCTTCCCTGTCTGGCGTTTGTTTATATCCGATCATTTGGCCGTGTCACAGCGATGAGTGTGATCTCAGCACACACTACACATTGTTTGCCACAAATATGTTCAATTATCTGTTTAGGCTGTTTTTTGCTGAACAAAATATCGGAAATACTTACAAAGTCGAACGATTCAGAAAACAgttcctgcaaaacaaaaatcaagaagtcttagaaaaatatttttaaataaataagaagtgCCTGAAGCCCCTGAGGATTAATCAAGTGCTGTTTTTGAAGGATCAAGGCATGAAAGAAGCAACAGTCATCTATGCGCTCCGGGTTCCCGCTTTTCCCATTTCAAGTAGTAGTAGAGATCCATTAGAACACAGTTAACAAGTATGTATCAGACACACAGTCACGCAAAGACACCATATGAGGGTCACATTTccttaagaaaaactaaaaatggccGATTACATGCTTGTAAGAAGTCAGGACAGTAGGGCTAGTGTTATGAATGtggatttttgtttaatttgattttaaacctaaaacaaatccatttaaCTCTATATAACCAGACACACCCACCTTAAATATGTCATGAGTGTACTACTATATACACACCCAGCATAACcaaaccttttttccttttgcatttaTGCGTTTTTATATCTTTTGCTCCAGTCTATTCAACTTGACACTTCGatgattaaaacatgtaaagcaaattaatgtttttcaggCACAAAATATGGCTAAGGTGAAATCGAAAGCGGACACACATTGGGCAAGGAAATTTTGTCACAGAAGTTAAATGTCCCTCAATATCGCTCTATACTGCAGTGACCCCAGTCAGATGTATAAATGACAGGTCaccagaaaatgaaaagttgCGATTGCTTTAGGAATAGAAAATCAAAGATCACATCCTTACATTcagatgtgtgtctgtgctcatCGCAATTGATGGTGGTGGAGTCGAggtctgaaaatgtaaaacactgaaCACAATGAACACTGGCACGACACATTTCACACAGGAAATCGTGCACGGgaacacacatgtacacacacacacttatttttgtaaaaatcaGCCGAGctttacattgaaaacaaagacaaacacttATGACAACAACTTAACAGAATCAATTACTttacaaagaaatgtaatactggGATTGCAAAGTTAGAACTTAAAAATGTGATATGATGAAGCACatggaagaagaaagaaaaaaaaatgccattccTCCCACAGAGTGATCTACATGTAGTGAATTACAACTACATCCCAAAGCACGGGTGGTTGTGAAATGTTGGCTGAAAGGGTCATTCTTCGTTGCAAATCGTGCTGGATTGCGACTGTGAAACACTACCCACTCCCAACAGTTCAGCACCCGGCCACATTGCATCTGGAGCTGTTGATTTggttttttggttttatgtaaGCATGGTGTGTACAAAACAGAGCTTTGCTCCTTTGGGGTTAAGCAAAGCCTGatgaaaaatagattttatttccaGCCTTAAGTCACACCTTTAACCATTATTGTTCTGTGAATATTTTAGCACAGAAAAACACTTATTCTTCACAGTGTCATGCTCAAAAGGGTTTGACAGTTATAGTCTGTAATGTGATCATCACTAACCAggcaacaaaatgaaaataaaagattgtTTACCCAGAaactacatttttatattttaattgaaggaTTCCCAACAAATACTGCTCACAAGTAACAGCTACAAACTAgttcatttaaatatagttaTTAGACTATAGATACACTAACactacagtaaaaaaaacaaatacttttaatacagaatagtttttttccccagataAGAAGGGGATACATAATAGTATCCATCTGCTGCGGTTGGGAAGGAAGTAGGATTTGTCTCTATATTAAAATACGATTGTTACTTACAGAGCTTAAAAAGAAAGCGACGACGTCCACTTTTACTTTGCCATACATCCCCAGCGTGTTGACCCTCGCGAGGTCCACTCTGTGTCTGAACTCCACGGTATGCATCCCATTCACCGCCAC
>TU1751
