G188


Basic Information

Item Value
gene id G188
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 1033660 ~ 1035682 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU225
atgttttttttaatggtggaGTCCAAATTCAATGTGGATAAGATCAATGAACTCAAAATGTTATGTATAACCACTGGAAATTCtaaattttaaacatttgttagaTGCTTTATGCTTCTGATTACTGTAACAGTCTTCAAACAGTGGGTACAAGAAAACCCTATATATTAAGTTATCATATTTGCTTTGAAGCTCAAATCTGCCCCTTGGTGATGAGTTCAGAGTAAAAACCACAACTCCCTCCATGTTTCCTATCCCCCTTTTATAGCTTTGGAtcaaaccaatcaatcaatgttAAGGAAAACCTACTTGCCATTGACAacaagacattaaataaataacccccTACATTATAccaaatatacttatttatgcTGTATCATTACAAACTGACCACATACACCTATCTTCATTATTCCCATTAATGATATTTAGATACATTTCCATCATATAAAGCACACATCAACACGATACCACCCTCCCACATATGTGAAGTGGAGCATGGGTATTTAAACTGGAAATGGTCTTTGTGCGATATGTGAATCACTCTCATATCCAAAGAAAACTGTAAGCCTTTCACTGCAATGAAACCGTACAGGAATAACAAAGAGGAAACCTTAGCagacagaaaatacacataCTGGCAAAGgaaggcaaaaacaaacaaaacaaatgctgtttGTTTAAGATGCTATCTTCACATGGTTTCATGGCAGGCAAAATTCCCCCACATAACAACACCAGATAAGTATTGGTTATTTAATCTCATACAGCTATAATAGTGATATATGATGTTAACAAACACTTTCAGCATAGGCAACAGCAAAACAGGTCAAAAGTAACAGTAAAacaggtgaaaataaaaacGATAACAATCATGATGGTATGAATGGAAATTTCTTAATAAGGGATGAGATGCAATGTGGTTTCATTGCTGTCGGTTTAAAGTTTAACAGGAcaacaaatatgtaaatcttGAAAGTTCAGATGCTTATTAGAAAGTCCTAATAGGTTAGCCACTTTAGTTAGGAGCTGATATGGATACAGTCAGAAATTCAAGGAGTGTGTCTGCAAGGTGAAGATAGATGGTCCAGTGATGCCAGGTTCCTGTGGTCCTCCAAATGTAGTTTGGAAAGATGGTTGTACAAAAGAAAGGAGTCATAGTCACTTAGATATTCCAATGAAGCCACGGCTCTTTCATGGGTCATGCACTTTCTCTGGCTGGGATCTGGAGGCTGTTCTCTGGTCAAGATGATTGTTCTGCTGGTGTTGCAAGGACAAACTGTCTTTAGCATGGAGCGAGAAGCTACTGTGTGGAATTGTTCCAATTCAGTATGCCTATTCCAATGATCGGGGGAGAATTCTAACTGTTCCTAAAGTTAGCATTTTTGCCTGACCACTAAAGCATGTTCGATGACTTTGAGAGAATTATCAATACCGTCTGAGGATCTGACATAATGTCACAAAGTATCCTGTGGAGTGGAGACTCAAAGTTGTGTTAAAGTTTTTAAGGGAAGTTAATGTTAATTAGCGCTTATTGGCTTTCTCCCAAGTTGTAGACTGTGGGTCATGGCACTCATGGTATATGTCTCATTGGTGGGATACTTGGGGTAGACTCACCGCCAAGCAATTCGCTGCTCACCAGGTAGCTGTCAGTATTACATCTTTATGCCTTTGCTTGCAGAATGTAGGTGGGAGATTTACATCTTCCAGATACAGGATCAATTGTGTGAGAAAGTGGCAGAGGTTCCATCTGTGAAATAATGGATGTTTAGCACGCTGTTCGGAACCCCTaaactgtgtgttttaaaagataTCAGAGAACATCTTACTTTTTTTGCCTGCTAGCAATGACCTGTATCTGAAAGGTCAGGgatctggagagggagaagagtgATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225 True 1900 lncRNA 0.38 2 1033660 1035682

Neighbor

gene id symbol gene type direction distance location
AMCG00003401 NA coding downstream 103082 919312 ~ 930578 (-)
AMCG00003399 NA coding downstream 230947 671361 ~ 802713 (-)
AMCG00003394 NA coding downstream 369384 660528 ~ 664276 (-)
AMCG00003393 NA coding downstream 405970 619566 ~ 627690 (-)
AMCG00003392 NA coding downstream 436482 594275 ~ 597178 (-)
AMCG00003402 NA coding upstream 32357 1068039 ~ 1216767 (-)
AMCG00003403 NA coding upstream 208872 1244554 ~ 1246054 (-)
AMCG00003404 NA coding upstream 218187 1253869 ~ 1254981 (-)
AMCG00003407 nmbr,LOC106607916,LOC106571412 coding upstream 620703 1656385 ~ 1724582 (-)
AMCG00003416 NA coding upstream 1035146 2070828 ~ 2088149 (-)
G122 NA non-coding downstream 263674 734766 ~ 769986 (-)
G112 NA non-coding downstream 417340 614191 ~ 616320 (-)
G103 NA non-coding downstream 474926 519101 ~ 558734 (-)
G89 NA non-coding downstream 547760 485584 ~ 485900 (-)
G212 NA non-coding upstream 106556 1142238 ~ 1158563 (-)
G257 NA non-coding upstream 552135 1587817 ~ 1588261 (-)
G263 NA non-coding upstream 678895 1714577 ~ 1714856 (-)
G277 NA non-coding upstream 790815 1826497 ~ 1830075 (-)
G279 NA non-coding upstream 805116 1840798 ~ 1843781 (-)
AMCG00003400 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 76464 945223 ~ 957196 (-)
AMCG00003423 NA other upstream 1361960 2397642 ~ 2401895 (-)
AMCG00003422 NA other upstream 1391715 2427397 ~ 2438821 (-)
G531 adck3,coq8a,LOC107602173,LOC107675039,LOC107727627 other upstream 2358975 3394657 ~ 3430272 (-)
AMCG00003444 NA other upstream 2500490 3536172 ~ 3538967 (-)
AMCG00003459 NA other upstream 2840550 3876232 ~ 3895524 (-)

Expression


Co-expression Network