G1856


Basic Information

Item Value
gene id G1856
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 11050151 ~ 11051078 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU2212
caaattttaatgcattttaataggtaacaaaaggtgaaaaatgtCAGGGGGTGTAGACTCTATTGACTTTCtacatatgtgtgtttatatatatatatatatatatacacacacacacacacacacataaacagacTCCATGTTATACATCTACATTCTACAGCTTTAGCTGTACATTAAATACtttactatacattttaatgtagtgacttaaaaataatcagaGATTGAATGgagatacagtactgtgcaaacgttttaggcaggtgtgataaaatgcagtgaagtaagaatgctttcaaaaatagacattaatagattatatttatcaattaacgaaatgcaaagtgagtgaaaagaagacaaatctacatcaaatcaatatttggtgtgaccaccctttgccttcaaaacagcatcaattcttttaggtacacttgcacaaagtcagggattttgtaggcatagtCAGTcatatgattaaacaattatagcaaacaggtgctaatgatcatcaattcaatatgtaggttgaaacacaatcattaactgaaactaacagctgtgtaggaggaataaaactgggtgaggaacagccagactcagctaacaaggtgaggttgctgaagacagtttactgtcaaaagtcaaacaccatggcaagactgagcacagcaagtggttggccaaggaaacttactgcagcagatgaaagacacatcatgctgaCTTCtctttgcaatcggaagatgtccagcagtgccatcagctcagaattggcagaaaacagtgggaccttGATACACctatctactgtccagagaagtctgctcagaagtggccttcatggaagacttgcagccaaaaagtcattcctccgacgtggcaacaaggccaagcgactcaactatgcatgaaaacacaggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2212 True 928 lncRNA 0.44 1 11050151 11051078

Neighbor

gene id symbol gene type direction distance location
AMCG00003592 NA coding downstream 53326 10970364 ~ 10996825 (-)
AMCG00003588 tmem30ab,LOC107721815,LOC107658180,LOC107597847,LOC107714749,LOC108257743,LOC107664818 coding downstream 86950 10957409 ~ 10963201 (-)
AMCG00003589 col12a1,col12a1a,LOC108428624 coding downstream 105276 10871341 ~ 10944875 (-)
AMCG00003584 NA coding downstream 433154 10584660 ~ 10616997 (-)
AMCG00003582 NA coding downstream 469826 10578898 ~ 10580325 (-)
AMCG00003596 impg1 coding upstream 98991 11150069 ~ 11183677 (-)
AMCG00003597 htr1b,LOC103360562 coding upstream 198009 11249087 ~ 11250247 (-)
AMCG00003600 NA coding upstream 294866 11345944 ~ 11366600 (-)
AMCG00003602 NA coding upstream 320686 11371764 ~ 11372057 (-)
AMCG00003601 NA coding upstream 321286 11372364 ~ 11378357 (-)
G1744 NA non-coding downstream 634264 10414938 ~ 10415887 (-)
G1631 NA non-coding downstream 1197813 9852069 ~ 9852338 (-)
G1630 prkd3,LOC107098152,LOC106607674 non-coding downstream 1198724 9850691 ~ 9851427 (-)
G1492 NA non-coding downstream 1870170 9174855 ~ 9179981 (-)
G1415 cpsf3 non-coding downstream 2072302 8974810 ~ 8977849 (-)
G1935 NA non-coding upstream 330794 11381872 ~ 11386054 (-)
G2044 NA non-coding upstream 681726 11732804 ~ 11863101 (-)
G2052 LOC100846954 non-coding upstream 807843 11858921 ~ 11905671 (-)
G2066 NA non-coding upstream 975841 12026919 ~ 12027158 (-)
G2071 NA non-coding upstream 1000167 12051245 ~ 12051491 (-)
AMCG00003586 NA other downstream 93798 10951084 ~ 10956353 (-)
AMCG00003587 naa20 other downstream 417039 10625346 ~ 10633112 (-)
AMCG00003573 NA other downstream 1171707 9874670 ~ 9878444 (-)
AMCG00003572 NA other downstream 1184502 9853199 ~ 9865649 (-)
AMCG00003550 NA other downstream 1967301 9009117 ~ 9082850 (-)
AMCG00003595 myo6,LOC106571274 other upstream 12043 11063121 ~ 11116905 (-)
AMCG00003618 NA other upstream 692911 11743989 ~ 11789275 (-)
AMCG00003623 LOC101472980,LOC105894864,LOC108427479,LOC105908251,LOC106571292,LOC105017864 other upstream 870913 11921991 ~ 11939783 (-)
AMCG00003625 NA other upstream 1024241 12075319 ~ 12078152 (-)
G2236 NA other upstream 1983875 13034953 ~ 13035489 (-)

Expression


Co-expression Network