ATGTCATAATGTCAAAGGATAGGTGTTAATAAACCTTGTTGGTTGCACTAGGTCATAAGTCTGTGGATGCCGTGTTCTGCATAACTGGGGAAATGGatgaaaaacacagctgtatcaATTGAAGATAAAAAAGGCACTGTATGGTCTTTTGGTTAGGTAAGAATGTTAACCCAATACAATCTTCTGTGGTAGAGTCTTTTCTACATGAAACGGTTTTGTTCACATCTtgtcatacatatatatgactGGATTCTAACCCAAGCAAATCAAGACTACAGGTGCCAGAGCagatgacaaaaataaatccataaaaataaaggggtgggggagaaaaaacagcaagatctgagattgatgtatttattgttttgaatcTGATGAGTAATGATGAGAGGTCAGGAGTTAATCATGTATGTTACAGAGTacaggaggaaaagaaaagtctTAATGCTTCAGTTACACTTTATGGAAGTCATACAGGCtaaagaatacaaaatcagaaagcagattaaaaaaaataaaagcttcagATTCAACCATTTTTCCATAACTTCGCAATATGCCAGGCTTTCCGAGGAACACACATTGCAAAGAAATGCACAATATTTCCTGTTTGGAGCATCTGCTCTAGTGCTTTAACCTGTATTTCGAATGGCCCGATCAtttctctcctcttttctgTGGACATGCATCTTATTTAAAAGCTCTGATCTTCAAGTCCAGACCTAAAGCACGAGCAAGACTGAAGACAATATGGGCAGAAGCGCATTACAAAAATGgcagtagttatttttcttcatcctTCCTGACTAATGTCCAGTGACTCTTTCCCTTCTAAGATTTGAAGCTGGAATTTGCCAGAGCTGTTCTCTGCAGTGTCTTATGGTAGATGTGTTCAGAAggagctgtgtttgtttgttttctggtaGAAAGCACAGTACTGATTTCTAAAACGGTGCCAAGTCCTTTTCTGTGAAGCTAGTGTTTCAGGCTGAGAGGATGTGATATTTAAGACAGAGATAAAATagtttgtgtatataaatatatatacatatacacacaccaaatGGCAAATCGACTGTTGGGAAAACGAGTTCTGACAATTGTTCGTGTCAAAGAAGATCATTGAAGGAGCTGGTCTTGTGTTGTCAGTTTTTGTCTACTTAAAAGTTGTCTTTTCATCCCCAAATTgagaacagatttgtttttgaagcctaactttgagaaatacatttcttcGAGGGCAGCACTtttacattcaaaacatttctcaagtcacttatttaatagaaaaatgttttatagattattaatttttgttttatacagtttaaaaggaaaataattaaaaagatgaCAAATCGAACTATCCATGCAGTGAGTGACAGGAGTGTCTGGGGTGTCATGTGCATGTGGGGGGGCTGCGCTCTGTGCACTCTGGTCACCACACTTTCATGTCCAGCAGCTGCAGGTCGCCCAGGATCTCCACCTGTTGGATGCGGCTCAGATCCTGCACTCTGTGTCTGAAGTCCAGCAGGTGAATCCCGTTCACAGCCACCTTGAACTGATGCGCTTCACACAAGATGATCTCAAAATACTCCCCCGGAGTGAAGGGGAATTTGGGCAAGGTGTTCTCCTCGGGGCCCCAGCACTCGTGCAGGAAGGAGTTTCTGATGAACACACCGGCTTTGATGCGGGGATTGAGGTGCAGAGCGATGTCACTCGACGTACTGGAGCCCAGGTTCACGGTGAAGCTGCGGGGCCGCAGACAAAGTTAATCGTTTGCAGAAAAATCGGAGTTTTTTTTCACAGCAACCCACATTATTAGGGTACTTTGCGTGAGGAATGCATTTTATAACGCCGTGCTGTGGTAGTTCACACAGACCCTGCACTACGACGGATGTATGGAAGATGCCGTCATTTAATTCCATTACAAGCCAGACGTTTTTCAAGAGATGCCATCCTACACCTACACAAAACATGTCACAGTGCTTTTGTGCGGCAGAACACATCAGCGGCAGCAGAGCTACAAAGCAGCATACCTCCCTGCAGCAAGACTCGGCTCCTTTGTGAATCAGACTCGAGCAAGGGCGCCGCGCATGCCACAGAGAATCAGCCTCACTTCACAGGTTGACCTTCGAAATCACTTGTTTTGCTCAACATCCAACGAGATTCTGCAGCGGCAGCGGCTTGTGGGTTTGTTCGCATCCGTTGTCTTGTCAATagccaccacccccccccaaaaaaaattatataacaaACACAGATTCCAGATGTGTGCTCTTTGccacagaaaatgaatgcagaGTAAACCCTTCCCTACCTGTGCGGATACGCATTGATCTGTCCTTTAATCATAATGGTTTGTCCCGGCCTCATTCCGTTAAATAGACTTCCTTTGTAAGGAAGGGTCTGCAACAGAAAAAGACAGTGTATATCAATCTGTGTGCACTAGACTGGAATTTATTTGAGTGTTTTTAAGACTACAGGGCTGTGTGATGCCCTAGGATATTATGCCAACTGCCAGTGGGTTGACAAGACTCTATGGCTGTGTGTAAATACATCAGTTACTGTAAGAGGAATCTAACAAGCCAATATCTTCACTGGAGTCATTCAGTTCATTTTTAGAAAGTGAAACGTAATGCCAATTAAGAACGGATGGCATAATTTGATTGCGATGTTCTGGATCCCTTCCCTGTCTGGCGTTTGTTTATATCCGATCATTTGGCCGTGTCACAGCGATGAGTGTGATCTCAGCACACACTACACATTGTTTGCCACAAATATGTTCAATTATCTGTTTAGGCTGTTTTTTGCTGAACAAAATATCGGAAATACTTACAAAGTCGAACGATTCAGAAAACAgttcctgcaaaacaaaaatcaagaagtcttagaaaaatatttttaaataaataagaagtgCCTGAAGCCCCTGAGGATTAATCAAGTGCTGTTTTTGAAGGATCAAGGCATGAAAGAAGCAACAGTCATCTATGCGCTCCGGGTTCCCGCTTTTCCCATTTCAAGTAGTAGTAGAGATCCATTAGAACACAGTTAACAAGTATGTATCAGACACACAGTCACGCAAAGACACCATATGAGGGTCACATTTccttaagaaaaactaaaaatggccGATTACATGCTTGTAAGAAGTCAGGACAGTAGGGCTAGTGTTATGAATGtggatttttgtttaatttgattttaaacctaaaacaaatccatttaaCTCTATATAACCAGACACACCCACCTTAAATATGTCATGAGTGTACTACTATATACACACCCAGCATAACcaaaccttttttccttttgcatttaTGCGTTTTTATATCTTTTGCTCCAGTCTATTCAACTTGACACTTCGatgattaaaacatgtaaagcaaattaatgtttttcaggCACAAAATATGGCTAAGGTGAAATCGAAAGCGGACACACATTGGGCAAGGAAATTTTGTCACAGAAGTTAAATGTCCCTCAATATCGCTCTATACTGCAGTGACCCCAGTCAGATGTATAAATGACAGGTCaccagaaaatgaaaagttgCGATTGCTTTAGGAATAGAAAATCAAAGATCACATCCTTACATTcagatgtgtgtctgtgctcatCGCAATTGATGGTGGTGGAGTCGAggtctgaaaatgtaaaacactgaaCACAATGAACACTGGCACGACACATTTCACACAGGAAATCGTGCACGGgaacacacatgtacacacacacacttatttttgtaaaaatcaGCCGAGctttacattgaaaacaaagacaaacacttATGACAACAACTTAACAGAATCAATTACTttacaaagaaatgtaatactggGATTGCAAAGTTAGAACTTAAAAATGTGATATGATGAAGCACatggaagaagaaagaaaaaaaaatgccattccTCCCACAGAGTGATCTACATGTAGTGAATTACAACTACATCCCAAAGCACGGGTGGTTGTGAAATGTTGGCTGAAAGGGTCATTCTTCGTTGCAAATCGTGCTGGATTGCGACTGTGAAACACTACCCACTCCCAACAGTTCAGCACCCGGCCACATTGCATCTGGAGCTGTTGATTTggttttttggttttatgtaaGCATGGTGTGTACAAAACAGAGCTTTGCTCCTTTGGGGTTAAGCAAAGCCTGatgaaaaatagattttatttccaGCCTTAAGTCACACCTTTAACCATTATTGTTCTGTGAATATTTTAGCACAGAAAAACACTTATTCTTCACAGTGTCATGCTCAAAAGGGTTTGACAGTTATAGTCTGTAATGTGATCATCACTAACCAggcaacaaaatgaaaataaaagattgtTTACCCAGAaactacatttttatattttaattgaaggaTTCCCAACAAATACTGCTCACAAGTAACAGCTACAAACTAgttcatttaaatatagttaTTAGACTATAGATACACTAACactacagtaaaaaaaacaaatacttttaatacagaatagtttttttccccagataAGAAGGGGATACATAATAGTATCCATCTGCTGCGGTTGGGAAGGAAGTAGGATTTGTCTCTATATTAAAATACGATTGTTACTTACAGAGCTTAAAAAGAAAGCGACGACGTCCACTTTTACTTTGCCATACATCCCCAGCGTGTTGACCCTCGCGAGGTCCACTCTGTGTCTGAACTCCACGGTATGCATCCCATTCACCGCCAC

Function

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase 1-like protein

GO:

id name namespace
GO:0043412 macromolecule modification biological_process
GO:0006464 cellular protein modification process biological_process
GO:0036211 protein modification process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1750 True 4758 lncRNA 0.33 2 9174855 9179981
TU1751 False 4734 lncRNA 0.41 3 9174855 9179981

Neighbor

gene id symbol gene type direction distance location
AMCG00003548 NA coding downstream 19564 9151884 ~ 9155291 (-)
AMCG00003549 NA coding downstream 169064 8987105 ~ 9005791 (-)
AMCG00003537 NA coding downstream 423652 8721244 ~ 8751203 (-)
AMCG00003538 LOC106571256,LOC107668217,LOC107693235,LOC107549106 coding downstream 468546 8686046 ~ 8706309 (-)
AMCG00003536 NA coding downstream 501979 8653758 ~ 8672876 (-)
AMCG00003553 zdhhc14,LOC106574720 coding upstream 2120 9182101 ~ 9207165 (-)
AMCG00003552 zdhhc14,LOC106610784 coding upstream 73873 9253854 ~ 9254096 (-)
AMCG00003554 NA coding upstream 88522 9268503 ~ 9312491 (-)
AMCG00003555 NA coding upstream 227396 9407377 ~ 9429572 (-)
AMCG00003559 LOC103384102,LOC106610790 coding upstream 352934 9532915 ~ 9533577 (-)
G1415 cpsf3 non-coding downstream 197006 8974810 ~ 8977849 (-)
G1405 NA non-coding downstream 210360 8957527 ~ 8964495 (-)
G1381 NA non-coding downstream 322414 8852197 ~ 8852441 (-)
G1374 NA non-coding downstream 333100 8841478 ~ 8841755 (-)
G1363 NA non-coding downstream 505024 8650023 ~ 8669831 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding upstream 670710 9850691 ~ 9851427 (-)
G1631 NA non-coding upstream 672088 9852069 ~ 9852338 (-)
G1744 NA non-coding upstream 1234957 10414938 ~ 10415887 (-)
G1856 NA non-coding upstream 1870170 11050151 ~ 11051078 (-)
G1935 NA non-coding upstream 2201891 11381872 ~ 11386054 (-)
AMCG00003550 NA other downstream 92005 9009117 ~ 9082850 (-)
AMCG00003484 NA other downstream 3818387 5344070 ~ 5356468 (-)
AMCG00003476 NA other downstream 4365866 4583142 ~ 4808989 (-)
AMCG00003459 NA other downstream 5279331 3876232 ~ 3895524 (-)
AMCG00003444 NA other downstream 5635888 3536172 ~ 3538967 (-)
AMCG00003572 NA other upstream 673218 9853199 ~ 9865649 (-)
AMCG00003573 NA other upstream 694689 9874670 ~ 9878444 (-)
AMCG00003587 naa20 other upstream 1445365 10625346 ~ 10633112 (-)
AMCG00003586 NA other upstream 1771103 10951084 ~ 10956353 (-)
AMCG00003595 myo6,LOC106571274 other upstream 1883140 11063121 ~ 11116905 (-)

Expression


Co-expression Network